EMAN::GradientRemoverProcessor Class Reference

Gradient remover, does a rough plane fit to find linear gradients. More...

#include <processor.h>

Inheritance diagram for EMAN::GradientRemoverProcessor:

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Collaboration diagram for EMAN::GradientRemoverProcessor:

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List of all members.

Public Member Functions

void process_inplace (EMData *image)
 To process an image in-place.
string get_name () const
 Get the processor's name.
string get_desc () const
 Get the descrition of this specific processor.

Static Public Member Functions

static ProcessorNEW ()

Static Public Attributes

static const string NAME = "math.lineargradientfix"

Detailed Description

Gradient remover, does a rough plane fit to find linear gradients.

Definition at line 3628 of file processor.h.


Member Function Documentation

string EMAN::GradientRemoverProcessor::get_desc (  )  const [inline, virtual]

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 3642 of file processor.h.

03643                 {
03644                         return "Gradient remover, does a rough plane fit to find linear gradients.";
03645                 }

string EMAN::GradientRemoverProcessor::get_name (  )  const [inline, virtual]

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 3633 of file processor.h.

References NAME.

Referenced by process_inplace().

03634                 {
03635                         return NAME;
03636                 }

static Processor* EMAN::GradientRemoverProcessor::NEW (  )  [inline, static]

Definition at line 3637 of file processor.h.

03638                 {
03639                         return new GradientRemoverProcessor();
03640                 }

void GradientRemoverProcessor::process_inplace ( EMData image  )  [virtual]

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 2632 of file processor.cpp.

References b, EMAN::Util::calc_least_square_fit(), EMAN::EMData::get_data(), get_name(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), ImageDimensionException, LOGERR, LOGWARN, and EMAN::EMData::update().

02633 {
02634         if (!image) {
02635                 LOGWARN("NULL Image");
02636                 return;
02637         }
02638 
02639         int nz = image->get_zsize();
02640         if (nz > 1) {
02641                 LOGERR("%s Processor doesn't support 3D model", get_name().c_str());
02642                 throw ImageDimensionException("3D model not supported");
02643         }
02644 
02645         int nx = image->get_xsize();
02646         int ny = image->get_ysize();
02647         float *dy = new float[ny];
02648         float m = 0;
02649         float b = 0;
02650         float sum_y = 0;
02651         float *data = image->get_data();
02652 
02653         for (int i = 0; i < ny; i++) {
02654                 Util::calc_least_square_fit(nx, 0, data + i * nx, &m, &b, false);
02655                 dy[i] = b;
02656                 sum_y += m;
02657         }
02658 
02659         float mean_y = sum_y / ny;
02660         float sum_x = 0;
02661         Util::calc_least_square_fit(ny, 0, dy, &sum_x, &b, false);
02662 
02663         for (int j = 0; j < ny; j++) {
02664                 for (int i = 0; i < nx; i++) {
02665                         data[i + j * nx] -= i * sum_x + j * mean_y + b;
02666                 }
02667         }
02668 
02669         image->update();
02670 }


Member Data Documentation

const string GradientRemoverProcessor::NAME = "math.lineargradientfix" [static]

Definition at line 3647 of file processor.h.

Referenced by get_name().


The documentation for this class was generated from the following files:
Generated on Thu May 3 10:10:14 2012 for EMAN2 by  doxygen 1.4.7