#include <processor.h>
Inheritance diagram for EMAN::AutoMaskAsymUnit:
Public Member Functions | |
virtual void | process_inplace (EMData *image) |
To process an image in-place. | |
virtual string | get_name () const |
Get the processor's name. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
Static Public Member Functions | |
Processor * | NEW () |
Static Public Attributes | |
const string | NAME = "mask.asymunit" |
au | The asymmetric unit to mask, if -1 masks all asymmetric units but assigns each a unique value | |
sym | The symmetry type, for example, "tet" |
Definition at line 4935 of file processor.h.
|
Get the descrition of this specific processor. This function must be overwritten by a subclass.
Implements EMAN::Processor. Definition at line 4958 of file processor.h. 04959 { 04960 return "Masks out a specific asymmetric unit of the given symmetry. If the au parameter is -1 will mask all asymmetric units, assigning the asymetric unit number to the masked area."; 04961 }
|
|
Get the processor's name. Each processor is identified by a unique name.
Implements EMAN::Processor. Definition at line 4940 of file processor.h. 04941 {
04942 return NAME;
04943 }
|
|
Get processor parameter information in a dictionary. Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor. Definition at line 4950 of file processor.h. References EMAN::TypeDict::put(). 04951 { 04952 TypeDict d; 04953 d.put("au", EMObject::INT, "The asymmetric unit to mask out. If this is -1 will mask all asymmetric units, giving each a unique number."); 04954 d.put("sym", EMObject::STRING, "The symmetry, for example, d7"); 04955 return d; 04956 }
|
|
Definition at line 4945 of file processor.h. 04946 { 04947 return new AutoMaskAsymUnit(); 04948 }
|
|
To process an image in-place. For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
Implements EMAN::Processor. Definition at line 5271 of file processor.cpp. References EMAN::Factory< T >::get(), EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, nx, ny, EMAN::Symmetry3D::point_in_which_asym_unit(), v, and EMAN::Vec3f. 05271 { 05272 if (!image) { 05273 LOGWARN("NULL Image"); 05274 return; 05275 } 05276 05277 int nx = image->get_xsize(); 05278 int ny = image->get_ysize(); 05279 int nz = image->get_zsize(); 05280 05281 int ox = nx/2; 05282 int oy = ny/2; 05283 int oz = nz/2; 05284 05285 Symmetry3D* sym = Factory<Symmetry3D>::get((string)params["sym"]); 05286 int au = params.set_default("au",0); 05287 05288 float *d = image->get_data(); 05289 for(int k = 0; k < nz; ++k ) { 05290 for(int j = 0; j < ny; ++j ) { 05291 for (int i = 0; i< nx; ++i, ++d) { 05292 //cout << i << " " << j << " " << k << endl; 05293 Vec3f v(i-ox,j-oy,k-oz); 05294 // v.normalize(); 05295 int a = sym->point_in_which_asym_unit(v); 05296 if (au == -1) { 05297 *d = (float)a; 05298 } else { 05299 if ( a == au ) *d = 1; 05300 else *d = 0; 05301 } 05302 } 05303 } 05304 } 05305 05306 delete sym; 05307 05308 }
|
|
Definition at line 167 of file processor.cpp. |