EMAN2
Namespaces | Defines
analyzer.cpp File Reference
#include <ctime>
#include <memory>
#include "emdata.h"
#include "analyzer.h"
#include "sparx/analyzer_sparx.h"
#include "util.h"
#include "cmp.h"
#include "sparx/lapackblas.h"
#include "sparx/varimax.h"
Include dependency graph for analyzer.cpp:

Go to the source code of this file.

Namespaces

namespace  EMAN
 

df3 file format (http://www.povray.org/documentation/view/3.6.1/374) Header: The df3 format consists of a 6 byte header of three 16-bit integers with high order byte first.


Defines

#define covmat(i, j)   covmat[ ((j)-1)*nx + (i)-1 ]
#define imgdata(i)   imgdata[ (i)-1 ]
#define eigvec(i, j)   eigvec[(j)*ncov + (i)]
#define qmat(i, j)   qmat[((j)-1)*kstep + (i) -1]
#define diag(i)   diag[(i)-1]
#define rdata(i)   rdata[(i)-1]
#define eigvec(i, j)   eigvec[((j)-1)*ncov + (i)-1]
#define eigval(i)   eigval[(i)-1]
#define TOL   1e-7
#define V(i, j)   V[((j)-1)*imgsize + (i) - 1]
#define v0(i)   v0[(i)-1]
#define Av(i)   Av[(i)-1]
#define subdiag(i)   subdiag[(i)-1]
#define diag(i)   diag[(i)-1]
#define hvec(i)   hvec[(i)-1]
#define eigvec(i, j)   eigvec[(j)*ncov + (i)]

Define Documentation

#define Av (   i)    Av[(i)-1]
#define covmat (   i,
 
)    covmat[ ((j)-1)*nx + (i)-1 ]

Definition at line 333 of file analyzer.cpp.

Referenced by EMAN::Util::coveig_for_py(), and EMAN::PointArray::do_pca().

#define diag (   i)    diag[(i)-1]
#define diag (   i)    diag[(i)-1]

Definition at line 582 of file analyzer.cpp.

#define eigval (   i)    eigval[(i)-1]
#define eigvec (   i,
 
)    eigvec[(j)*ncov + (i)]

Definition at line 839 of file analyzer.cpp.

#define eigvec (   i,
 
)    eigvec[(j)*ncov + (i)]
#define eigvec (   i,
 
)    eigvec[((j)-1)*ncov + (i)-1]

Definition at line 839 of file analyzer.cpp.

#define hvec (   i)    hvec[(i)-1]

Definition at line 583 of file analyzer.cpp.

Referenced by EMAN::PCAlarge::Lanczos().

#define imgdata (   i)    imgdata[ (i)-1 ]
#define qmat (   i,
 
)    qmat[((j)-1)*kstep + (i) -1]

Definition at line 471 of file analyzer.cpp.

Referenced by EMAN::PCAlarge::analyze().

#define rdata (   i)    rdata[(i)-1]
#define subdiag (   i)    subdiag[(i)-1]
#define TOL   1e-7
#define V (   i,
 
)    V[((j)-1)*imgsize + (i) - 1]
#define v0 (   i)    v0[(i)-1]