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EMAN::SmartMaskProcessor Class Reference

Smart mask processor. More...

#include <processor.h>

Inheritance diagram for EMAN::SmartMaskProcessor:

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Collaboration diagram for EMAN::SmartMaskProcessor:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "mask.smart"

Detailed Description

Smart mask processor.

Parameters:
mask mask value

Definition at line 5703 of file processor.h.


Member Function Documentation

virtual string EMAN::SmartMaskProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5718 of file processor.h.

05719                 {
05720                         return "Smart mask processor.";
05721                 }

virtual string EMAN::SmartMaskProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5708 of file processor.h.

05709                 {
05710                         return NAME;
05711                 }

virtual TypeDict EMAN::SmartMaskProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 5723 of file processor.h.

References EMAN::TypeDict::put().

05724                 {
05725                         TypeDict d;
05726                         d.put("mask", EMObject::FLOAT, "mask value");
05727                         return d;
05728                 }

Processor* EMAN::SmartMaskProcessor::NEW  )  [inline, static]
 

Definition at line 5713 of file processor.h.

05714                 {
05715                         return new SmartMaskProcessor();
05716                 }

void SmartMaskProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 6164 of file processor.cpp.

References EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, nx, ny, sqrt(), and EMAN::EMData::update().

06165 {
06166         if (!image) {
06167                 LOGWARN("NULL Image");
06168                 return;
06169         }
06170 
06171         float mask = params["mask"];
06172 
06173         int nx = image->get_xsize();
06174         int ny = image->get_ysize();
06175         int nz = image->get_zsize();
06176 
06177         float *dat = image->get_data();
06178         double sma = 0;
06179         size_t smn = 0;
06180         float r = 0.0f;
06181         for (int k = 0; k < nz; ++k) {
06182                 for (int j = 0; j < ny; ++j) {
06183                         for (int i = 0; i < nx; ++i, ++dat) {
06184                                 r =
06185                                         sqrt((float) Util::square(i - nx / 2) + Util::square(j - ny / 2) +
06186                                                  Util::square(k - nz / 2));
06187                                 if (r > mask - 1.5f && r < mask - 0.5f) {
06188                                         sma += *dat;
06189                                         smn++;
06190                                 }
06191                         }
06192                 }
06193         }
06194 
06195         float smask = (float) (sma / smn);
06196         image->update();
06197 
06198         dat = image->get_data();
06199         for (int k = 0; k < nz; ++k) {
06200                 for (int j = 0; j < ny; ++j) {
06201                         for (int i = 0; i < nx; ++i, ++dat) {
06202                                 r =
06203                                         sqrt((float) Util::square(i - nx / 2) + Util::square(j - ny / 2) +
06204                                                  Util::square(k - nz / 2));
06205                                 if (r > mask - .5) {
06206                                         *dat = 0;
06207                                 }
06208                                 else {
06209                                         *dat -= smask;
06210                                 }
06211                         }
06212                 }
06213         }
06214 
06215         image->update();
06216 }


Member Data Documentation

const string SmartMaskProcessor::NAME = "mask.smart" [static]
 

Definition at line 193 of file processor.cpp.


The documentation for this class was generated from the following files:
Generated on Tue Jul 12 13:52:33 2011 for EMAN2 by  doxygen 1.3.9.1