#include <symmetry.h>
Inheritance diagram for EMAN::IcosahedralSym:
Public Member Functions | |
IcosahedralSym () | |
Constructor calls PlatonicSym::init. | |
virtual | ~IcosahedralSym () |
virtual string | get_name () const |
Return IcosahedralSym::NAME. | |
virtual string | get_desc () const |
Get a description. | |
virtual int | get_max_csym () const |
Gets the maximum symmetry of this object. | |
virtual Transform | get_sym (const int n) const |
This function provides access to the unique rotational symmetries of an icosahedron. | |
virtual int | get_nsym () const |
Gets the total number of unique roational symmetry operations associated with this symmetry For icosahedral symmetry, this is 60. | |
virtual float | get_az_alignment_offset () const |
Get the azimuth alignment offset required to ensure that orientations align correctly with symmetric axes of the icosahedron. | |
Static Public Member Functions | |
static Symmetry3D * | NEW () |
Factory support function NEW. | |
Static Public Attributes | |
static const string | NAME = "icos" |
The name of this class - used to access it from factories etc. Should be "icos". | |
Private Member Functions | |
IcosahedralSym (const IcosahedralSym &) | |
Disallow copy construction. | |
IcosahedralSym & | operator= (const IcosahedralSym &) |
Disallow assignment. |
An icosahedron has m=5, n=3, F=20 E=30=nF/2, V=12=nF/m,since vertices shared by 5 triangles It is composed of 20 triangles. E=3*20/2 A dodecahedron has m=3, n=5 F=12 E=30 V=20 It is composed of 12 pentagons. E=5*12/2; V= 5*12/3, since vertices shared by 3 pentagons"
Definition at line 857 of file symmetry.h.
EMAN::IcosahedralSym::IcosahedralSym | ( | ) | [inline] |
Constructor calls PlatonicSym::init.
Definition at line 862 of file symmetry.h.
References EMAN::PlatonicSym::init().
Referenced by NEW().
00862 {init(); }
virtual EMAN::IcosahedralSym::~IcosahedralSym | ( | ) | [inline, virtual] |
EMAN::IcosahedralSym::IcosahedralSym | ( | const IcosahedralSym & | ) | [private] |
Disallow copy construction.
float IcosahedralSym::get_az_alignment_offset | ( | ) | const [virtual] |
Get the azimuth alignment offset required to ensure that orientations align correctly with symmetric axes of the icosahedron.
This offset is directly related to the way the symmetric operations are generated by get_sym. All orientations generated as a result of using the delimiters supplied by this class should by offset by this azimuth to ensure proper alignment with tetrahedral objects in EMAN2
Reimplemented from EMAN::Symmetry3D.
Definition at line 1717 of file symmetry.cpp.
Referenced by get_sym().
virtual string EMAN::IcosahedralSym::get_desc | ( | ) | const [inline, virtual] |
Get a description.
Implements EMAN::FactoryBase.
Definition at line 881 of file symmetry.h.
virtual int EMAN::IcosahedralSym::get_max_csym | ( | ) | const [inline, virtual] |
Gets the maximum symmetry of this object.
This is used by OrientationGenerators, and is probably not something a general user would utilize.
Implements EMAN::Symmetry3D.
Definition at line 887 of file symmetry.h.
virtual string EMAN::IcosahedralSym::get_name | ( | ) | const [inline, virtual] |
Return IcosahedralSym::NAME.
Implements EMAN::FactoryBase.
Definition at line 876 of file symmetry.h.
References NAME.
00876 { return NAME; };
virtual int EMAN::IcosahedralSym::get_nsym | ( | ) | const [inline, virtual] |
Gets the total number of unique roational symmetry operations associated with this symmetry For icosahedral symmetry, this is 60.
Implements EMAN::Symmetry3D.
Definition at line 901 of file symmetry.h.
Transform IcosahedralSym::get_sym | ( | const int | n | ) | const [virtual] |
This function provides access to the unique rotational symmetries of an icosahedron.
We have placed the icosahedral symmetry group with a face along the z-axis. In all, there are 60 (accessed by get_nysm) unique rotational symmetric operations for the icosahedron.
n | the symmetric operation number. |
Implements EMAN::Symmetry3D.
Definition at line 1719 of file symmetry.cpp.
References get_az_alignment_offset().
01720 { 01721 // These rotations courtesy of Phil Baldwin 01722 static double lvl0=0.; // there is one pentagon on top; five-fold along z 01723 static double lvl1= 63.4349; // that is atan(2) // there are 5 pentagons with centers at this height (angle) 01724 static double lvl2=116.5651; //that is 180-lvl1 // there are 5 pentagons with centers at this height (angle) 01725 static double lvl3=180.0; 01726 01727 static double ICOS[180] = { // This is with a pentagon normal to z 01728 0,lvl0,0, 0,lvl0,288, 0,lvl0,216, 0,lvl0,144, 0,lvl0,72, 01729 0,lvl1,36, 0,lvl1,324, 0,lvl1,252, 0,lvl1,180, 0,lvl1,108, 01730 72,lvl1,36, 72,lvl1,324, 72,lvl1,252, 72,lvl1,180, 72,lvl1,108, 01731 144,lvl1,36, 144,lvl1,324, 144,lvl1,252, 144,lvl1,180, 144,lvl1,108, 01732 216,lvl1,36, 216,lvl1,324, 216,lvl1,252, 216,lvl1,180, 216,lvl1,108, 01733 288,lvl1,36, 288,lvl1,324, 288,lvl1,252, 288,lvl1,180, 288,lvl1,108, 01734 36,lvl2,0, 36,lvl2,288, 36,lvl2,216, 36,lvl2,144, 36,lvl2,72, 01735 108,lvl2,0, 108,lvl2,288, 108,lvl2,216, 108,lvl2,144, 108,lvl2,72, 01736 180,lvl2,0, 180,lvl2,288, 180,lvl2,216, 180,lvl2,144, 180,lvl2,72, 01737 252,lvl2,0, 252,lvl2,288, 252,lvl2,216, 252,lvl2,144, 252,lvl2,72, 01738 324,lvl2,0, 324,lvl2,288, 324,lvl2,216, 324,lvl2,144, 324,lvl2,72, 01739 0,lvl3,0, 0,lvl3,288, 0,lvl3,216, 0,lvl3,144, 0,lvl3,72 01740 }; 01741 01742 int idx = n % 60; 01743 Dict d("type","eman"); 01744 // Transform3D ret; 01745 if (get_az_alignment_offset() == 234.0) { 01746 d["az"] =(float)ICOS[idx * 3 ]+90; 01747 d["alt"] = (float)ICOS[idx * 3 + 1]; 01748 d["phi"] = (float)ICOS[idx * 3 + 2]-90; 01749 // ret.set_rotation((float)ICOS[idx * 3 ]+90,(float)ICOS[idx * 3 + 1], (float)ICOS[idx * 3 + 2]-90); 01750 } 01751 else { 01752 d["az"] =(float)(float)ICOS[idx * 3 ]; 01753 d["alt"] = (float)ICOS[idx * 3 + 1]; 01754 d["phi"] = (float)ICOS[idx * 3 + 2]; 01755 // ret.set_rotation((float)ICOS[idx * 3 ],(float)ICOS[idx * 3 + 1], (float)ICOS[idx * 3 + 2]); 01756 } 01757 01758 // ret.set_rotation((float)ICOS[idx * 3 ],(float)ICOS[idx * 3 + 1], (float)ICOS[idx * 3 + 2]); 01759 // if ( get_az_alignment_offset() != 0 ) { 01760 // Transform3D t(get_az_alignment_offset(),0,0); 01761 // ret = t*ret; 01762 // } 01763 return Transform(d); 01764 01765 }
static Symmetry3D* EMAN::IcosahedralSym::NEW | ( | ) | [inline, static] |
Factory support function NEW.
Definition at line 868 of file symmetry.h.
References IcosahedralSym().
00869 { 00870 return new IcosahedralSym(); 00871 }
IcosahedralSym& EMAN::IcosahedralSym::operator= | ( | const IcosahedralSym & | ) | [private] |
Disallow assignment.
const string IcosahedralSym::NAME = "icos" [static] |
The name of this class - used to access it from factories etc. Should be "icos".
Definition at line 912 of file symmetry.h.
Referenced by EMAN::PlatonicSym::get_delimiters(), and get_name().