#include <reconstructor.h>
Inheritance diagram for EMAN::nnSSNR_ctfReconstructor:
Public Member Functions | |
nnSSNR_ctfReconstructor () | |
nnSSNR_ctfReconstructor (const string &symmetry, int size, int npad, float snr, int sign) | |
~nnSSNR_ctfReconstructor () | |
virtual void | setup () |
Initialize the reconstructor. | |
virtual int | insert_slice (const EMData *const slice, const Transform &euler, const float weight=1.0) |
Insert a slice into a 3D volume, in a given orientation. | |
virtual EMData * | finish (bool doift=true) |
Finish reconstruction and return the complete model. | |
virtual string | get_name () const |
Get the unique name of this class (especially for factory based instantiation access). | |
virtual string | get_desc () const |
Get a clear, concise description of this class. | |
TypeDict | get_param_types () const |
void | setup (const string &symmetry, int size, int npad, float snr, int sign) |
int | insert_padfft_slice (EMData *padded, const Transform &trans, int mult=1) |
Static Public Member Functions | |
static Reconstructor * | NEW () |
Static Public Attributes | |
static const string | NAME = "nnSSNR_ctf" |
Private Member Functions | |
void | buildFFTVolume () |
void | buildNormVolume () |
void | buildNorm2Volume () |
void | buildNorm3Volume () |
Private Attributes | |
EMData * | m_volume |
EMData * | m_wptr |
EMData * | m_wptr2 |
EMData * | m_wptr3 |
EMData * | m_result |
bool | m_delete_volume |
bool | m_delete_weight |
bool | m_delete_weight2 |
bool | m_delete_weight3 |
string | m_symmetry |
int | m_weighting |
int | m_vnx |
int | m_vny |
int | m_vnz |
int | m_npad |
int | m_nsym |
int | m_vnzp |
int | m_vnyp |
int | m_vnxp |
int | m_vnzc |
int | m_vnyc |
int | m_vnxc |
float | m_wghta |
float | m_wghtb |
int | m_sign |
float | m_snr |
int | wiener |
Definition at line 988 of file reconstructor.h.
nnSSNR_ctfReconstructor::nnSSNR_ctfReconstructor | ( | ) |
nnSSNR_ctfReconstructor::nnSSNR_ctfReconstructor | ( | const string & | symmetry, | |
int | size, | |||
int | npad, | |||
float | snr, | |||
int | sign | |||
) |
Definition at line 2916 of file reconstructor.cpp.
References m_result, m_volume, m_wptr, m_wptr2, m_wptr3, and setup().
02917 { 02918 m_volume = NULL; 02919 m_wptr = NULL; 02920 m_wptr2 = NULL; 02921 m_wptr3 = NULL; 02922 m_result = NULL; 02923 02924 setup( symmetry, size, npad, snr, sign ); 02925 }
nnSSNR_ctfReconstructor::~nnSSNR_ctfReconstructor | ( | ) |
Definition at line 2927 of file reconstructor.cpp.
References checked_delete(), m_delete_volume, m_delete_weight, m_delete_weight2, m_delete_weight3, m_result, m_volume, m_wptr, m_wptr2, and m_wptr3.
02928 { 02929 02930 if( m_delete_volume ) 02931 checked_delete(m_volume); 02932 if( m_delete_weight ) 02933 checked_delete( m_wptr ); 02934 if ( m_delete_weight2 ) 02935 checked_delete( m_wptr2 ); 02936 if ( m_delete_weight3 ) 02937 checked_delete( m_wptr3 ); 02938 checked_delete( m_result ); 02939 }
void nnSSNR_ctfReconstructor::buildFFTVolume | ( | ) | [private] |
Definition at line 2988 of file reconstructor.cpp.
References EMAN::Dict::has_key(), m_delete_volume, m_npad, m_vnxc, m_vnxp, m_vnyp, m_vnzp, m_volume, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_attr(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().
Referenced by setup().
02988 { 02989 02990 int offset = 2 - m_vnxp%2; 02991 if( params.has_key("fftvol") ) { 02992 m_volume = params["fftvol"]; /* volume should be defined in python when PMI is turned on*/ 02993 m_delete_volume = false; 02994 } else { 02995 m_volume = new EMData(); 02996 m_delete_volume = true; 02997 } 02998 02999 m_volume->set_size(m_vnxp+offset,m_vnyp,m_vnzp); 03000 m_volume->to_zero(); 03001 03002 if ( m_vnxp % 2 == 0 ) { 03003 m_volume->set_fftodd(0); 03004 } else { 03005 m_volume->set_fftodd(1); 03006 } 03007 03008 m_volume->set_nxc(m_vnxc); 03009 m_volume->set_complex(true); 03010 m_volume->set_ri(true); //(real, imaginary) instead of polar coordinate 03011 m_volume->set_fftpad(true); 03012 m_volume->set_attr("npad", m_npad); 03013 m_volume->set_array_offsets(0,1,1); 03014 }
void nnSSNR_ctfReconstructor::buildNorm2Volume | ( | ) | [private] |
Definition at line 3031 of file reconstructor.cpp.
References EMAN::Dict::has_key(), m_delete_weight2, m_vnxc, m_vnyp, m_vnzp, m_wptr2, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().
Referenced by setup().
03031 { 03032 03033 if( params.has_key("weight2") ) { 03034 m_wptr2 = params["weight2"]; 03035 m_delete_weight2 = false; 03036 } else { 03037 m_wptr2 = new EMData(); 03038 m_delete_weight2 = true; 03039 } 03040 m_wptr2->set_size(m_vnxc+1,m_vnyp,m_vnzp); 03041 m_wptr2->to_zero(); 03042 m_wptr2->set_array_offsets(0,1,1); 03043 }
void nnSSNR_ctfReconstructor::buildNorm3Volume | ( | ) | [private] |
Definition at line 3045 of file reconstructor.cpp.
References EMAN::Dict::has_key(), m_delete_weight3, m_vnxc, m_vnyp, m_vnzp, m_wptr3, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().
Referenced by setup().
03045 { 03046 03047 if( params.has_key("weight3") ) { 03048 m_wptr3 = params["weight3"]; 03049 m_delete_weight3 = false; 03050 } else { 03051 m_wptr3 = new EMData(); 03052 m_delete_weight3 = true; 03053 } 03054 m_wptr3->set_size(m_vnxc+1,m_vnyp,m_vnzp); 03055 m_wptr3->to_zero(); 03056 m_wptr3->set_array_offsets(0,1,1); 03057 }
void nnSSNR_ctfReconstructor::buildNormVolume | ( | ) | [private] |
Definition at line 3017 of file reconstructor.cpp.
References EMAN::Dict::has_key(), m_delete_weight, m_vnxc, m_vnyp, m_vnzp, m_wptr, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().
Referenced by setup().
03018 { 03019 if( params.has_key("weight") ) { 03020 m_wptr = params["weight"]; 03021 m_delete_weight = false; 03022 } else { 03023 m_wptr = new EMData(); 03024 m_delete_weight = true; 03025 } 03026 m_wptr->set_size(m_vnxc+1,m_vnyp,m_vnzp); 03027 m_wptr->to_zero(); 03028 m_wptr->set_array_offsets(0,1,1); 03029 }
EMData * nnSSNR_ctfReconstructor::finish | ( | bool | doift = true |
) | [virtual] |
Finish reconstruction and return the complete model.
doift | A flag indicating whether the returned object should be guaranteed to be in real-space (true) or should be left in whatever space the reconstructor generated |
Reimplemented from EMAN::Reconstructor.
Definition at line 3101 of file reconstructor.cpp.
References abs, EMAN::EMData::cmplx(), ESTIMATE, m_vnxc, m_vnxp, m_vnyc, m_vnyp, m_vnzc, m_vnzp, m_volume, m_weighting, m_wghta, m_wptr, m_wptr2, m_wptr3, max, max3d(), nn(), norm(), EMAN::FactoryBase::params, EMAN::Util::round(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), sqrt(), EMAN::EMData::symplane2(), EMAN::EMData::to_zero(), and EMAN::EMData::update().
03102 { 03103 /* 03104 I changed the code on 05/15 so it only returns variance. 03105 Lines commented out are marked by //# 03106 The version prior to the currect changes is r1.190 03107 PAP 03108 */ 03109 /*** 03110 m_volume ctf*(P^2D->3D(F^3D)) 03111 m_wptr ctf^2 03112 m_wptr2 |P^2D->3D(F^3D)|^2 03113 m_wptr3 Kn 03114 nominator = sum_rot [ wght*signal ] 03115 denominator = sum_rot[ wght*variance ] 03116 ***/ 03117 int kz, ky; 03118 int box = 7; 03119 int kc = (box-1)/2; 03120 float alpha = 0.0; 03121 float argx, argy, argz; 03122 vector< float > pow_a( 3*kc+1, 1.0 ); 03123 float w = params["w"]; 03124 float dx2 = 1.0f/float(m_vnxc)/float(m_vnxc); 03125 float dy2 = 1.0f/float(m_vnyc)/float(m_vnyc); 03126 #ifdef _WIN32 03127 float dz2 = 1.0f/_cpp_max(float(m_vnzc),1.0f)/_cpp_max(float(m_vnzc),1.0f); 03128 int inc = Util::round(float(_cpp_max(_cpp_max(m_vnxc,m_vnyc),m_vnzc))/w); 03129 #else 03130 float dz2 = 1.0f/std::max(float(m_vnzc),1.0f)/std::max(float(m_vnzc),1.0f); 03131 int inc = Util::round(float(std::max(std::max(m_vnxc,m_vnyc),m_vnzc))/w); 03132 #endif //_WIN32 03133 03134 EMData* SSNR = params["SSNR"]; 03135 SSNR->set_size(inc+1,4,1); 03136 //#EMData* vol_ssnr = new EMData(); 03137 //#vol_ssnr->set_size(m_vnxp, m_vnyp, m_vnzp); 03138 //#vol_ssnr->to_zero(); 03139 //# new linea follow 03140 EMData* vol_ssnr = new EMData(); 03141 vol_ssnr->set_size(m_vnxp+ 2 - m_vnxp%2, m_vnyp ,m_vnzp); 03142 vol_ssnr->to_zero(); 03143 if ( m_vnxp % 2 == 0 ) vol_ssnr->set_fftodd(0); 03144 else vol_ssnr->set_fftodd(1); 03145 vol_ssnr->set_nxc(m_vnxc); 03146 vol_ssnr->set_complex(true); 03147 vol_ssnr->set_ri(true); 03148 vol_ssnr->set_fftpad(false); 03149 //# 03150 float *nom = new float[inc+1]; 03151 float *denom = new float[inc+1]; 03152 int *ka = new int[inc+1]; 03153 int *nn = new int[inc+1]; 03154 float wght = 1.f; 03155 for (int i = 0; i <= inc; i++) { 03156 nom[i] = 0.0f; 03157 denom[i] = 0.0f; 03158 nn[i] = 0; 03159 ka[i] = 0; 03160 } 03161 m_volume->symplane2(m_wptr, m_wptr2, m_wptr3); 03162 if ( m_weighting == ESTIMATE ) { 03163 int vol = box*box*box; 03164 for( unsigned int i=1; i < pow_a.size(); ++i ) pow_a[i] = pow_a[i-1] * exp(m_wghta); 03165 pow_a[3*kc] = 0.0; 03166 float max = max3d( kc, pow_a ); 03167 alpha = ( 1.0f - 1.0f/(float)vol ) / max; 03168 } 03169 for (int iz = 1; iz <= m_vnzp; iz++) { 03170 if ( iz-1 > m_vnzc ) kz = iz-1-m_vnzp; else kz = iz-1; 03171 argz = float(kz*kz)*dz2; 03172 for (int iy = 1; iy <= m_vnyp; iy++) { 03173 if ( iy-1 > m_vnyc ) ky = iy-1-m_vnyp; else ky = iy-1; 03174 argy = argz + float(ky*ky)*dy2; 03175 for (int ix = 0; ix <= m_vnxc; ix++) { 03176 float Kn = (*m_wptr3)(ix,iy,iz); 03177 argx = std::sqrt(argy + float(ix*ix)*dx2); 03178 int r = Util::round(float(inc)*argx); 03179 if ( r >= 0 && Kn > 4.5f ) { 03180 if ( m_weighting == ESTIMATE ) { 03181 int cx = ix; 03182 int cy = (iy<=m_vnyc) ? iy - 1 : iy - 1 - m_vnyp; 03183 int cz = (iz<=m_vnzc) ? iz - 1 : iz - 1 - m_vnzp; 03184 float sum = 0.0; 03185 for( int ii = -kc; ii <= kc; ++ii ) { 03186 int nbrcx = cx + ii; 03187 if( nbrcx >= m_vnxc ) continue; 03188 for ( int jj= -kc; jj <= kc; ++jj ) { 03189 int nbrcy = cy + jj; 03190 if( nbrcy <= -m_vnyc || nbrcy >= m_vnyc ) continue; 03191 for( int kk = -kc; kk <= kc; ++kk ) { 03192 int nbrcz = cz + jj; 03193 if ( nbrcz <= -m_vnyc || nbrcz >= m_vnyc ) continue; 03194 if( nbrcx < 0 ) { 03195 nbrcx = -nbrcx; 03196 nbrcy = -nbrcy; 03197 nbrcz = -nbrcz; 03198 } 03199 int nbrix = nbrcx; 03200 int nbriy = nbrcy >= 0 ? nbrcy + 1 : nbrcy + 1 + m_vnyp; 03201 int nbriz = nbrcz >= 0 ? nbrcz + 1 : nbrcz + 1 + m_vnzp; 03202 if( (*m_wptr)( nbrix, nbriy, nbriz ) == 0 ) { 03203 int c = 3*kc+1 - std::abs(ii) - std::abs(jj) - std::abs(kk); 03204 sum = sum + pow_a[c]; 03205 } 03206 } 03207 } 03208 } 03209 // int r = std::abs(cx) + std::abs(cy) + std::abs(cz); 03210 wght = 1.0f / ( 1.0f - alpha * sum ); 03211 } // end of ( m_weighting == ESTIMATE ) 03212 float nominator = std::norm(m_volume->cmplx(ix,iy,iz))/(*m_wptr)(ix,iy,iz); 03213 float denominator = ((*m_wptr2)(ix,iy,iz)-std::norm(m_volume->cmplx(ix,iy,iz))/(*m_wptr)(ix,iy,iz))/(Kn-1.0f); 03214 // Skip Friedel related values 03215 if( (ix>0 || (kz>=0 && (ky>=0 || kz!=0)))) { 03216 if ( r <= inc ) { 03217 nom[r] += nominator*wght; 03218 denom[r] += denominator/(*m_wptr)(ix,iy,iz)*wght; 03219 nn[r] += 2; 03220 ka[r] += int(Kn); 03221 } 03222 /* 03223 #ifdef _WIN32 03224 float tmp = _cpp_max(nominator/denominator/(*m_wptr)(ix,iy,iz)-1.0f,0.0f); 03225 #else 03226 float tmp = std::max(nominator/denominator/(*m_wptr)(ix,iy,iz)-1.0f,0.0f); 03227 #endif //_WIN32 03228 // Create SSNR as a 3D array (-n/2:n/2+n%2-1) 03229 int iix = m_vnxc + ix; int iiy = m_vnyc + ky; int iiz = m_vnzc + kz; 03230 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp ) 03231 (*vol_ssnr)(iix, iiy, iiz) = tmp; 03232 // Friedel part 03233 iix = m_vnxc - ix; iiy = m_vnyc - ky; iiz = m_vnzc - kz; 03234 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp ) 03235 (*vol_ssnr)(iix, iiy, iiz) = tmp; 03236 */ 03237 } 03238 (*vol_ssnr)(2*ix, iy-1, iz-1) = denominator*wght; 03239 } // end of Kn>4.5 or whatever 03240 } 03241 } 03242 } 03243 for (int i = 0; i <= inc; i++) { 03244 (*SSNR)(i,0,0) = nom[i]; 03245 (*SSNR)(i,1,0) = denom[i]; 03246 (*SSNR)(i,2,0) = static_cast<float>(nn[i]); 03247 (*SSNR)(i,3,0) = static_cast<float>(ka[i]); 03248 } 03249 vol_ssnr->update(); 03250 return vol_ssnr; 03251 // } 03252 }
virtual string EMAN::nnSSNR_ctfReconstructor::get_desc | ( | ) | const [inline, virtual] |
Get a clear, concise description of this class.
Implements EMAN::FactoryBase.
Definition at line 1019 of file reconstructor.h.
virtual string EMAN::nnSSNR_ctfReconstructor::get_name | ( | ) | const [inline, virtual] |
Get the unique name of this class (especially for factory based instantiation access).
Implements EMAN::FactoryBase.
Definition at line 1014 of file reconstructor.h.
References NAME.
01015 { 01016 return NAME; 01017 }
TypeDict EMAN::nnSSNR_ctfReconstructor::get_param_types | ( | ) | const [inline, virtual] |
Implements EMAN::FactoryBase.
Definition at line 1029 of file reconstructor.h.
References EMAN::EMObject::EMDATA, EMAN::EMObject::FLOAT, EMAN::EMObject::INT, EMAN::TypeDict::put(), and EMAN::EMObject::STRING.
01030 { 01031 TypeDict d; 01032 d.put("size", EMObject::INT); 01033 d.put("npad", EMObject::INT); 01034 d.put("symmetry", EMObject::STRING); 01035 d.put("fftvol", EMObject::EMDATA); 01036 d.put("fftwvol", EMObject::EMDATA); 01037 d.put("weight", EMObject::EMDATA); 01038 d.put("weight2", EMObject::EMDATA); 01039 d.put("weight3", EMObject::EMDATA); 01040 d.put("SSNR", EMObject::EMDATA); 01041 d.put("w", EMObject::FLOAT); 01042 d.put("sign", EMObject::INT); 01043 d.put("snr", EMObject::FLOAT); 01044 return d; 01045 }
int nnSSNR_ctfReconstructor::insert_padfft_slice | ( | EMData * | padded, | |
const Transform & | trans, | |||
int | mult = 1 | |||
) |
Definition at line 3087 of file reconstructor.cpp.
References Assert, m_nsym, m_symmetry, m_volume, m_wptr, m_wptr2, m_wptr3, EMAN::EMData::nn_SSNR_ctf(), and t.
Referenced by insert_slice().
03088 { 03089 Assert( padfft != NULL ); 03090 03091 // insert slice for all symmetry related positions 03092 for (int isym=0; isym < m_nsym; isym++) { 03093 Transform tsym = t.get_sym(m_symmetry, isym); 03094 m_volume->nn_SSNR_ctf(m_wptr, m_wptr2, m_wptr3, padfft, tsym, mult); 03095 } 03096 03097 return 0; 03098 }
int nnSSNR_ctfReconstructor::insert_slice | ( | const EMData *const | slice, | |
const Transform & | euler, | |||
const float | weight = 1.0 | |||
) | [virtual] |
Insert a slice into a 3D volume, in a given orientation.
slice | the image slice to be inserted into the 3D volume | |
euler | Euler angle of this image slice. | |
weight | A weighting factor for this slice, generally the number of particles in a class-average. May be ignored by some reconstructors |
NullPointerException | if the input EMData pointer is null | |
ImageFormatException | if the image is complex as opposed to real |
Reimplemented from EMAN::Reconstructor.
Definition at line 3059 of file reconstructor.cpp.
References Assert, checked_delete(), EMAN::EMData::get_attr_default(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), insert_padfft_slice(), LOGERR, m_npad, m_vnx, mult(), EMAN::padfft_slice(), and t.
03059 { 03060 // sanity checks 03061 if (!slice) { 03062 LOGERR("try to insert NULL slice"); 03063 return 1; 03064 } 03065 int padffted= slice->get_attr_default("padffted", 0); 03066 if ( padffted==0 && (slice->get_xsize()!=slice->get_ysize() || slice->get_xsize()!=m_vnx) ) { 03067 // FIXME: Why doesn't this throw an exception? 03068 LOGERR("Tried to insert a slice that is the wrong size."); 03069 return 1; 03070 } 03071 EMData* padfft = NULL; 03072 03073 if( padffted != 0 ) { 03074 padfft = new EMData(*slice); 03075 } else { 03076 padfft = padfft_slice( slice, t, m_npad ); 03077 } 03078 03079 int mult= slice->get_attr_default("mult", 1); 03080 03081 Assert( mult > 0 ); 03082 insert_padfft_slice( padfft, t, mult ); 03083 03084 checked_delete( padfft ); 03085 return 0; 03086 }
static Reconstructor* EMAN::nnSSNR_ctfReconstructor::NEW | ( | ) | [inline, static] |
Definition at line 1024 of file reconstructor.h.
References nnSSNR_ctfReconstructor().
01025 { 01026 return new nnSSNR_ctfReconstructor(); 01027 }
void nnSSNR_ctfReconstructor::setup | ( | const string & | symmetry, | |
int | size, | |||
int | npad, | |||
float | snr, | |||
int | sign | |||
) |
Definition at line 2955 of file reconstructor.cpp.
References buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), ESTIMATE, EMAN::Transform::get_nsym(), m_npad, m_nsym, m_sign, m_snr, m_symmetry, m_vnx, m_vnxc, m_vnxp, m_vny, m_vnyc, m_vnyp, m_vnz, m_vnzc, m_vnzp, m_weighting, m_wghta, m_wghtb, and wiener.
02956 { 02957 02958 m_weighting = ESTIMATE; 02959 m_wghta = 0.2f; 02960 m_wghtb = 0.004f; 02961 wiener = 1; 02962 02963 m_symmetry = symmetry; 02964 m_npad = npad; 02965 m_nsym = Transform::get_nsym(m_symmetry); 02966 02967 m_sign = sign; 02968 m_snr = snr; 02969 02970 m_vnx = size; 02971 m_vny = size; 02972 m_vnz = size; 02973 02974 m_vnxp = size*npad; 02975 m_vnyp = size*npad; 02976 m_vnzp = size*npad; 02977 02978 m_vnxc = m_vnxp/2; 02979 m_vnyc = m_vnyp/2; 02980 m_vnzc = m_vnzp/2; 02981 02982 buildFFTVolume(); 02983 buildNormVolume(); 02984 buildNorm2Volume(); 02985 buildNorm3Volume(); 02986 }
void nnSSNR_ctfReconstructor::setup | ( | ) | [virtual] |
Initialize the reconstructor.
Implements EMAN::Reconstructor.
Definition at line 2941 of file reconstructor.cpp.
References EMAN::Dict::has_key(), EMAN::FactoryBase::params, sign, and EMAN::Gatan::to_str().
Referenced by nnSSNR_ctfReconstructor().
02942 { 02943 int size = params["size"]; 02944 int npad = params["npad"]; 02945 int sign = params["sign"]; 02946 float snr = params["snr"]; 02947 string symmetry; 02948 if( params.has_key("symmetry") ) { 02949 symmetry = params["symmetry"].to_str(); 02950 } else { 02951 symmetry = "c1"; 02952 } 02953 setup( symmetry, size, npad, snr, sign ); 02954 }
bool EMAN::nnSSNR_ctfReconstructor::m_delete_volume [private] |
Definition at line 1058 of file reconstructor.h.
Referenced by buildFFTVolume(), and ~nnSSNR_ctfReconstructor().
bool EMAN::nnSSNR_ctfReconstructor::m_delete_weight [private] |
Definition at line 1059 of file reconstructor.h.
Referenced by buildNormVolume(), and ~nnSSNR_ctfReconstructor().
bool EMAN::nnSSNR_ctfReconstructor::m_delete_weight2 [private] |
Definition at line 1060 of file reconstructor.h.
Referenced by buildNorm2Volume(), and ~nnSSNR_ctfReconstructor().
bool EMAN::nnSSNR_ctfReconstructor::m_delete_weight3 [private] |
Definition at line 1061 of file reconstructor.h.
Referenced by buildNorm3Volume(), and ~nnSSNR_ctfReconstructor().
int EMAN::nnSSNR_ctfReconstructor::m_npad [private] |
Definition at line 1065 of file reconstructor.h.
Referenced by buildFFTVolume(), insert_slice(), and setup().
int EMAN::nnSSNR_ctfReconstructor::m_nsym [private] |
EMData* EMAN::nnSSNR_ctfReconstructor::m_result [private] |
Definition at line 1057 of file reconstructor.h.
Referenced by nnSSNR_ctfReconstructor(), and ~nnSSNR_ctfReconstructor().
int EMAN::nnSSNR_ctfReconstructor::m_sign [private] |
float EMAN::nnSSNR_ctfReconstructor::m_snr [private] |
string EMAN::nnSSNR_ctfReconstructor::m_symmetry [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnx [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnxc [private] |
Definition at line 1068 of file reconstructor.h.
Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().
int EMAN::nnSSNR_ctfReconstructor::m_vnxp [private] |
Definition at line 1067 of file reconstructor.h.
Referenced by buildFFTVolume(), finish(), and setup().
int EMAN::nnSSNR_ctfReconstructor::m_vny [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnyc [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnyp [private] |
Definition at line 1067 of file reconstructor.h.
Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().
int EMAN::nnSSNR_ctfReconstructor::m_vnz [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnzc [private] |
int EMAN::nnSSNR_ctfReconstructor::m_vnzp [private] |
Definition at line 1067 of file reconstructor.h.
Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().
EMData* EMAN::nnSSNR_ctfReconstructor::m_volume [private] |
Definition at line 1053 of file reconstructor.h.
Referenced by buildFFTVolume(), finish(), insert_padfft_slice(), nnSSNR_ctfReconstructor(), and ~nnSSNR_ctfReconstructor().
int EMAN::nnSSNR_ctfReconstructor::m_weighting [private] |
float EMAN::nnSSNR_ctfReconstructor::m_wghta [private] |
float EMAN::nnSSNR_ctfReconstructor::m_wghtb [private] |
EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr [private] |
Definition at line 1054 of file reconstructor.h.
Referenced by buildNormVolume(), finish(), insert_padfft_slice(), nnSSNR_ctfReconstructor(), and ~nnSSNR_ctfReconstructor().
EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr2 [private] |
Definition at line 1055 of file reconstructor.h.
Referenced by buildNorm2Volume(), finish(), insert_padfft_slice(), nnSSNR_ctfReconstructor(), and ~nnSSNR_ctfReconstructor().
EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr3 [private] |
Definition at line 1056 of file reconstructor.h.
Referenced by buildNorm3Volume(), finish(), insert_padfft_slice(), nnSSNR_ctfReconstructor(), and ~nnSSNR_ctfReconstructor().
const string nnSSNR_ctfReconstructor::NAME = "nnSSNR_ctf" [static] |
int EMAN::nnSSNR_ctfReconstructor::wiener [private] |