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EMAN::RadialProcessor Class Reference

Perform a multiplication of real image with a radial table. More...

#include <processor.h>

Inheritance diagram for EMAN::RadialProcessor:

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Collaboration diagram for EMAN::RadialProcessor:

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List of all members.

Public Member Functions

void process_inplace (EMData *image)
 To process an image in-place.
string get_name () const
 Get the processor's name.
TypeDict get_param_types () const
 Get processor parameter information in a dictionary.
string get_desc () const
 Get the descrition of this specific processor.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "mask.radialprofile"

Detailed Description

Perform a multiplication of real image with a radial table.

Parameters:
table a radial table for multiplication
Exceptions:
ImageFormatException this filter only apply to real image

Definition at line 6604 of file processor.h.


Member Function Documentation

string EMAN::RadialProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 6626 of file processor.h.

06627                 {
06628                         return "Multiply a real-space image by a radial function. 1 value / pixel, extending to corner. Missing values -> 0.";
06629                 }

string EMAN::RadialProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 6609 of file processor.h.

Referenced by process_inplace().

06610                 {
06611                         return NAME;
06612                 }

TypeDict EMAN::RadialProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 6619 of file processor.h.

References EMAN::TypeDict::put().

06620                 {
06621                         TypeDict d;
06622                         d.put("table", EMObject::FLOATARRAY, "Radial array of floats, 1 float/pixel");
06623                         return d;
06624                 }

Processor* EMAN::RadialProcessor::NEW  )  [inline, static]
 

Definition at line 6614 of file processor.h.

06615                 {
06616                         return new RadialProcessor();
06617                 }

void RadialProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 7997 of file processor.cpp.

References get_name(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), ImageFormatException, EMAN::EMData::is_complex(), LOGERR, LOGWARN, nx, ny, EMAN::Dict::size(), sqrt(), and EMAN::EMData::update().

07998 {
07999         if (!image) {
08000                 LOGWARN("NULL Image");
08001                 return;
08002         }
08003 
08004         //Note : real image only!
08005         if(image->is_complex()) {
08006                 LOGERR("%s Processor only operates on real images", get_name().c_str());
08007                 throw ImageFormatException("apply to real image only");
08008         }
08009 
08010         vector<float> table = params["table"];
08011         vector<float>::size_type tsize = table.size();
08012 
08013         int nx = image->get_xsize();
08014         int ny = image->get_ysize();
08015         int nz = image->get_zsize();
08016 
08017         int nx2 = nx / 2;
08018         int ny2 = ny / 2;
08019         int nz2 = nz / 2;
08020         float sz[3];
08021         sz[0] = static_cast<float>(nx2);
08022         sz[1] = static_cast<float>(ny2);
08023         sz[2] = static_cast<float>(nz2);
08024         float szmax = *std::max_element(&sz[0], &sz[3]);
08025         float maxsize;
08026         if(nz>1) {
08027                 maxsize = (float)(1.8f * szmax);
08028         }
08029         else{
08030                 maxsize = (float)(1.5f * szmax);
08031         }
08032         for(int i=tsize+1; i<maxsize; i++) {
08033                 table.push_back(0.0f);
08034         }
08035 
08036         float dx = 1.0f / (float)nx;
08037         float dy = 1.0f / (float)ny;
08038         float dz = 1.0f / (float)nz;
08039         float dx2 = dx * dx;
08040         float dy2 = dy * dy;
08041         float dz2 = dz * dz;
08042         int iz, iy, ix, jz, jy, jx;
08043         float argx, argy, argz;
08044         float rf, df, f;
08045         int ir;
08046         for(iz=1; iz<=nz; iz++) {
08047                 jz = iz - 1;
08048                 if(jz > nz2) {
08049                         jz -= nz;
08050                 }
08051                 argz = float(jz*jz) * dz2;
08052 
08053                 for(iy=1; iy<=ny; iy++) {
08054                         jy = iy - 1;
08055                         if(jy > ny2) {
08056                                 jy -= ny;
08057                         }
08058                         argy = argz + float(jy*jy) * dy2;
08059 
08060                         for(ix=1; ix<=nx; ix++) {
08061                                 jx = ix -1;
08062                                 argx = argy + float(jx*jx)*dx2;
08063 
08064                                 rf = sqrt(argx)*2.0f*nx2;
08065                                 ir = int(rf);
08066                                 df = rf - float(ir);
08067                                 f = table[ir] + df*(table[ir+1]-table[ir]);
08068 
08069                                 (*image)(ix-1,iy-1,iz-1) *= f;
08070                         }
08071                 }
08072         }
08073 
08074         image->update();
08075 }


Member Data Documentation

const string RadialProcessor::NAME = "mask.radialprofile" [static]
 

Definition at line 210 of file processor.cpp.


The documentation for this class was generated from the following files:
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