[dbbox=<filespec>] | Input box database |
[imgbox=<filespec>] | Read box database from particle image set headers |
[auto[=<refs>,<thr1>,<thr2>,<thr3>]] | Autobox with defined thresholds |
[xform=<dx>,<dy>,<da>] | Rotate and translate the box database before output (see alignhuge) |
[newsize=<size>] | New box size for all boxes (center preserved) |
[input=<filespec>] | Image to be boxed (MRC format only!!!) |
[output=<filespec>] | Output file for boxed images |
[ctfout=<filespec>] | File to put CTF curves into (if input is focal pair merged) |
[dbout=<filespec>] | Output box database file |
[invert] | Invert the particle image before output |
batchboxer dbbox=jj0441.box input=jj0441.mrc output=0441.hed
This program does offline boxing of particles using a box database or an automatic boxing routine. Please note that it will work only on MRC images.