<input file> | File containing images to be centered |
[mask=<rad>] | Circular mask radius in pixels |
[maxshift=<pix>] | Maximum shift to use in centering |
cenalignacf start.hed mask=42 maxshift=8
This program centers a set of particles individually using an autocorrelation function. Clearly this works well only if the particles have a suitable shape in all orienations.