#include <processor.h>
Inheritance diagram for EMAN::LocalNormProcessor:
Public Member Functions | |
void | process_inplace (EMData *image) |
To process an image in-place. | |
virtual string | get_name () const |
Get the processor's name. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
static Processor * | NEW () |
Static Public Attributes | |
static const string | NAME = "normalize.local" |
threshold is an isosurface threshold at which all desired features are visible, radius is a normalization size similar to an lp= value.
threshold | an isosurface threshold at which all desired features are visible | |
radius | a normalization size similar to an lp= value | |
apix | Angstrom per pixel ratio |
Definition at line 5344 of file processor.h.
virtual string EMAN::LocalNormProcessor::get_desc | ( | ) | const [inline, virtual] |
Get the descrition of this specific processor.
This function must be overwritten by a subclass.
Implements EMAN::Processor.
Definition at line 5359 of file processor.h.
05360 { 05361 return "This processor attempts to perform a 'local normalization' so low density and high density features will be on a more even playing field in an isosurface display. threshold is an isosurface threshold at which all desired features are visible, radius is a feature size over which to equalize."; 05362 }
virtual string EMAN::LocalNormProcessor::get_name | ( | ) | const [inline, virtual] |
Get the processor's name.
Each processor is identified by a unique name.
Implements EMAN::Processor.
Definition at line 5349 of file processor.h.
References NAME.
05350 { 05351 return NAME; 05352 }
virtual TypeDict EMAN::LocalNormProcessor::get_param_types | ( | ) | const [inline, virtual] |
Get processor parameter information in a dictionary.
Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor.
Definition at line 5364 of file processor.h.
References EMAN::EMObject::FLOAT, and EMAN::TypeDict::put().
05365 { 05366 TypeDict d; 05367 d.put("threshold", EMObject::FLOAT, "an isosurface threshold at which all desired features are visible"); 05368 d.put("radius", EMObject::FLOAT, "a normalization size similar to an lp= value"); 05369 d.put("apix", EMObject::FLOAT, "Angstrom per pixel ratio"); 05370 return d; 05371 }
static Processor* EMAN::LocalNormProcessor::NEW | ( | ) | [inline, static] |
void LocalNormProcessor::process_inplace | ( | EMData * | image | ) | [virtual] |
To process an image in-place.
For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
image | The image to be processed. |
Implements EMAN::Processor.
Definition at line 5986 of file processor.cpp.
References EMAN::EMData::copy(), EMAN::EMData::div(), EMAN::EMData::get_ysize(), LOGWARN, EMAN::EMData::mult(), EMAN::Processor::params, and EMAN::EMData::process_inplace().
05987 { 05988 if (!image) { 05989 LOGWARN("NULL Image"); 05990 return; 05991 } 05992 float apix = params["apix"]; 05993 float threshold = params["threshold"]; 05994 float radius = params["radius"]; 05995 05996 if (apix > 0) { 05997 int ny = image->get_ysize(); 05998 radius = ny * apix / radius; 05999 //printf("Norm filter radius=%1.1f\n", radius); 06000 } 06001 06002 EMData *blur = image->copy(); 06003 EMData *maskblur = image->copy(); 06004 06005 maskblur->process_inplace("threshold.binary", Dict("value", threshold)); 06006 maskblur->process_inplace("filter.lowpass.gauss", Dict("cutoff_pixels", radius)); 06007 // maskblur->process_inplace("filter.highpass.tanh", Dict("highpass", -10.0f)); 06008 maskblur->process_inplace("threshold.belowtozero", Dict("minval", 0.001f)); 06009 // maskblur->process_inplace("threshold.belowtozero", Dict("minval", 0.001f)); 06010 06011 06012 blur->process_inplace("threshold.belowtozero", Dict("minval", threshold)); 06013 blur->process_inplace("filter.lowpass.gauss", Dict("cutoff_pixels", radius)); 06014 // blur->process_inplace("filter.highpass.tanh", Dict("cutoff_abs", -10.0f)); 06015 06016 maskblur->div(*blur); 06017 image->mult(*maskblur); 06018 // maskblur->write_image("norm.mrc", 0, EMUtil::IMAGE_MRC); 06019 06020 if( maskblur ) 06021 { 06022 delete maskblur; 06023 maskblur = 0; 06024 } 06025 06026 if( blur ) 06027 { 06028 delete blur; 06029 blur = 0; 06030 } 06031 }
const string LocalNormProcessor::NAME = "normalize.local" [static] |