align2d

This program will align a set of images to a reference

align2d <fixed input> <input> <output> [fixn=<n>] [noflip] [precen] [seqali] [pgm] [log] [edgenorm]

Parameters:


<fixed input>Reference image
<input>Images to be aligned
<output>Output filename
[fixn=<n>]Image number to use in fixed input stack
[noflip]Rotational/translational alignment without flips
[precen]No translational alignment
[seqali]Align 1st image to ref, 2nd to 1st, 3rd to 2nd, etc.
[pgm]Output in pgm format, note there should only be one input in this case
[log]Logs rotations/translations to align.log
[edgenorm]Perform an edgenormalization of both images before alignment

Usage:

align2d proj.hed cls000.hed tst.hed

Description

Pretty self explanatory. If the input is a stack, the first image is used.


EMAN Manual page, generated Fri Feb 8 16:12:23 2002