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| Describe EMAN1/FAQ/Startnrclasses here. | '''Q:''' The class-averages produced by startnrclasses don't seem to show the number of particles in each class when displayed in the matrix view. How can we fix this ? |
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| My colleague installed the EMAN 1.8 on on of our linux box (SUSE). It semms to work properly but I realize when I run startnrclasses and I wanted to display strartnrclasses.hed file in matrix view even I selected to show # of particles per class, the number was not displayed (instead correct number only 1 is displayed). According his description there was no problem or error during the installation. | '''A:''' Hi. Two points here. First, you should ''really'' consider using refine2d.py rather than startnrclasses. startnrclasses is really only suitable for bootstrapping the refine2d.py process, or getting a very rough view of characteristic views of your particles. |
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| Do you have any suggestions? It is annoying to check the correct numbers in cls***.lst files… Thank you very much |
With respect to the actual question, you are right, this certainly should not happen. Please try installing a current snapshot version of EMAN (rather than 1.8) and see if that clears up the problem. If not please email details of the system and installation to sludtke@bcm.edu, and we'll try to help you debug the problem. |
Q: The class-averages produced by startnrclasses don't seem to show the number of particles in each class when displayed in the matrix view. How can we fix this ?
A: Hi. Two points here. First, you should really consider using refine2d.py rather than startnrclasses. startnrclasses is really only suitable for bootstrapping the refine2d.py process, or getting a very rough view of characteristic views of your particles.
With respect to the actual question, you are right, this certainly should not happen. Please try installing a current snapshot version of EMAN (rather than 1.8) and see if that clears up the problem. If not please email details of the system and installation to sludtke@bcm.edu, and we'll try to help you debug the problem.