#include <processor.h>
Inheritance diagram for EMAN::MatchSFProcessor:
Public Member Functions | |
virtual string | get_name () const |
Get the processor's name. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
static Processor * | NEW () |
Static Public Attributes | |
static const string | NAME = "filter.matchto" |
Protected Member Functions | |
void | create_radial_func (vector< float > &radial_mask, EMData *image) const |
to | EMData object to match to. Make sure apix values are set properly |
Definition at line 5664 of file processor.h.
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Implements EMAN::FourierAnlProcessor. Definition at line 6145 of file processor.cpp. References EMAN::EMData::calc_radial_dist(), EMAN::EMData::do_fft(), EMAN::EMData::get_attr(), EMAN::XYData::get_x(), EMAN::XYData::get_yatx(), EMAN::EMData::get_ysize(), EMAN::EMData::is_complex(), EMAN::Processor::params, EMAN::Util::save_data(), EMAN::XYData::set_x(), EMAN::XYData::set_y(), sqrt(), and EMAN::XYData::write_file(). 06145 { 06146 // The radial mask comes in with the existing radial image profile 06147 // The radial mask runs from 0 to the 1-D Nyquist (it leaves out the corners in Fourier space) 06148 06149 EMData *to = params["to"]; 06150 XYData *sf = new XYData(); 06151 float apixto = to->get_attr("apix_x"); 06152 06153 06154 if (to->is_complex()) { 06155 vector<float> rd=to->calc_radial_dist(to->get_ysize()/2.0,0,1.0f,1); 06156 for (size_t i=0; i<rd.size(); i++) { 06157 sf->set_x(i,i/(apixto*2.0f*rd.size())); 06158 sf->set_y(i,rd[i]); 06159 } 06160 } 06161 else { 06162 EMData *tmp=to->do_fft(); 06163 vector<float> rd=tmp->calc_radial_dist(to->get_ysize()/2,0,1.0,1); 06164 for (size_t i=0; i<rd.size(); i++) { 06165 sf->set_x(i,i/(apixto*2.0f*rd.size())); 06166 sf->set_y(i,rd[i]); 06167 } 06168 delete tmp; 06169 } 06170 06171 float apix=image->get_attr("apix_x"); 06172 06173 sf->write_file("a.txt"); 06174 Util::save_data(0,sf->get_x(1),radial_mask,"b.txt"); 06175 06176 int n = radial_mask.size(); 06177 for (int i=0; i<n; i++) { 06178 if (radial_mask[i]>0) radial_mask[i]= sqrt(sf->get_yatx(i/(apix*2.0f*n),false)/radial_mask[i]); 06179 else if (i>0) radial_mask[i]=radial_mask[i-1]; 06180 } 06181 06182 Util::save_data(0,sf->get_x(1),radial_mask,"c.txt"); 06183 06184 delete sf; 06185 }
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Get the descrition of this specific processor. This function must be overwritten by a subclass.
Implements EMAN::Processor. Definition at line 5673 of file processor.h.
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Get the processor's name. Each processor is identified by a unique name.
Implements EMAN::Processor. Definition at line 5668 of file processor.h. References NAME. 05669 { 05670 return NAME; 05671 }
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Get processor parameter information in a dictionary. Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::FourierAnlProcessor. Definition at line 5683 of file processor.h. References EMAN::EMObject::EMDATA, and EMAN::TypeDict::put(). 05684 { 05685 TypeDict d; 05686 d.put("to", EMObject::EMDATA, "The image to match with. Make sure apix values are correct."); 05687 return d; 05688 }
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Definition at line 5678 of file processor.h. 05679 { 05680 return new MatchSFProcessor(); 05681 }
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Definition at line 5690 of file processor.h. Referenced by get_name(). |