<input file> | Source file |
<output file> | Destination file |
<n seg> | Number of segments to split map into |
[ampw] | Apply a straight line integral amplitude weight to the distance parameter |
[thr=<val>] | Only segment voxels above the given threshold |
[split] | Separate out the individual segments |
[maxit=<n>] | Specify maximum iterations before giving up on convergence |
[itxp=<n>] | After the segmentation, iteratively extend the segments into regions below threshold, n is the number of voxels of expansion |
[vector=<outfile>] | Write segment centers to a text file x,y,z,dx,dy,dz |
[gaussmod=<mrc out>] | Construct a 3d model from Gaussians centered at the group centers. |
[randomize] | This will randomize the gaussians by rotating them randomly with a fixed radius |
segment3d threed.1a.mrc seg.mrc 12 thr=1
This program will take a 3D map and attempt to intelligently split that map into 'segments'.
That is, every voxel in the map will be assigned to one of
EMAN Manual page, generated Tue Oct 8 21:38:48 2002