EMAN::TestImageCylinder Class Reference

Replace a source image with a cylinder. More...

#include <processor.h>

Inheritance diagram for EMAN::TestImageCylinder:

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Collaboration diagram for EMAN::TestImageCylinder:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

static ProcessorNEW ()

Static Public Attributes

static const string NAME = "testimage.cylinder"

Detailed Description

Replace a source image with a cylinder.

Parameters:
radius radius for the cylinder
height height for the cylinder, by default it's the nz

Definition at line 6562 of file processor.h.


Member Function Documentation

virtual string EMAN::TestImageCylinder::get_desc (  )  const [inline, virtual]

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 6572 of file processor.h.

06573                 {
06574                         return "Replace a source image as a cylinder";
06575                 }

virtual string EMAN::TestImageCylinder::get_name (  )  const [inline, virtual]

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 6567 of file processor.h.

References NAME.

06568                 {
06569                         return NAME;
06570                 }

virtual TypeDict EMAN::TestImageCylinder::get_param_types (  )  const [inline, virtual]

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 6582 of file processor.h.

References EMAN::EMObject::FLOAT, and EMAN::TypeDict::put().

06583                 {
06584                         TypeDict d;
06585                         d.put("radius", EMObject::FLOAT, "radius for the cylinder");
06586                         d.put("height", EMObject::FLOAT, "height for the cylinder, by default it's the nz");
06587 
06588                         return d;
06589                 }

static Processor* EMAN::TestImageCylinder::NEW (  )  [inline, static]

Definition at line 6577 of file processor.h.

06578                 {
06579                         return new TestImageCylinder();
06580                 }

void TestImageCylinder::process_inplace ( EMData image  )  [virtual]

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 7808 of file processor.cpp.

References EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), EMAN::Dict::has_key(), ImageDimensionException, InvalidValueException, min, EMAN::Processor::params, EMAN::TestImageProcessor::preprocess(), and EMAN::EMData::update().

07809 {
07810         preprocess(image);
07811 
07812         int nx = image->get_xsize();
07813         int ny = image->get_ysize();
07814         int nz = image->get_zsize();
07815 
07816         if(nz == 1) {
07817                 throw ImageDimensionException("This processor only apply to 3D image");
07818         }
07819 
07820         float radius = params["radius"];
07821 #ifdef _WIN32
07822         if(radius > _cpp_min(nx, ny)/2.0) {
07823 #else
07824         if(radius > std::min(nx, ny)/2.0) {
07825 #endif
07826                 throw InvalidValueException(radius, "radius must be <= min(nx, ny)/2");
07827         }
07828 
07829         float height;
07830         if(params.has_key("height")) {
07831                 height = params["height"];
07832                 if(height > nz) {
07833                         throw InvalidValueException(radius, "height must be <= nz");
07834                 }
07835         }
07836         else {
07837                 height = static_cast<float>(nz);
07838         }
07839 
07840         float *dat = image->get_data();
07841         float x2, y2; //this is coordinates of this pixel from center axle
07842         float r = 0.0f;
07843         for (int k = 0; k < nz; ++k) {
07844                 for (int j = 0; j < ny; ++j) {
07845                         for (int i = 0; i < nx; ++i, ++dat) {
07846                                 x2 = fabs((float)i - nx/2);
07847                                 y2 = fabs((float)j - ny/2);
07848                                 r = (x2*x2)/(radius*radius) + (y2*y2)/(radius*radius);
07849 
07850                                 if(r<=1 && k>=(nz-height)/2 && k<=(nz+height)/2) {
07851                                         *dat = 1;
07852                                 }
07853                                 else {
07854                                         *dat = 0;
07855                                 }
07856                         }
07857                 }
07858         }
07859 
07860         image->update();
07861 }


Member Data Documentation

const string TestImageCylinder::NAME = "testimage.cylinder" [static]

Definition at line 6591 of file processor.h.

Referenced by get_name().


The documentation for this class was generated from the following files:
Generated on Mon Jul 19 12:44:13 2010 for EMAN2 by  doxygen 1.4.7