#include <processor.h>
Inheritance diagram for EMAN::BinarizeFourierProcessor:
Public Member Functions | ||||
virtual string | get_name () const | |||
Get the processor's name. | ||||
virtual void | process_inplace (EMData *image) | |||
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virtual TypeDict | get_param_types () const | |||
Get processor parameter information in a dictionary. | ||||
virtual string | get_desc () const | |||
Get the descrition of this specific processor. | ||||
Static Public Member Functions | ||||
static Processor * | NEW () | |||
Static Public Attributes | ||||
static const string | NAME = "threshold.binary.fourier" |
All maps set below value are set to zero Useful in tomography when you want to toss complex components with low amplitides
value | The Fourier amplitude threshold cutoff |
Definition at line 1870 of file processor.h.
virtual string EMAN::BinarizeFourierProcessor::get_desc | ( | ) | const [inline, virtual] |
Get the descrition of this specific processor.
This function must be overwritten by a subclass.
Implements EMAN::Processor.
Definition at line 1895 of file processor.h.
01896 { 01897 return "f(k) = 0 + 0i if ||f(k)|| < value; f(k) = a + bi if ||f(k)|| >= value."; 01898 }
virtual string EMAN::BinarizeFourierProcessor::get_name | ( | ) | const [inline, virtual] |
Get the processor's name.
Each processor is identified by a unique name.
Implements EMAN::Processor.
Definition at line 1873 of file processor.h.
References NAME.
01874 { 01875 return NAME; 01876 }
virtual TypeDict EMAN::BinarizeFourierProcessor::get_param_types | ( | ) | const [inline, virtual] |
Get processor parameter information in a dictionary.
Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor.
Definition at line 1888 of file processor.h.
References EMAN::EMObject::FLOAT, and EMAN::TypeDict::put().
01889 { 01890 TypeDict d; 01891 d.put("value", EMObject::FLOAT, "The Fourier amplitude threshold cutoff" ); 01892 return d; 01893 }
static Processor* EMAN::BinarizeFourierProcessor::NEW | ( | ) | [inline, static] |
Definition at line 1877 of file processor.h.
01878 { 01879 return new BinarizeFourierProcessor(); 01880 }
void BinarizeFourierProcessor::process_inplace | ( | EMData * | image | ) | [virtual] |
ImageFormatException | if the input image is not complex Note result is always in real-imaginary format |
Implements EMAN::Processor.
Definition at line 3875 of file processor.cpp.
References EMAN::EMData::ap2ri(), ENTERFUNC, EXITFUNC, EMAN::EMData::get_data(), EMAN::EMData::get_size(), ImageFormatException, EMAN::EMData::is_complex(), EMAN::Processor::params, EMAN::EMData::ri2ap(), EMAN::Dict::set_default(), EMAN::EMData::set_ri(), and EMAN::EMData::update().
03875 { 03876 ENTERFUNC; 03877 if (!image->is_complex()) throw ImageFormatException("Fourier binary thresholding processor only works for complex images"); 03878 03879 float threshold = params.set_default("value",0.0f); 03880 image->ri2ap(); // works for cuda 03881 03882 float* d = image->get_data(); 03883 for( size_t i = 0; i < image->get_size()/2; ++i, d+=2) { 03884 if ( *d < threshold ) { 03885 *d = 0; 03886 *(d+1) = 0; 03887 } 03888 } 03889 image->ap2ri(); 03890 image->set_ri(true); // So it can be used for fourier multiplaction, for example 03891 image->update(); 03892 EXITFUNC; 03893 }
const string BinarizeFourierProcessor::NAME = "threshold.binary.fourier" [static] |