EMAN::VerticalStripeProcessor Class Reference

Tries to fix images scanned on the zeiss for poor ccd normalization. More...

#include <processor.h>

Inheritance diagram for EMAN::VerticalStripeProcessor:

Inheritance graph
[legend]
Collaboration diagram for EMAN::VerticalStripeProcessor:

Collaboration graph
[legend]
List of all members.

Public Member Functions

void process_inplace (EMData *image)
 To process an image in-place.
string get_name () const
 Get the processor's name.
string get_desc () const
 Get the descrition of this specific processor.

Static Public Member Functions

static ProcessorNEW ()

Static Public Attributes

static const string NAME = "math.verticalstripefix"

Detailed Description

Tries to fix images scanned on the zeiss for poor ccd normalization.

Definition at line 3792 of file processor.h.


Member Function Documentation

string EMAN::VerticalStripeProcessor::get_desc (  )  const [inline, virtual]

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 3807 of file processor.h.

03808                 {
03809                         return "Tries to fix images scanned on the zeiss for poor ccd normalization.";
03810                 }

string EMAN::VerticalStripeProcessor::get_name (  )  const [inline, virtual]

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 3797 of file processor.h.

References NAME.

03798                 {
03799                         return NAME;
03800                 }

static Processor* EMAN::VerticalStripeProcessor::NEW (  )  [inline, static]

Definition at line 3802 of file processor.h.

03803                 {
03804                         return new VerticalStripeProcessor();
03805                 }

void VerticalStripeProcessor::process_inplace ( EMData image  )  [virtual]

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 3006 of file processor.cpp.

References EMAN::EMData::get_attr(), EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, mean(), and EMAN::EMData::update().

03007 {
03008         if (!image) {
03009                 LOGWARN("NULL Image");
03010                 return;
03011         }
03012 
03013         int nx = image->get_xsize();
03014         int ny = image->get_ysize();
03015         int nz = image->get_zsize();
03016 
03017         float *data = image->get_data();
03018         float sigma = image->get_attr("sigma");
03019 
03020         for (int k = 0; k < nz; k++) {
03021                 for (int i = 0; i < nx; i++) {
03022                         double sum = 0;
03023                         for (int j = ny / 4; j < 3 * ny / 4; j++) {
03024                                 sum += data[i + j * nx];
03025                         }
03026 
03027                         float mean = (float)sum / (ny / 2);
03028                         for (int j = 0; j < ny; j++) {
03029                                 data[i + j * nx] = (data[i + j * nx] - mean) / sigma;
03030                         }
03031                 }
03032         }
03033 
03034         image->update();
03035 }


Member Data Documentation

const string VerticalStripeProcessor::NAME = "math.verticalstripefix" [static]

Definition at line 3812 of file processor.h.

Referenced by get_name().


The documentation for this class was generated from the following files:
Generated on Thu May 3 10:10:16 2012 for EMAN2 by  doxygen 1.4.7