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| = Compiling and Installing EMAN2 = '''Most users, even 'advanced' users should select a binary install.''' If the binaries don't work for you for some reason (please [[mailto:sludtke@bcm.edu|let us know]], or if you need to write new low-level image processing functions, then you can resort to a source-based installation.) |
= Installing EMAN2 / SPHIRE = The new EMAN2.2/ SPHIRE 1.0 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary. |
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| EMAN2 uses an increasingly popular approach of writing all of the main computationally intensive image processing operations in C++, but writing all of the user programs, including those with GUIs (graphical user interfaces) in a scripting language called [[http://www.python.org|Python]]. All of these Python level programs can be edited by the end-user WITHOUT requiring a C++ development environment. Note that most users won't want or need even this level of customization. | [[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE here]]. |
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| === Binary Installation === * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries]] |
=== Binary Installation (most users should do this) === * [[EMAN2/Install/BinaryInstallAnaconda|Installing EMAN2 / SPHIRE binaries, EMAN2.2 / SPHIRE 1.0 and later (NEW)]] * [[EMAN2/Install/BinaryInstallAnaconda/2.31| 2.31 / 1.3]] * [[EMAN2/Install/BinaryInstallAnaconda/2.3| 2.3 / 1.2]] * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22 / 1.1]] * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21 / 1.0]] * [[EMAN2/Install/BinaryInstallAnaconda/2.2|2.2 / 1.0beta]] * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries, pre 2.2]] |
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| * [[http://blake.bcm.tmc.edu/eman/eman2/INSTALL|EMAN2's non-wiki installation instructions]] (Linux) * [[EMAN2/COMPILE_EMAN2_LINUX|Compile EMAN2 on Linux]] * [[EMAN2/COMPILE_EMAN2_WINDOWS|Compile EMAN2 with Visual Studio .NET 2005 on Windows XP]] * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X]] * [[EMAN2/ExternalLibraries|External libraries needed for EMAN2 compilation]] |
* EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Anaconda (Linux and OSX)]] (recommended) * [[EMAN2/COMPILE_EMAN2_ANACONDA|daily]] * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.31|EMAN 2.31 SPHIRE 1.3]] ==== For older versions ==== * [[EMAN2/COMPILE_EMAN2_LINUX|Compile EMAN2 on Linux]] | EMAN2's [[http://blake.bcm.tmc.edu/eman/eman2/INSTALL|non-wiki]] installation instructions * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Anaconda]] (older version) * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]] (not recommended) * [[COMPILE_EMAN2_VS2008|Compile EMAN2 with Visual Studio 2008 on Win7 32bit]] * [[EMAN2/COMPILE_EMAN2_WINDOWS|Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)]] |
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| * [[EMAN2/FAQ/Py_initModule4_64|I try to run eman2 script, got error like "ImportError: ....libboost....: undefined symbol: Py_InitModule4_64", what does that mean?]] * [[EMAN2/FAQ/EMAN2Mandriva2009Segfault|I compiled EMAN2 on Mandriva 2009, everything looks OK, but I got segmentation fault when I try to run e2display.py or e2boxer.py.]] * More installation FAQs can be found on the [[EMAN2/FAQ|FAQs]] page. |
* [[EMAN2/FAQ/International|Does EMAN2 support Internationalization/other language conventions ?]] * [[EMAN2/FAQ/ClusterInstall|Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?]] * [[EMAN2/FAQ/UseEman2_OSX|EMAN2 installed under OSX doesn't work properly. Any suggestions?]] * [[EMAN2/FAQ/UseEman2_Windows|EMAN2 installed under Windows doesn't work properly. Any suggestions?]] |
Installing EMAN2 / SPHIRE
The new EMAN2.2/ SPHIRE 1.0 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
Binary Installation (most users should do this)
Compiling from Source and Setting Up a C++ Development Environment
EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2
Compile EMAN2 with Anaconda (Linux and OSX) (recommended)
For older versions
Compile EMAN2 on Linux | EMAN2's non-wiki installation instructions
Compile EMAN2 on OS X with Anaconda (older version)
Compile EMAN2 on OS X with Homebrew (not recommended)
Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)
FAQ
How do I know my EMAN2 installation or compilation is successful?
Does EMAN2 support Internationalization/other language conventions ?
Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?
EMAN2 installed under OSX doesn't work properly. Any suggestions?
EMAN2 installed under Windows doesn't work properly. Any suggestions?
