EMAN2
Class Index
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  A  
EMData (EMAN)   LaplacianProcessor (EMAN)   PeakOnlyProcessor (EMAN)   TagGroup (EMAN::GatanDM4)   
AboveToZeroProcessor (EMAN)   EMDataForCuda   MinShrinkProcessor::LessThan (EMAN)   PgmIO (EMAN)   TagGroup (EMAN::Gatan)   
AbsMaxMinAverager (EMAN)   EMFTGL (EMAN)   LinearPyramidProcessor (EMAN)   Phase180Processor (EMAN)   TagTable (EMAN::Gatan)   
AbsoluateValueProcessor (EMAN)   EMFTGL::EMFTGLFontInstance (EMAN)   LinearRampFourierProcessor (EMAN)   PhaseCmp (EMAN)   TagTable (EMAN::GatanDM4)   
ACFCenterProcessor (EMAN)   EMFTGL::EMFTGLManager (EMAN)   LinearRampProcessor (EMAN)   PhaseToCenterProcessor (EMAN)   TestImageAxes (EMAN)   
AddMaskShellProcessor (EMAN)   EmIO::EMHeader (EMAN)   LinearXformProcessor (EMAN)   PhaseToCornerProcessor (EMAN)   TestImageCirclesphere (EMAN)   
AddNoiseProcessor (EMAN)   EmIO (EMAN)   LocalNormProcessor (EMAN)   PhaseToMassCenterProcessor (EMAN)   TestImageCylinder (EMAN)   
AddRandomNoiseProcessor (EMAN)   EMObject (EMAN)   LodCmp (EMAN)   PifIO::PifColorMap (EMAN)   TestImageEllipse (EMAN)   
AddShapeProcessor (EMAN)   EMUtil (EMAN)   Log (EMAN)   PifIO::PifFileHeader (EMAN)   TestImageFourierNoiseGaussian (EMAN)   
AddSigmaNoiseProcessor (EMAN)   EvenOrientationGenerator (EMAN)   LoGFourierProcessor (EMAN)   PifIO::PifImageHeader (EMAN)   TestImageFourierNoiseProfile (EMAN)   
Aligner (EMAN)   ExpProcessor (EMAN)   LogProcessor (EMAN)   PifIO (EMAN)   TestImageGaussian (EMAN)   
AlignOptions   
  F  
LowpassAutoBProcessor (EMAN)   Pixel (EMAN)   TestImageGradient (EMAN)   
AmiraIO (EMAN)   Factory (EMAN)   LowpassRandomPhaseProcessor (EMAN)   PlatonicSym (EMAN)   TestImageHollowEllipse (EMAN)   
AmpweightFourierProcessor (EMAN)   FactoryBase (EMAN)   LstFastIO (EMAN)   Point3 (EMAN)   TestImageLineWave (EMAN)   
Analyzer (EMAN)   Util::FakeKaiserBessel (EMAN)   LstIO (EMAN)   point3d_t   TestImageNoiseGauss (EMAN)   
APMDopt   FakeKaiserBessel   
  M  
point_t (EMAN)   TestImageNoiseUniformRand (EMAN)   
APMQopt   MrcIO::FeiMrcExtHeader (EMAN)   MakeRadiusProcessor (EMAN)   PointArray (EMAN)   TestImageProcessor (EMAN)   
ApplyPolynomialProfileToHelix (EMAN)   MrcIO::FeiMrcHeader (EMAN)   MakeRadiusSquaredProcessor (EMAN)   PolarData (EMAN)   TestImagePureGaussian (EMAN)   
ApplySymProcessor (EMAN)   FFTProcessor (EMAN)   MarchingCubes (EMAN)   PriorityQueue (EMAN)   TestImageScurve (EMAN)   
AreaProcessor (EMAN)   FFTResampleProcessor (EMAN)   MaskEdgeMeanProcessor (EMAN)   Processor (EMAN)   TestImageSinewave (EMAN)   
assign_groups_comparator   file_store (EMAN)   MaskGaussInvProcessor (EMAN)   Projector (EMAN)   TestImageSinewaveCircular (EMAN)   
AutoMask2DProcessor (EMAN)   FileFourierProcessor (EMAN)   MaskGaussNonuniformProcessor (EMAN)   
  Q  
TestImageSphericalWave (EMAN)   
AutoMask3D2Processor (EMAN)   FiniteProcessor (EMAN)   MaskGaussProcessor (EMAN)   QuadMinDotCmp (EMAN)   TestImageSquarecube (EMAN)   
AutoMask3DProcessor (EMAN)   FitsIO (EMAN)   MaskNoiseProcessor (EMAN)   Quaternion (EMAN)   TestTomoImage (EMAN)   
AutoMaskAsymUnit (EMAN)   FlattenBackgroundProcessor (EMAN)   MaskSharpProcessor (EMAN)   
  R  
TestUtil (EMAN)   
AutoMaskDustProcessor (EMAN)   FlipProcessor (EMAN)   MaskSoftProcessor (EMAN)   RadialProcessor (EMAN)   TetrahedralSym (EMAN)   
Averager (EMAN)   FloatPoint (EMAN)   MatchSFProcessor (EMAN)   RampProcessor (EMAN)   tmpstruct   
AverageXProcessor (EMAN)   FloatSize (EMAN)   Matrix3 (EMAN)   Randnum (EMAN)   Util::tmpstruct (EMAN)   
Axis0FourierProcessor (EMAN)   FloorValueProcessor (EMAN)   Matrix4 (EMAN)   RandomOrientationGenerator (EMAN)   ToMassCenterProcessor (EMAN)   
  B  
FourierAnlProcessor (EMAN)   Maxclique   RangeThresholdProcessor (EMAN)   ToMinvalProcessor (EMAN)   
BackProjectionReconstructor (EMAN)   FourierGriddingProjector (EMAN)   MaxPixelOperator (EMAN)   RealPixelProcessor (EMAN)   TomoAverager (EMAN)   
BeamstopProcessor (EMAN)   FourierInserter3DMode1 (EMAN)   MaxShrinkProcessor (EMAN)   RealToFFTProcessor (EMAN)   TomoCccCmp (EMAN)   
BilateralProcessor (EMAN)   FourierInserter3DMode2 (EMAN)   MaxValProjector (EMAN)   RecipCarefullyProcessor (EMAN)   TomoFscCmp (EMAN)   
BinarizeFourierProcessor (EMAN)   FourierInserter3DMode3 (EMAN)   MeanShrinkProcessor (EMAN)   Reconstructor (EMAN)   TomoTiltAngleWeightProcessor (EMAN)   
BinarizeProcessor (EMAN)   FourierInserter3DMode5 (EMAN)   MeanZeroEdgeProcessor (EMAN)   ReconstructorVolumeData (EMAN)   TomoTiltEdgeMaskProcessor (EMAN)   
BinaryOperateProcessor (EMAN)   FourierInserter3DMode6 (EMAN)   MedianShrinkProcessor (EMAN)   Refine3DAlignerGrid (EMAN)   ToZeroProcessor (EMAN)   
BinarySkeletonizerProcessor (EMAN)   FourierInserter3DMode7 (EMAN)   methodName   Refine3DAlignerQuaternion (EMAN)   Transform (EMAN)   
BooleanProcessor (EMAN)   FourierInserter3DMode8 (EMAN)   MinMaxAverager (EMAN)   RefineAligner (EMAN)   TransformProcessor (EMAN)   
BooleanShrinkProcessor (EMAN)   FourierPixelInserter3D (EMAN)   MinPixelOperator (EMAN)   RefineAlignerCG (EMAN)   TranslationalAligner (EMAN)   
BoxingTools (EMAN)   FourierPlaneReconstructor (EMAN)   MinShrinkProcessor (EMAN)   Region (EMAN)   TransposeProcessor (EMAN)   
BoxMaxProcessor (EMAN)   FourierProcessor (EMAN)   MinusPeakProcessor (EMAN)   Rotate180Processor (EMAN)   TypeDict (EMAN)   
BoxMedianProcessor (EMAN)   FourierReconstructor (EMAN)   MirrorProcessor (EMAN)   RotateFlipAligner (EMAN)   
  U  
BoxSigmaProcessor (EMAN)   FourierReconstructorSimple2D (EMAN)   ModelEMCylinderProcessor (EMAN)   RotateFlipAlignerIterative (EMAN)   U3DWriter (EMAN)   
BoxStatProcessor (EMAN)   FourierToCenterProcessor (EMAN)   ModelHelixProcessor (EMAN)   RotateInFSProcessor (EMAN)   UnevenMatrix (EMAN)   
BoxSVDClassifier (EMAN)   FourierToCornerProcessor (EMAN)   MrcIO::MrcHeader (EMAN)   RotatePrecenterAligner (EMAN)   Util (EMAN)   
BPKT   FourierWeightAverager (EMAN)   MrcIO (EMAN)   RotateTranslateAligner (EMAN)   
  V  
ByteOrder (EMAN)   FRCCmp (EMAN)   
  N  
RotateTranslateAlignerIterative (EMAN)   V4L2IO (EMAN)   
  C  
FRM2DAligner (EMAN)   NewBandpassGaussProcessor (EMAN)   RotateTranslateAlignerPawel (EMAN)   ValuePowProcessor (EMAN)   
CccCmp (EMAN)   FSCFourierProcessor (EMAN)   NewBandpassTanhProcessor (EMAN)   RotateTranslateBestAligner (EMAN)   ValueSqrtProcessor (EMAN)   
CCDNormProcessor (EMAN)   
  G  
NewBandpassTopHatProcessor (EMAN)   RotateTranslateFlipAligner (EMAN)   ValueSquaredProcessor (EMAN)   
ccf_point   Gatan2IO::Gatan2Header (EMAN)   newfile_store (EMAN)   RotateTranslateFlipAlignerIterative (EMAN)   varimax (EMAN)   
ccf_value   Gatan2IO (EMAN)   NewFourierProcessor (EMAN)   RotateTranslateFlipAlignerPawel (EMAN)   Vec2 (EMAN)   
ChaoProjector (EMAN)   GaussFFTProjector (EMAN)   NewHighpassButterworthProcessor (EMAN)   RotateTranslateFlipScaleAligner (EMAN)   Vec3 (EMAN)   
cilist   Gaussian   NewHighpassGaussProcessor (EMAN)   RotateTranslateFlipScaleAlignerIterative (EMAN)   Vec4 (EMAN)   
CircularMaskProcessor (EMAN)   Util::Gaussian (EMAN)   NewHighpassTanhProcessor (EMAN)   RotateTranslateScaleAligner (EMAN)   Vector3 (EMAN)   
ClampingProcessor (EMAN)   TomoTiltEdgeMaskProcessor::GaussianFunctoid (EMAN)   NewHighpassTopHatProcessor (EMAN)   RotateTranslateScaleAlignerIterative (EMAN)   Vector4 (EMAN)   
EMData::ClipInplaceVariables (EMAN)   GLUtil (EMAN)   NewHomomorphicButterworthProcessor (EMAN)   RotationalAligner (EMAN)   Maxclique::Vertices::Vertex   
Cmp (EMAN)   GradientPlaneRemoverProcessor (EMAN)   NewHomomorphicGaussProcessor (EMAN)   RotationalAlignerIterative (EMAN)   VerticalStripeProcessor (EMAN)   
cmpang   GradientRemoverProcessor (EMAN)   NewHomomorphicTanhProcessor (EMAN)   RotationalAverageProcessor (EMAN)   Maxclique::Vertices   
CollapseProcessor (EMAN)   MaxShrinkProcessor::GreaterThan (EMAN)   NewHomomorphicTopHatProcessor (EMAN)   RotationalSubstractProcessor (EMAN)   Volume (wustl_mm::SkeletonMaker)   
Maxclique::ColorClass   gridPoint (wustl_mm::SkeletonMaker)   NewInverseGaussProcessor (EMAN)   RT3DGridAligner (EMAN)   VolumeData (wustl_mm::SkeletonMaker)   
ColorRGBGenerator (EMAN)   GridQueue (wustl_mm::SkeletonMaker)   NewLowpassButterworthProcessor (EMAN)   RT3DSphereAligner (EMAN)   VolumeSkeletonizer (wustl_mm::GraySkeletonCPP)   
ComplexNormPixel (EMAN)   GridQueue2 (wustl_mm::SkeletonMaker)   NewLowpassGaussProcessor (EMAN)   RT3DSymmetryAligner (EMAN)   VtkIO (EMAN)   
ComplexPixelProcessor (EMAN)   gridQueueEle (wustl_mm::SkeletonMaker)   NewLowpassTanhProcessor (EMAN)   RTFExhaustiveAligner (EMAN)   
  W  
Dict::const_iterator (EMAN)   
  H  
NewLowpassTopHatProcessor (EMAN)   RTFSlowExhaustiveAligner (EMAN)   WatershedProcessor (EMAN)   
ConvolutionKernelProcessor (EMAN)   HighpassAutoPeakProcessor (EMAN)   NewRadialTableProcessor (EMAN)   
  S  
WaveletProcessor (EMAN)   
ConvolutionProcessor (EMAN)   HistogramBin (EMAN)   nn4_ctf_rectReconstructor (EMAN)   SaffOrientationGenerator (EMAN)   Wiener2DAutoAreaProcessor (EMAN)   
CoordinateMaskFileProcessor (EMAN)   HSym (EMAN)   nn4_ctfReconstructor (EMAN)   SalIO (EMAN)   Wiener2DFourierProcessor (EMAN)   
CoordinateProcessor (EMAN)   
  I  
nn4_ctfwReconstructor (EMAN)   ScaleAligner (EMAN)   WienerFourierReconstructor (EMAN)   
CSym (EMAN)   Icosahedral2Sym (EMAN)   nn4_rectReconstructor (EMAN)   ScaleAlignerABS (EMAN)   WSsortlist   
Ctf (EMAN)   IcosahedralSym (EMAN)   nn4Reconstructor (EMAN)   ScaleTransformProcessor (EMAN)   
  X  
CTF_Processor (EMAN)   IcosIO::IcosHeader (EMAN)   nnSSNR_ctfReconstructor (EMAN)   ScreenPoint (EMAN)   UnevenMatrix::Xdim (EMAN)   
ctf_store   IcosIO (EMAN)   nnSSNR_Reconstructor (EMAN)   ScreenVector (EMAN)   XGradientProcessor (EMAN)   
ctf_store_new   ImageAverager (EMAN)   NonConvexProcessor (EMAN)   SerIO::SerHeader (EMAN)   XplorIO (EMAN)   
CtfCAutoAverager (EMAN)   ImageIO (EMAN)   NormalizeByMassProcessor (EMAN)   SerIO (EMAN)   XYData (EMAN)   
CtfCWautoAverager (EMAN)   ImageProcessor (EMAN)   NormalizeCircleMeanProcessor (EMAN)   SetSFProcessor (EMAN)   XYZAligner (EMAN)   
CtfSimProcessor (EMAN)   ImageScore (EMAN)   NormalizeEdgeMeanProcessor (EMAN)   ShapeAnalyzer (EMAN)   XYZAverager (EMAN)   
CTFSNRWeightProcessor (EMAN)   ImageSort (EMAN)   NormalizeLREdgeMeanProcessor (EMAN)   SHIFTProcessor (EMAN)   XYZCmp (EMAN)   
CUDA_Aligner (EMAN)   ImagicIO2::Imagic4D (EMAN)   NormalizeMaskProcessor (EMAN)   SigmaProcessor (EMAN)   XYZIO (EMAN)   
CUDA_multiref_aligner (EMAN)   ImagicIO::ImagicHeader (EMAN)   NormalizeMaxMinProcessor (EMAN)   SigmaZeroEdgeProcessor (EMAN)   XYZProcessor (EMAN)   
CudaPeakInfo   ImagicIO (EMAN)   NormalizeProcessor (EMAN)   Util::sincBlackman (EMAN)   XYZProjector (EMAN)   
CudaPeakInfoFloat   ImagicIO2 (EMAN)   NormalizeRampNormVar (EMAN)   sincBlackman   XYZReconstructor (EMAN)   
CustomVector (EMAN)   IndexMaskFileProcessor (EMAN)   NormalizeRowProcessor (EMAN)   SingleSpiderIO (EMAN)   
  Y  
CutoffBlockProcessor (EMAN)   InertiaMatrixAnalyzer (EMAN)   NormalizeStdProcessor (EMAN)   SitusIO (EMAN)   YGradientProcessor (EMAN)   
CutToZeroProcessor (EMAN)   Interp (EMAN)   NormalizeToLeastSquareProcessor (EMAN)   SmartMaskProcessor (EMAN)   
  Z  
  D  
IntPoint (EMAN)   NormalizeUnitProcessor (EMAN)   SNREvalProcessor (EMAN)   ZeroConstantProcessor (EMAN)   
d_ang   IntSize (EMAN)   NormalizeUnitSumProcessor (EMAN)   SNRProcessor (EMAN)   ZeroEdgePlaneProcessor (EMAN)   
DataType (EMAN::GatanDM4)   IntTranslateProcessor (EMAN)   NSigmaClampingProcessor (EMAN)   SpiderIO::SpiderHeader (EMAN)   ZeroEdgeRowProcessor (EMAN)   
DataType (EMAN::Gatan)   InverseKaiserI0Processor (EMAN)   
  O  
SpiderIO (EMAN)   ZGradientProcessor (EMAN)   
DecayEdgeProcessor (EMAN)   InverseKaiserSinhProcessor (EMAN)   OctahedralSym (EMAN)   SqEuclideanCmp (EMAN)   
  _  
Df3IO (EMAN)   PawelProjector::IPCube (EMAN)   olist   StandardProjector (EMAN)   _BadAllocException (EMAN)   
Dict (EMAN)   Isosurface (EMAN)   OmapIO::OmapHeader (EMAN)   stcom_   _EmptyContainerException (EMAN)   
DiffBlockProcessor (EMAN)   IterationAverager (EMAN)   OmapIO (EMAN)   Maxclique::StepCount   _FileAccessException (EMAN)   
DirectionalSumProcessor (EMAN)   Dict::iterator (EMAN)   OptimumOrientationGenerator (EMAN)   StripeXYProcessor (EMAN)   _ImageDimensionException (EMAN)   
DistanceSegmentProcessor (EMAN)   IterBinMaskProcessor (EMAN)   OptSubCmp (EMAN)   SubtractOptProcessor (EMAN)   _ImageFormatException (EMAN)   
DM3IO (EMAN)   IterMultiMaskProcessor (EMAN)   OptVarianceCmp (EMAN)   SVDAnalyzer (EMAN)   _ImageReadException (EMAN)   
DM4IO (EMAN)   
  K  
ori_t   SymAlignProcessor (EMAN)   _ImageWriteException (EMAN)   
DoGFourierProcessor (EMAN)   Util::KaiserBessel (EMAN)   OrientationGenerator (EMAN)   SymAlignProcessorQuat (EMAN)   _InvalidCallException (EMAN)   
DotCmp (EMAN)   KaiserBessel   
  P  
Symmetry3D (EMAN)   _InvalidParameterException (EMAN)   
DSym (EMAN)   Util::KaiserBessel::kbi0_win (EMAN)   PaintProcessor (EMAN)   SymSearchProcessor (EMAN)   _InvalidStringException (EMAN)   
  E  
KaiserBessel::kbi0_win   XYData::Pair (EMAN)   
  T  
_InvalidValueException (EMAN)   
E2Exception (EMAN)   KaiserBessel::kbsinh_win   PawelProjector (EMAN)   t_BPCQ_line   _NotExistingObjectException (EMAN)   
EMAN1Ctf (EMAN)   Util::KaiserBessel::kbsinh_win (EMAN)   PCA (EMAN)   TagData (EMAN::GatanDM4)   _NullPointerException (EMAN)   
EMAN2Ctf (EMAN)   KMeansAnalyzer (EMAN)   PCAlarge (EMAN)   TagData (EMAN::Gatan)   _OutofRangeException (EMAN)   
EmanOrientationGenerator (EMAN)   KmeansSegmentProcessor (EMAN)   PCAsmall (EMAN)   TagEntry (EMAN::GatanDM4)   _TypeException (EMAN)   
EMArray (EMAN)   
  L  
PDBReader (EMAN)   TagEntry (EMAN::Gatan)   _UnexpectedBehaviorException (EMAN)   
EMConsts (EMAN)   
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