EMAN2
Defines
pca.cpp File Reference
#include "emdata.h"
#include "util.h"
#include "emutil.h"
#include "pca.h"
#include "lapackblas.h"
Include dependency graph for pca.cpp:

Go to the source code of this file.

Defines

#define qmat(i, j)   qmat[((j)-1)*kstep + (i) -1]
#define diag(i)   diag[(i)-1]
#define TOL   1e-7
#define V(i, j)   V[((j)-1)*imgsize + (i) - 1]
#define v0(i)   v0[(i)-1]
#define Av(i)   Av[(i)-1]
#define subdiag(i)   subdiag[(i)-1]
#define diag(i)   diag[(i)-1]
#define hvec(i)   hvec[(i)-1]
#define TOL   1e-7
#define v(i)   v[(i) - 1]
#define resid(i)   resid[(i) - 1]
#define Av(i)   Av[(i)-1]
#define subdiag(i)   subdiag[(i)-1]
#define diag(i)   diag[(i)-1]

Define Documentation

#define Av (   i)    Av[(i)-1]

Definition at line 447 of file pca.cpp.

#define Av (   i)    Av[(i)-1]

Definition at line 447 of file pca.cpp.

#define diag (   i)    diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define diag (   i)    diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define diag (   i)    diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define hvec (   i)    hvec[(i)-1]

Definition at line 293 of file pca.cpp.

Referenced by EMAN::PCA::Lanczos().

#define qmat (   i,
 
)    qmat[((j)-1)*kstep + (i) -1]

Definition at line 104 of file pca.cpp.

Referenced by EMAN::PCA::dopca_lan(), and EMAN::PCA::dopca_ooc().

#define resid (   i)    resid[(i) - 1]

Definition at line 446 of file pca.cpp.

Referenced by EMAN::PCA::Lanczos_ooc().

#define subdiag (   i)    subdiag[(i)-1]

Definition at line 448 of file pca.cpp.

#define subdiag (   i)    subdiag[(i)-1]

Definition at line 448 of file pca.cpp.

#define TOL   1e-7

Definition at line 444 of file pca.cpp.

#define TOL   1e-7

Definition at line 444 of file pca.cpp.

#define V (   i,
 
)    V[((j)-1)*imgsize + (i) - 1]

Definition at line 288 of file pca.cpp.

Referenced by EMAN::PCA::Lanczos().

#define v (   i)    v[(i) - 1]

Definition at line 445 of file pca.cpp.

Referenced by EMAN::PriorityQueue< ValueT, KeyT >::add(), EMAN::FourierWeightAverager::add_image(), EMAN::RTFSlowExhaustiveAligner::align(), EMAN::ShapeAnalyzer::analyze(), EMAN::InertiaMatrixAnalyzer::analyze(), ang_diff(), EMAN::Vec2< Type >::as_list(), EMAN::Vec3< int >::as_list(), EMAN::Quaternion::as_list(), Maxclique::Vertices::at(), bmv_(), EMAN::EMAN1Ctf::calc_amplitude(), EMAN::EMData::calc_highest_locations(), EMAN::EMData::calc_n_highest_locations(), EMAN::EMData::calc_radial_dist(), cauchy_(), cmprlb_(), EMAN::EMAN2Ctf::compute_1d_fromimage(), EMAN::EMAN2Ctf::compute_2d_complex(), EMAN::EMAN1Ctf::compute_2d_complex(), EMAN::EMData::compute_missingwedge(), create_transform(), EMAN::cross(), wustl_mm::SkeletonMaker::Volume::curveSkeleton(), EMAN::EMData::cut_slice(), Maxclique::Vertices::dispose(), EMAN::dot(), EMAN::Processor::EMFourierFilterFunc(), EMAN::TestUtil::emobject_farray_to_py(), EMAN::TestUtil::emobject_strarray_to_py(), EMAN::TestUtil::emobject_transformarray_to_py(), Maxclique::Vertices::end(), EMAN::EMData::extract_box(), EMAN::PointArray::fit_helix(), EMAN::EMAN2Ctf::from_string(), GCVmin_Tik(), EMAN::EMUtil::get_all_attributes(), EMAN::PlatonicSym::get_asym_unit_triangles(), EMAN::DSym::get_asym_unit_triangles(), EMAN::CSym::get_asym_unit_triangles(), get_data_as_vector(), EMAN::TestUtil::get_debug_transform(), EMAN::EMUtil::get_euler_names(), EMAN::Transform::get_params(), EMAN::Transform::get_params_inverse(), EMAN::EMData::get_rotated_clip(), EMAN::Transform::get_trans(), EMAN::Transform::get_trans_2d(), EMAN::Util::group_proj_by_phitheta(), EMAN::TestTomoImage::insert_rectangle(), EMAN::PCA::Lanczos_ooc(), mainlb_(), EMAN::EMUtil::make_image_median(), EMAN::PointArray::mask(), EMAN::PointArray::mask_asymmetric_unit(), EMAN::EMData::mask_contig_region(), EMAN::EMData::max_3D_pixel_error(), EMAN::Util::nearest_ang(), EMAN::Util::nearestk_to_refdir(), EMAN::Vec3< int >::operator vector< Type2 >(), EMAN::Symmetry3D::point_in_which_asym_unit(), EMAN::Util::point_is_in_triangle_2d(), EMAN::WatershedProcessor::process(), EMAN::KmeansSegmentProcessor::process(), EMAN::TestImageEllipse::process_inplace(), EMAN::TestImageHollowEllipse::process_inplace(), EMAN::SymSearchProcessor::process_inplace(), EMAN::AutoMaskAsymUnit::process_inplace(), EMAN::MeanZeroEdgeProcessor::process_inplace(), EMAN::SigmaZeroEdgeProcessor::process_inplace(), EMAN::ExpProcessor::process_pixel(), EMAN::MaxValProjector::project3d(), EMAN::StandardProjector::project3d(), Maxclique::Vertices::push(), EMAN::EMData::read_images(), EMAN::EMData::read_images_ext(), EMAN::PriorityQueue< ValueT, KeyT >::remove(), EMAN::PointArray::right_transform(), EMAN::PDBReader::right_transform(), EMAN::EMData::set_attr_python(), Maxclique::Vertices::set_degrees(), EMAN::Region::set_depth(), EMAN::PointArray::set_from(), EMAN::PointArray::set_from_density_map(), EMAN::Region::set_height(), EMAN::Region::set_origin(), set_value_at(), set_value_at_fast(), EMAN::Region::set_width(), shuffled_range(), slarf_(), Maxclique::Vertices::sort(), EMAN::PointArray::transform(), EMAN::EMData::update_stat(), EMAN::MrcIO::update_stats(), and Maxclique::Vertices::Vertices().

#define v0 (   i)    v0[(i)-1]

Definition at line 289 of file pca.cpp.

Referenced by EMAN::PCA::Lanczos().