|
Size: 761
Comment: converted to 1.6 markup
|
Size: 1520
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 4: | Line 4: |
| * [[EMAN2/BoxSize|Particle box-size and refinement speed, what size to use]] | |
| Line 5: | Line 6: |
| * [[Eman2DataStorage|Data storage conventions, and the internal database (what is BDB: ?)]] | * [[Eman2DataStorage|File Formats, Data storage conventions, and the internal database (what is BDB: ?)]] |
| Line 7: | Line 8: |
| * [[EMAN2/TransformConventions|Transformations in the context of projections, reconstructions, and in general]] | * [[Eman2TransformInPython|Transformations in the context of projections, reconstructions, and in general]] |
| Line 11: | Line 12: |
=== Information on specific files used in 3-D single particle refinement === This documents the contents of all of the files produced by running e2refine.py in one of the refine_xx directories. * [[EMAN2/ProjectionFiles|Map projection files (projections_xx, proj_stg1_xx)]] * [[EMAN2/SimmxFiles|Similarity matrix image files (simmx_xx, simmx_stg1_xx, proj_simmx_xx)]] * [[EMAN2/ClassmxFiles|Classification matrix image files (classify_xx)]] * [[EMAN2/ClsResultFiles|Class-Averaging Results matrix image files (cls_result_xx)]] * [[EMAN2/ThreedFiles|3-D reconstructions (threed_xx, threed_filt_xx, threed_mask_xx)]] {{attachment:single_image_iso_c.png}} |
EMAN2 Concepts and Conventions
File Formats, Data storage conventions, and the internal database (what is BDB: ?)
Transformations in the context of projections, reconstructions, and in general
Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project
Information on specific files used in 3-D single particle refinement
This documents the contents of all of the files produced by running e2refine.py in one of the refine_xx directories.
Similarity matrix image files (simmx_xx, simmx_stg1_xx, proj_simmx_xx)
3-D reconstructions (threed_xx, threed_filt_xx, threed_mask_xx)
