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EMAN::RadialProcessor Class Reference

Perform a multiplication of real image with a radial table. More...

#include <processor.h>

Inheritance diagram for EMAN::RadialProcessor:

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Collaboration diagram for EMAN::RadialProcessor:
[legend]
List of all members.

Public Member Functions

void process_inplace (EMData *image)
 To process an image in-place.
string get_name () const
 Get the processor's name.
TypeDict get_param_types () const
 Get processor parameter information in a dictionary.
string get_desc () const
 Get the descrition of this specific processor.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "mask.radialprofile"

Detailed Description

Perform a multiplication of real image with a radial table.

Parameters:
table a radial table for multiplication
Exceptions:
ImageFormatException this filter only apply to real image

Definition at line 6776 of file processor.h.


Member Function Documentation

string EMAN::RadialProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 6798 of file processor.h.

06799                 {
06800                         return "Multiply a real-space image by a radial function. 1 value / pixel, extending to corner. Missing values -> 0.";
06801                 }

string EMAN::RadialProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 6781 of file processor.h.

Referenced by process_inplace().

06782                 {
06783                         return NAME;
06784                 }

TypeDict EMAN::RadialProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 6791 of file processor.h.

References EMAN::TypeDict::put().

06792                 {
06793                         TypeDict d;
06794                         d.put("table", EMObject::FLOATARRAY, "Radial array of floats, 1 float/pixel");
06795                         return d;
06796                 }

Processor* EMAN::RadialProcessor::NEW  )  [inline, static]
 

Definition at line 6786 of file processor.h.

06787                 {
06788                         return new RadialProcessor();
06789                 }

void RadialProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 7961 of file processor.cpp.

References get_name(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), ImageFormatException, EMAN::EMData::is_complex(), LOGERR, LOGWARN, nx, ny, EMAN::Dict::size(), sqrt(), and EMAN::EMData::update().

07962 {
07963         if (!image) {
07964                 LOGWARN("NULL Image");
07965                 return;
07966         }
07967 
07968         //Note : real image only!
07969         if(image->is_complex()) {
07970                 LOGERR("%s Processor only operates on real images", get_name().c_str());
07971                 throw ImageFormatException("apply to real image only");
07972         }
07973 
07974         vector<float> table = params["table"];
07975         vector<float>::size_type tsize = table.size();
07976 
07977         int nx = image->get_xsize();
07978         int ny = image->get_ysize();
07979         int nz = image->get_zsize();
07980 
07981         int nx2 = nx / 2;
07982         int ny2 = ny / 2;
07983         int nz2 = nz / 2;
07984         float sz[3];
07985         sz[0] = static_cast<float>(nx2);
07986         sz[1] = static_cast<float>(ny2);
07987         sz[2] = static_cast<float>(nz2);
07988         float szmax = *std::max_element(&sz[0], &sz[3]);
07989         float maxsize;
07990         if(nz>1) {
07991                 maxsize = (float)(1.8f * szmax);
07992         }
07993         else{
07994                 maxsize = (float)(1.5f * szmax);
07995         }
07996         for(int i=tsize+1; i<maxsize; i++) {
07997                 table.push_back(0.0f);
07998         }
07999 
08000         float dx = 1.0f / (float)nx;
08001         float dy = 1.0f / (float)ny;
08002         float dz = 1.0f / (float)nz;
08003         float dx2 = dx * dx;
08004         float dy2 = dy * dy;
08005         float dz2 = dz * dz;
08006         int iz, iy, ix, jz, jy, jx;
08007         float argx, argy, argz;
08008         float rf, df, f;
08009         int ir;
08010         for(iz=1; iz<=nz; iz++) {
08011                 jz = iz - 1;
08012                 if(jz > nz2) {
08013                         jz -= nz;
08014                 }
08015                 argz = float(jz*jz) * dz2;
08016 
08017                 for(iy=1; iy<=ny; iy++) {
08018                         jy = iy - 1;
08019                         if(jy > ny2) {
08020                                 jy -= ny;
08021                         }
08022                         argy = argz + float(jy*jy) * dy2;
08023 
08024                         for(ix=1; ix<=nx; ix++) {
08025                                 jx = ix -1;
08026                                 argx = argy + float(jx*jx)*dx2;
08027 
08028                                 rf = sqrt(argx)*2.0f*nx2;
08029                                 ir = int(rf);
08030                                 df = rf - float(ir);
08031                                 f = table[ir] + df*(table[ir+1]-table[ir]);
08032 
08033                                 (*image)(ix-1,iy-1,iz-1) *= f;
08034                         }
08035                 }
08036         }
08037 
08038         image->update();
08039 }


Member Data Documentation

const string RadialProcessor::NAME = "mask.radialprofile" [static]
 

Definition at line 215 of file processor.cpp.


The documentation for this class was generated from the following files:
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