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EMAN::SmartMaskProcessor Class Reference

Smart mask processor. More...

#include <processor.h>

Inheritance diagram for EMAN::SmartMaskProcessor:

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Collaboration diagram for EMAN::SmartMaskProcessor:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "mask.smart"

Detailed Description

Smart mask processor.

Parameters:
mask mask value

Definition at line 5734 of file processor.h.


Member Function Documentation

virtual string EMAN::SmartMaskProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5749 of file processor.h.

05750                 {
05751                         return "Smart mask processor.";
05752                 }

virtual string EMAN::SmartMaskProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5739 of file processor.h.

05740                 {
05741                         return NAME;
05742                 }

virtual TypeDict EMAN::SmartMaskProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 5754 of file processor.h.

References EMAN::TypeDict::put().

05755                 {
05756                         TypeDict d;
05757                         d.put("mask", EMObject::FLOAT, "mask value");
05758                         return d;
05759                 }

Processor* EMAN::SmartMaskProcessor::NEW  )  [inline, static]
 

Definition at line 5744 of file processor.h.

05745                 {
05746                         return new SmartMaskProcessor();
05747                 }

void SmartMaskProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 6250 of file processor.cpp.

References EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, nx, ny, sqrt(), and EMAN::EMData::update().

06251 {
06252         if (!image) {
06253                 LOGWARN("NULL Image");
06254                 return;
06255         }
06256 
06257         float mask = params["mask"];
06258 
06259         int nx = image->get_xsize();
06260         int ny = image->get_ysize();
06261         int nz = image->get_zsize();
06262 
06263         float *dat = image->get_data();
06264         double sma = 0;
06265         size_t smn = 0;
06266         float r = 0.0f;
06267         for (int k = 0; k < nz; ++k) {
06268                 for (int j = 0; j < ny; ++j) {
06269                         for (int i = 0; i < nx; ++i, ++dat) {
06270                                 r =
06271                                         sqrt((float) Util::square(i - nx / 2) + Util::square(j - ny / 2) +
06272                                                  Util::square(k - nz / 2));
06273                                 if (r > mask - 1.5f && r < mask - 0.5f) {
06274                                         sma += *dat;
06275                                         smn++;
06276                                 }
06277                         }
06278                 }
06279         }
06280 
06281         float smask = (float) (sma / smn);
06282         image->update();
06283 
06284         dat = image->get_data();
06285         for (int k = 0; k < nz; ++k) {
06286                 for (int j = 0; j < ny; ++j) {
06287                         for (int i = 0; i < nx; ++i, ++dat) {
06288                                 r =
06289                                         sqrt((float) Util::square(i - nx / 2) + Util::square(j - ny / 2) +
06290                                                  Util::square(k - nz / 2));
06291                                 if (r > mask - .5) {
06292                                         *dat = 0;
06293                                 }
06294                                 else {
06295                                         *dat -= smask;
06296                                 }
06297                         }
06298                 }
06299         }
06300 
06301         image->update();
06302 }


Member Data Documentation

const string SmartMaskProcessor::NAME = "mask.smart" [static]
 

Definition at line 188 of file processor.cpp.


The documentation for this class was generated from the following files:
Generated on Thu Nov 17 12:46:33 2011 for EMAN2 by  doxygen 1.3.9.1