Differences between revisions 37 and 69 (spanning 32 versions)
Revision 37 as of 2017-01-25 00:05:19
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Editor: SteveLudtke
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Revision 69 as of 2022-10-30 00:08:54
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Editor: TunayDurmaz
Comment: conda install eman-dev
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= Installing EMAN2 =
The new EMAN2.2 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
= Installing EMAN2 / SPHIRE =
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[[http://ncmi.bcm.tmc.edu/ncmi/software/software_details?selected_software=counter_222|Download EMAN2 here]]. === Conda Installation of eman-dev ===

 1. [[EMAN2/COMPILE_EMAN2_ANACONDA#Initial_Setup_.28one_time.29|Install Miniconda and mamba]].
 1. Run
 {{{#!highlight bash
  mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
  conda activate eman-dev
}}}
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 * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries]]
[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE binaries here]].

 * Install EMAN2 / SPHIRE binaries
   * [[EMAN2/Install/BinaryInstallAnaconda/2.91 |2.91 / 1.4]]
   * [[EMAN2/Install/BinaryInstallAnaconda |Unstable / nightly / continuous]]
 * Install EMAN2 / SPHIRE binaries, previous versions
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31|2.31 / 1.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3 |2.3 / 1.2]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22 / 1.1]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21 / 1.0]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.2 |2.2 / 1.0beta]]
 * [[EMAN2/Install/BinaryInstall|Install EMAN2 binaries, pre 2.2]]
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 * To get EMAN2 source, please go to GitHub: [[http://github.com/cryoem/eman2]]
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EMAN2 source is hosted on [[http://github.com/cryoem/eman2|GitHub:cryoem/eman2]], follow instructions below:

 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Miniconda (Linux and OSX) (recommended)]]

==== For older versions ====
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 * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X]]
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]]
 * [[EMAN2/COMPILE_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Anaconda]] (older version)
 * [[EMAN2/BREW_EMAN2_MAC_OS_X|Compile EMAN2 on OS X with Homebrew]] (not recommended)
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=== FAQ === === FAQ (Outdated) ===

Installing EMAN2 / SPHIRE

Conda Installation of eman-dev

  1. Install Miniconda and mamba.

  2. Run
       1   mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
       2   conda activate eman-dev
    

Binary Installation (most users should do this)

Download EMAN2 / SPHIRE binaries here.

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is hosted on GitHub:cryoem/eman2, follow instructions below:

For older versions

FAQ (Outdated)

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EMAN2/Install (last edited 2024-09-13 17:36:10 by TunayDurmaz)