EMAN::nnSSNR_ctfReconstructor Class Reference

#include <reconstructor.h>

Inheritance diagram for EMAN::nnSSNR_ctfReconstructor:

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Collaboration diagram for EMAN::nnSSNR_ctfReconstructor:

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List of all members.

Public Member Functions

 nnSSNR_ctfReconstructor ()
 nnSSNR_ctfReconstructor (const string &symmetry, int size, int npad, float snr, int sign)
 ~nnSSNR_ctfReconstructor ()
virtual void setup ()
 Initialize the reconstructor.
virtual int insert_slice (const EMData *const slice, const Transform &euler, const float weight=1.0)
 Insert a slice into a 3D volume, in a given orientation.
virtual EMDatafinish (bool doift=true)
 Finish reconstruction and return the complete model.
virtual string get_name () const
 Get the unique name of this class (especially for factory based instantiation access).
virtual string get_desc () const
 Get a clear, concise description of this class.
TypeDict get_param_types () const
void setup (const string &symmetry, int size, int npad, float snr, int sign)
int insert_padfft_slice (EMData *padded, const Transform &trans, int mult=1)

Static Public Member Functions

static ReconstructorNEW ()

Static Public Attributes

static const string NAME = "nnSSNR_ctf"

Private Member Functions

void buildFFTVolume ()
void buildNormVolume ()
void buildNorm2Volume ()
void buildNorm3Volume ()

Private Attributes

EMDatam_volume
EMDatam_wptr
EMDatam_wptr2
EMDatam_wptr3
string m_symmetry
int m_weighting
int m_vnx
int m_vny
int m_vnz
int m_npad
int m_nsym
int m_vnzp
int m_vnyp
int m_vnxp
int m_vnzc
int m_vnyc
int m_vnxc
float m_wghta
float m_wghtb
int m_sign
float m_snr
int wiener

Detailed Description

Definition at line 1399 of file reconstructor.h.


Constructor & Destructor Documentation

nnSSNR_ctfReconstructor::nnSSNR_ctfReconstructor (  ) 

Definition at line 3754 of file reconstructor.cpp.

References m_volume, m_wptr, m_wptr2, and m_wptr3.

Referenced by NEW().

03755 {
03756         m_volume  = NULL;
03757         m_wptr    = NULL;
03758         m_wptr2   = NULL;
03759         m_wptr3   = NULL;
03760 }

nnSSNR_ctfReconstructor::nnSSNR_ctfReconstructor ( const string &  symmetry,
int  size,
int  npad,
float  snr,
int  sign 
)

Definition at line 3762 of file reconstructor.cpp.

References m_volume, m_wptr, m_wptr2, m_wptr3, and setup().

03763 {
03764         m_volume  = NULL;
03765         m_wptr    = NULL;
03766         m_wptr2   = NULL;
03767         m_wptr3   = NULL;
03768 
03769         setup( symmetry, size, npad, snr, sign );
03770 }

nnSSNR_ctfReconstructor::~nnSSNR_ctfReconstructor (  ) 

Definition at line 3772 of file reconstructor.cpp.

03773 {
03774 
03775         //if( m_delete_volume )  checked_delete(m_volume);
03776         //if( m_delete_weight )  checked_delete( m_wptr );
03777         //if( m_delete_weight2 ) checked_delete( m_wptr2 );
03778         //if( m_delete_weight3 ) checked_delete( m_wptr3 );
03779         //checked_delete( m_result );
03780 }


Member Function Documentation

void nnSSNR_ctfReconstructor::buildFFTVolume (  )  [private]

Definition at line 3827 of file reconstructor.cpp.

References m_npad, m_vnxc, m_vnxp, m_vnyp, m_vnzp, m_volume, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_attr(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

03827                                              {
03828 
03829         int offset = 2 - m_vnxp%2;
03830         m_volume = params["fftvol"];
03831 
03832         m_volume->set_size(m_vnxp+offset,m_vnyp,m_vnzp);
03833         m_volume->to_zero();
03834 
03835         m_volume->set_fftodd(m_vnxp % 2);
03836 
03837         m_volume->set_nxc(m_vnxc);
03838         m_volume->set_complex(true);
03839         m_volume->set_ri(true); //(real, imaginary) instead of polar coordinate
03840         m_volume->set_fftpad(true);
03841         m_volume->set_attr("npad", m_npad);
03842         m_volume->set_array_offsets(0,1,1);
03843 }

void nnSSNR_ctfReconstructor::buildNorm2Volume (  )  [private]

Definition at line 3854 of file reconstructor.cpp.

References m_vnxc, m_vnyp, m_vnzp, m_wptr2, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

03854                                                {
03855 
03856         m_wptr2 = params["weight2"];
03857         m_wptr2->set_size(m_vnxc+1,m_vnyp,m_vnzp);
03858         m_wptr2->to_zero();
03859         m_wptr2->set_array_offsets(0,1,1);
03860 }

void nnSSNR_ctfReconstructor::buildNorm3Volume (  )  [private]

Definition at line 3862 of file reconstructor.cpp.

References m_vnxc, m_vnyp, m_vnzp, m_wptr3, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

03862                                                {
03863 
03864         m_wptr3 = params["weight3"];
03865         m_wptr3->set_size(m_vnxc+1,m_vnyp,m_vnzp);
03866         m_wptr3->to_zero();
03867         m_wptr3->set_array_offsets(0,1,1);
03868 }

void nnSSNR_ctfReconstructor::buildNormVolume (  )  [private]

Definition at line 3846 of file reconstructor.cpp.

References m_vnxc, m_vnyp, m_vnzp, m_wptr, EMAN::FactoryBase::params, EMAN::EMData::set_array_offsets(), EMAN::EMData::set_size(), and EMAN::EMData::to_zero().

Referenced by setup().

03847 {
03848         m_wptr = params["weight"];
03849         m_wptr->set_size(m_vnxc+1,m_vnyp,m_vnzp);
03850         m_wptr->to_zero();
03851         m_wptr->set_array_offsets(0,1,1);
03852 }

EMData * nnSSNR_ctfReconstructor::finish ( bool  doift = true  )  [virtual]

Finish reconstruction and return the complete model.

Parameters:
doift A flag indicating whether the returned object should be guaranteed to be in real-space (true) or should be left in whatever space the reconstructor generated
Returns:
The result 3D model.

Reimplemented from EMAN::Reconstructor.

Definition at line 3909 of file reconstructor.cpp.

References abs, EMAN::EMData::cmplx(), ESTIMATE, m_vnxc, m_vnxp, m_vnyc, m_vnyp, m_vnzc, m_vnzp, m_volume, m_weighting, m_wghta, m_wptr, m_wptr2, m_wptr3, max, max3d(), nn(), norm(), EMAN::FactoryBase::params, EMAN::Util::round(), EMAN::EMData::set_complex(), EMAN::EMData::set_fftodd(), EMAN::EMData::set_fftpad(), EMAN::EMData::set_nxc(), EMAN::EMData::set_ri(), EMAN::EMData::set_size(), sqrt(), EMAN::EMData::symplane2(), EMAN::EMData::to_zero(), and EMAN::EMData::update().

03910 {
03911 /*
03912   I changed the code on 05/15/2008 so it only returns variance.
03913   Lines commented out are marked by //#
03914   The version prior to the currect changes is r1.190
03915   PAP
03916 */
03917         /***
03918             m_volume ctf*(P^2D->3D(F^3D))
03919             m_wptr   ctf^2
03920             m_wptr2  |P^2D->3D(F^3D)|^2
03921             m_wptr3  Kn
03922             nominator = sum_rot [ wght*signal ]
03923             denominator  = sum_rot[ wght*variance ]
03924                                                       ***/
03925         int kz, ky;
03926         int box = 7;
03927         int kc  = (box-1)/2;
03928         float alpha = 0.0;
03929         float argx, argy, argz;
03930         vector< float > pow_a( 3*kc+1, 1.0 );
03931         float w = params["w"];
03932         float dx2 = 1.0f/float(m_vnxc)/float(m_vnxc);
03933         float dy2 = 1.0f/float(m_vnyc)/float(m_vnyc);
03934 #ifdef  _WIN32
03935         float dz2 = 1.0f/_cpp_max(float(m_vnzc),1.0f)/_cpp_max(float(m_vnzc),1.0f);
03936         int inc = Util::round(float(_cpp_max(_cpp_max(m_vnxc,m_vnyc),m_vnzc))/w);
03937 #else
03938         float dz2 = 1.0f/std::max(float(m_vnzc),1.0f)/std::max(float(m_vnzc),1.0f);
03939         int inc = Util::round(float(std::max(std::max(m_vnxc,m_vnyc),m_vnzc))/w);
03940 #endif  //_WIN32
03941 
03942         EMData* SSNR = params["SSNR"];
03943         SSNR->set_size(inc+1,4,1);
03944         //#EMData* vol_ssnr = new EMData();
03945         //#vol_ssnr->set_size(m_vnxp, m_vnyp, m_vnzp);
03946         //#vol_ssnr->to_zero();
03947         //#  new linea follow
03948         EMData* vol_ssnr = params["vol_ssnr"];
03949         vol_ssnr->set_size(m_vnxp+ 2 - m_vnxp%2, m_vnyp ,m_vnzp);
03950         vol_ssnr->to_zero();
03951         if ( m_vnxp % 2 == 0 ) vol_ssnr->set_fftodd(0);
03952         else                   vol_ssnr->set_fftodd(1);
03953         vol_ssnr->set_nxc(m_vnxc);
03954         vol_ssnr->set_complex(true);
03955         vol_ssnr->set_ri(true);
03956         vol_ssnr->set_fftpad(false);
03957         //#
03958         float *nom    = new float[inc+1];
03959         float *denom  = new float[inc+1];
03960         int  *ka     = new int[inc+1];
03961         int  *nn     = new int[inc+1];
03962         float wght = 1.f;
03963         for (int i = 0; i <= inc; i++) {
03964                 nom[i]   = 0.0f;
03965                 denom[i] = 0.0f;
03966                 nn[i]    = 0;
03967                 ka[i]    = 0;
03968         }
03969         m_volume->symplane2(m_wptr, m_wptr2, m_wptr3);
03970         if ( m_weighting == ESTIMATE ) {
03971                 int vol = box*box*box;
03972                 for( unsigned int i=1; i < pow_a.size(); ++i ) pow_a[i] = pow_a[i-1] * exp(m_wghta);
03973                 pow_a[3*kc] = 0.0;
03974                 float max = max3d( kc, pow_a );
03975                 alpha = ( 1.0f - 1.0f/(float)vol ) / max;
03976         }
03977         for (int iz = 1; iz <= m_vnzp; iz++) {
03978                 if ( iz-1 > m_vnzc ) kz = iz-1-m_vnzp; else kz = iz-1;
03979                 argz = float(kz*kz)*dz2;
03980                 for (int iy = 1; iy <= m_vnyp; iy++) {
03981                         if ( iy-1 > m_vnyc ) ky = iy-1-m_vnyp; else ky = iy-1;
03982                         argy = argz + float(ky*ky)*dy2;
03983                         for (int ix = 0; ix <= m_vnxc; ix++) {
03984                                 float Kn = (*m_wptr3)(ix,iy,iz);
03985                                 argx = std::sqrt(argy + float(ix*ix)*dx2);
03986                                 int r = Util::round(float(inc)*argx);
03987                                 if ( r >= 0 && Kn > 4.5f ) {
03988                                         if ( m_weighting == ESTIMATE ) {
03989                                                 int cx = ix;
03990                                                 int cy = (iy<=m_vnyc) ? iy - 1 : iy - 1 - m_vnyp;
03991                                                 int cz = (iz<=m_vnzc) ? iz - 1 : iz - 1 - m_vnzp;
03992                                                 float sum = 0.0;
03993                                                 for( int ii = -kc; ii <= kc; ++ii ) {
03994                                                         int nbrcx = cx + ii;
03995                                                         if( nbrcx >= m_vnxc ) continue;
03996                                                         for ( int jj= -kc; jj <= kc; ++jj ) {
03997                                                                 int nbrcy = cy + jj;
03998                                                                 if( nbrcy <= -m_vnyc || nbrcy >= m_vnyc ) continue;
03999                                                                 for( int kk = -kc; kk <= kc; ++kk ) {
04000                                                                         int nbrcz = cz + jj;
04001                                                                         if ( nbrcz <= -m_vnyc || nbrcz >= m_vnyc ) continue;
04002                                                                         if( nbrcx < 0 ) {
04003                                                                                 nbrcx = -nbrcx;
04004                                                                                 nbrcy = -nbrcy;
04005                                                                                 nbrcz = -nbrcz;
04006                                                                         }
04007                                                                         int nbrix = nbrcx;
04008                                                                         int nbriy = nbrcy >= 0 ? nbrcy + 1 : nbrcy + 1 + m_vnyp;
04009                                                                         int nbriz = nbrcz >= 0 ? nbrcz + 1 : nbrcz + 1 + m_vnzp;
04010                                                                         if( (*m_wptr)( nbrix, nbriy, nbriz ) == 0 ) {
04011                                                                                 int c = 3*kc+1 - std::abs(ii) - std::abs(jj) - std::abs(kk);
04012                                                                                 sum = sum + pow_a[c];
04013                                                                         }
04014                                                                 }
04015                                                         }
04016                                                 }
04017 //                                              int r = std::abs(cx) + std::abs(cy) + std::abs(cz);
04018                                                 wght = 1.0f / ( 1.0f - alpha * sum );
04019                                         } // end of ( m_weighting == ESTIMATE )
04020                                         float nominator   = std::norm(m_volume->cmplx(ix,iy,iz))/(*m_wptr)(ix,iy,iz);
04021                                         float denominator = ((*m_wptr2)(ix,iy,iz)-std::norm(m_volume->cmplx(ix,iy,iz))/(*m_wptr)(ix,iy,iz))/(Kn-1.0f);
04022                                         // Skip Friedel related values
04023                                         if( (ix>0 || (kz>=0 && (ky>=0 || kz!=0)))) {
04024                                                 if ( r <= inc ) {
04025                                                         nom[r]   += nominator*wght;
04026                                                         denom[r] += denominator/(*m_wptr)(ix,iy,iz)*wght;
04027                                                         nn[r]    += 2;
04028                                                         ka[r]    += int(Kn);
04029                                                 }
04030 /*
04031 #ifdef  _WIN32
04032                                                 float  tmp = _cpp_max(nominator/denominator/(*m_wptr)(ix,iy,iz)-1.0f,0.0f);
04033 #else
04034                                                 float  tmp = std::max(nominator/denominator/(*m_wptr)(ix,iy,iz)-1.0f,0.0f);
04035 #endif  //_WIN32
04036                                                 //  Create SSNR as a 3D array (-n/2:n/2+n%2-1)
04037                                                 int iix = m_vnxc + ix; int iiy = m_vnyc + ky; int iiz = m_vnzc + kz;
04038                                                 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp )
04039                                                         (*vol_ssnr)(iix, iiy, iiz) = tmp;
04040                                                 // Friedel part
04041                                                 iix = m_vnxc - ix; iiy = m_vnyc - ky; iiz = m_vnzc - kz;
04042                                                 if( iix >= 0 && iix < m_vnxp && iiy >= 0 && iiy < m_vnyp && iiz >= 0 && iiz < m_vnzp )
04043                                                         (*vol_ssnr)(iix, iiy, iiz) = tmp;
04044 */
04045                                         }
04046                                         (*vol_ssnr)(2*ix, iy-1, iz-1) = denominator*wght;
04047                                 } // end of Kn>4.5 or whatever
04048                         }
04049                 }
04050         }
04051         for (int i = 0; i <= inc; i++) {
04052                 (*SSNR)(i,0,0) = nom[i];
04053                 (*SSNR)(i,1,0) = denom[i];
04054                 (*SSNR)(i,2,0) = static_cast<float>(nn[i]);
04055                 (*SSNR)(i,3,0) = static_cast<float>(ka[i]);
04056         }
04057         vol_ssnr->update();
04058 
04059         delete[] nom;
04060         delete[] denom;
04061         delete[] nn;
04062         delete[] ka;
04063 
04064         return 0;
04065 }

virtual string EMAN::nnSSNR_ctfReconstructor::get_desc (  )  const [inline, virtual]

Get a clear, concise description of this class.

Returns:
a clear, concise description of this class

Implements EMAN::FactoryBase.

Definition at line 1430 of file reconstructor.h.

01431                 {
01432                         return "Reconstruction by nearest neighbor with 3D SSNR with CTF";
01433                 }

virtual string EMAN::nnSSNR_ctfReconstructor::get_name (  )  const [inline, virtual]

Get the unique name of this class (especially for factory based instantiation access).

Returns:
the unique name of this class

Implements EMAN::FactoryBase.

Definition at line 1425 of file reconstructor.h.

References NAME.

01426                 {
01427                         return NAME;
01428                 }

TypeDict EMAN::nnSSNR_ctfReconstructor::get_param_types (  )  const [inline, virtual]

Returns:
a TypeDict defining and describing the feasible parameters of this class

Implements EMAN::FactoryBase.

Definition at line 1440 of file reconstructor.h.

References EMAN::EMObject::EMDATA, EMAN::EMObject::FLOAT, EMAN::EMObject::INT, EMAN::TypeDict::put(), and EMAN::EMObject::STRING.

01441                 {
01442                         TypeDict d;
01443                         d.put("size",     EMObject::INT);
01444                         d.put("npad",     EMObject::INT);
01445                         d.put("symmetry", EMObject::STRING);
01446                         d.put("fftvol",   EMObject::EMDATA);
01447                         d.put("fftwvol",  EMObject::EMDATA);
01448                         d.put("weight",   EMObject::EMDATA);
01449                         d.put("weight2",  EMObject::EMDATA);
01450                         d.put("weight3",  EMObject::EMDATA);
01451                         d.put("SSNR",     EMObject::EMDATA);
01452                         d.put("vol_ssnr", EMObject::EMDATA);
01453                         d.put("w",        EMObject::FLOAT);
01454                         d.put("sign",     EMObject::INT);
01455                         d.put("snr",      EMObject::FLOAT);
01456                         return d;
01457                 }

int nnSSNR_ctfReconstructor::insert_padfft_slice ( EMData padded,
const Transform trans,
int  mult = 1 
)

Definition at line 3895 of file reconstructor.cpp.

References Assert, m_nsym, m_symmetry, m_volume, m_wptr, m_wptr2, m_wptr3, EMAN::EMData::nn_SSNR_ctf(), and t.

Referenced by insert_slice().

03896 {
03897         Assert( padfft != NULL );
03898 
03899         // insert slice for all symmetry related positions
03900         for (int isym=0; isym < m_nsym; isym++) {
03901                 Transform tsym = t.get_sym(m_symmetry, isym);
03902                 m_volume->nn_SSNR_ctf(m_wptr, m_wptr2, m_wptr3, padfft, tsym, mult);
03903         }
03904 
03905         return 0;
03906 }

int nnSSNR_ctfReconstructor::insert_slice ( const EMData *const   slice,
const Transform euler,
const float  weight = 1.0 
) [virtual]

Insert a slice into a 3D volume, in a given orientation.

Returns:
0 if successful, 1 otherwise
Parameters:
slice the image slice to be inserted into the 3D volume
euler Euler angle of this image slice.
weight A weighting factor for this slice, generally the number of particles in a class-average. May be ignored by some reconstructors
Returns:
0 if OK. 1 if error.
Exceptions:
NullPointerException if the input EMData pointer is null
ImageFormatException if the image is complex as opposed to real

Reimplemented from EMAN::Reconstructor.

Definition at line 3870 of file reconstructor.cpp.

References Assert, checked_delete(), EMAN::EMData::get_attr_default(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), insert_padfft_slice(), LOGERR, m_npad, m_vnx, mult(), EMAN::padfft_slice(), and t.

03870                                                                                                      {
03871         // sanity checks
03872         if (!slice) {
03873                 LOGERR("try to insert NULL slice");
03874                 return 1;
03875         }
03876         int padffted= slice->get_attr_default("padffted", 0);
03877         if ( padffted==0 && (slice->get_xsize()!=slice->get_ysize() || slice->get_xsize()!=m_vnx)  ) {
03878                 // FIXME: Why doesn't this throw an exception?
03879                 LOGERR("Tried to insert a slice that is the wrong size.");
03880                 return 1;
03881         }
03882         EMData* padfft = NULL;
03883 
03884         if( padffted != 0 ) padfft = new EMData(*slice);
03885         else                 padfft = padfft_slice( slice, t, m_npad );
03886 
03887         int mult= slice->get_attr_default("mult", 1);
03888 
03889         Assert( mult > 0 );
03890         insert_padfft_slice( padfft, t, mult );
03891 
03892         checked_delete( padfft );
03893         return 0;
03894 }

static Reconstructor* EMAN::nnSSNR_ctfReconstructor::NEW (  )  [inline, static]

Definition at line 1435 of file reconstructor.h.

References nnSSNR_ctfReconstructor().

01436                 {
01437                         return new nnSSNR_ctfReconstructor();
01438                 }

void nnSSNR_ctfReconstructor::setup ( const string &  symmetry,
int  size,
int  npad,
float  snr,
int  sign 
)

Definition at line 3794 of file reconstructor.cpp.

References buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), ESTIMATE, EMAN::Transform::get_nsym(), m_npad, m_nsym, m_sign, m_snr, m_symmetry, m_vnx, m_vnxc, m_vnxp, m_vny, m_vnyc, m_vnyp, m_vnz, m_vnzc, m_vnzp, m_weighting, m_wghta, m_wghtb, and wiener.

03795 {
03796 
03797         m_weighting = ESTIMATE;
03798         m_wghta     = 0.2f;
03799         m_wghtb     = 0.004f;
03800         wiener      = 1;
03801 
03802         m_symmetry  = symmetry;
03803         m_npad      = npad;
03804         m_nsym      = Transform::get_nsym(m_symmetry);
03805 
03806         m_sign      = sign;
03807         m_snr       = snr;
03808 
03809         m_vnx       = size;
03810         m_vny       = size;
03811         m_vnz       = size;
03812 
03813         m_vnxp      = size*npad;
03814         m_vnyp      = size*npad;
03815         m_vnzp      = size*npad;
03816 
03817         m_vnxc      = m_vnxp/2;
03818         m_vnyc      = m_vnyp/2;
03819         m_vnzc      = m_vnzp/2;
03820 
03821         buildFFTVolume();
03822         buildNormVolume();
03823         buildNorm2Volume();
03824         buildNorm3Volume();
03825 }

void nnSSNR_ctfReconstructor::setup (  )  [virtual]

Initialize the reconstructor.

Implements EMAN::Reconstructor.

Definition at line 3782 of file reconstructor.cpp.

References EMAN::Dict::has_key(), EMAN::FactoryBase::params, sign, and EMAN::Gatan::to_str().

Referenced by nnSSNR_ctfReconstructor().

03783 {
03784         int  size = params["size"];
03785         int  npad = params["npad"];
03786         int  sign = params["sign"];
03787         float snr = params["snr"];
03788         string symmetry;
03789         if( params.has_key("symmetry") )  symmetry = params["symmetry"].to_str();
03790         else                              symmetry = "c1";
03791         
03792         setup( symmetry, size, npad, snr, sign );
03793 }


Member Data Documentation

int EMAN::nnSSNR_ctfReconstructor::m_npad [private]

Definition at line 1472 of file reconstructor.h.

Referenced by buildFFTVolume(), insert_slice(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_nsym [private]

Definition at line 1473 of file reconstructor.h.

Referenced by insert_padfft_slice(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_sign [private]

Definition at line 1482 of file reconstructor.h.

Referenced by setup().

float EMAN::nnSSNR_ctfReconstructor::m_snr [private]

Definition at line 1483 of file reconstructor.h.

Referenced by setup().

string EMAN::nnSSNR_ctfReconstructor::m_symmetry [private]

Definition at line 1469 of file reconstructor.h.

Referenced by insert_padfft_slice(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnx [private]

Definition at line 1471 of file reconstructor.h.

Referenced by insert_slice(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnxc [private]

Definition at line 1475 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnxp [private]

Definition at line 1474 of file reconstructor.h.

Referenced by buildFFTVolume(), finish(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vny [private]

Definition at line 1471 of file reconstructor.h.

Referenced by setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnyc [private]

Definition at line 1475 of file reconstructor.h.

Referenced by finish(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnyp [private]

Definition at line 1474 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnz [private]

Definition at line 1471 of file reconstructor.h.

Referenced by setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnzc [private]

Definition at line 1475 of file reconstructor.h.

Referenced by finish(), and setup().

int EMAN::nnSSNR_ctfReconstructor::m_vnzp [private]

Definition at line 1474 of file reconstructor.h.

Referenced by buildFFTVolume(), buildNorm2Volume(), buildNorm3Volume(), buildNormVolume(), finish(), and setup().

EMData* EMAN::nnSSNR_ctfReconstructor::m_volume [private]

Definition at line 1465 of file reconstructor.h.

Referenced by buildFFTVolume(), finish(), insert_padfft_slice(), and nnSSNR_ctfReconstructor().

int EMAN::nnSSNR_ctfReconstructor::m_weighting [private]

Definition at line 1470 of file reconstructor.h.

Referenced by finish(), and setup().

float EMAN::nnSSNR_ctfReconstructor::m_wghta [private]

Definition at line 1480 of file reconstructor.h.

Referenced by finish(), and setup().

float EMAN::nnSSNR_ctfReconstructor::m_wghtb [private]

Definition at line 1481 of file reconstructor.h.

Referenced by setup().

EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr [private]

Definition at line 1466 of file reconstructor.h.

Referenced by buildNormVolume(), finish(), insert_padfft_slice(), and nnSSNR_ctfReconstructor().

EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr2 [private]

Definition at line 1467 of file reconstructor.h.

Referenced by buildNorm2Volume(), finish(), insert_padfft_slice(), and nnSSNR_ctfReconstructor().

EMData* EMAN::nnSSNR_ctfReconstructor::m_wptr3 [private]

Definition at line 1468 of file reconstructor.h.

Referenced by buildNorm3Volume(), finish(), insert_padfft_slice(), and nnSSNR_ctfReconstructor().

const string nnSSNR_ctfReconstructor::NAME = "nnSSNR_ctf" [static]

Definition at line 1462 of file reconstructor.h.

Referenced by get_name().

int EMAN::nnSSNR_ctfReconstructor::wiener [private]

Definition at line 1484 of file reconstructor.h.

Referenced by setup().


The documentation for this class was generated from the following files:
Generated on Thu May 3 10:11:17 2012 for EMAN2 by  doxygen 1.4.7