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EMAN::IterBinMaskProcessor Class Reference

Iterative expansion of a binary mask, val1 is number of pixels to expand, if val2!=0 will make a soft Gaussian edge starting after val2 pixels. More...

#include <processor.h>

Inheritance diagram for EMAN::IterBinMaskProcessor:

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Collaboration diagram for EMAN::IterBinMaskProcessor:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

static ProcessorNEW ()

Static Public Attributes

static const string NAME = "mask.addshells.gauss"

Detailed Description

Iterative expansion of a binary mask, val1 is number of pixels to expand, if val2!=0 will make a soft Gaussian edge starting after val2 pixels.

Parameters:
val1 number of pixels to expand
val2 number of Gaussian pixels to expand, following the first expansion

Definition at line 5771 of file processor.h.


Member Function Documentation

virtual string EMAN::IterBinMaskProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5781 of file processor.h.

05782                 {
05783                         return "Iterative expansion of a binary mask, val1 is number of pixels to expand, if val2!=0 will make a soft Gaussian edge starting after val2 pixels.";
05784                 }

virtual string EMAN::IterBinMaskProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5776 of file processor.h.

References NAME.

05777                 {
05778                         return NAME;
05779                 }

virtual TypeDict EMAN::IterBinMaskProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 5791 of file processor.h.

References EMAN::EMObject::FLOAT, and EMAN::TypeDict::put().

05792                 {
05793                         TypeDict d;
05794                         d.put("val1", EMObject::FLOAT, "number of pixels to expand");
05795                         d.put("val2", EMObject::FLOAT, "number of Gaussian pixels to expand, following the first expansion");
05796                         return d;
05797                 }

static Processor* EMAN::IterBinMaskProcessor::NEW  )  [inline, static]
 

Definition at line 5786 of file processor.h.

05787                 {
05788                         return new IterBinMaskProcessor();
05789                 }

void IterBinMaskProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 6602 of file processor.cpp.

References EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, EMAN::Processor::params, t, and EMAN::EMData::update().

06603 {
06604         if (!image) {
06605                 LOGWARN("NULL Image");
06606                 return;
06607         }
06608 
06609         float val1 = params["val1"];
06610         float val2 = params["val2"];
06611 
06612         int nx = image->get_xsize();
06613         int ny = image->get_ysize();
06614         int nz = image->get_zsize();
06615         EMData *image2 = new EMData(nx,ny,nz);
06616 
06617         // Got a compile warning complaining that these things were never used. Hope I didn't break anything - apologies if so (d.woolford)
06618 //      float *dat = image->get_data();
06619 //      float *dat2 = image2->get_data();
06620 
06621 
06622         float *d = image->get_data();
06623         float *d2 = image2->get_data();
06624 
06625         const int nxy = nx * ny;
06626         size_t size = nx * ny * nz;
06627 
06628         // TODO: THIS IS EXTREMELY INEFFICIENT
06629         if (nz != 1) {
06630                 for (int l = 1; l <= (int) val1+val2; ++l) {
06631                         for (size_t i=0; i<size; i++) d2[i]=d[i];
06632                         for (int k = 1; k < nz - 1; ++k) {
06633                                 for (int j = 1; j < ny - 1; ++j) {
06634                                         for (int i = 1; i < nx - 1; ++i) {
06635                                                 size_t t = i + j*nx+k*nx*ny;
06636                                                 if (d[t]) continue;
06637                                                 if (d2[t - 1] || d2[t + 1] || d2[t + nx] || d2[t - nx] || d2[t + nxy] || d2[t - nxy]) d[t] = (float) l + 1;
06638                                         }
06639                                 }
06640                         }
06641                 }
06642         }
06643         else {
06644                 for (int l = 1; l <= (int) val1+val2; ++l) {
06645                         for (size_t i=0; i<size; i++) d2[i]=d[i];
06646                         for (int j = 1; j < ny - 1; ++j) {
06647                                 for (int i = 1; i < nx - 1; ++i) {
06648                                         size_t t = i + j * nx;
06649                                         if (d[t]) continue;
06650                                         if (d2[t - 1] || d2[t + 1] || d2[t + nx] || d2[t - nx]) d[t] = (float) l + 1;
06651                                 }
06652                         }
06653                 }
06654         }
06655 
06656         vector<float> vec;
06657         for (int i=0; i<val1+2; i++) vec.push_back(1.0);
06658         for (int i=0; i<val2; i++) {
06659                 vec.push_back(exp(-pow(2.0f*i/(val2),2.0f)));
06660 //              printf("%f\n",exp(-pow(2.0*i/(val1-val2),2.0)));
06661         }
06662         for (size_t i = 0; i < size; i++) if (d[i]) d[i]=vec[(int)d[i]];
06663 
06664         image->update();
06665         delete image2;
06666 }


Member Data Documentation

const string IterBinMaskProcessor::NAME = "mask.addshells.gauss" [static]
 

Definition at line 5799 of file processor.h.

Referenced by get_name().


The documentation for this class was generated from the following files:
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