Differences between revisions 52 and 61 (spanning 9 versions)

Installing EMAN2 / SPHIRE

The new EMAN2.2/ SPHIRE 1.0 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.

Download EMAN2 / SPHIRE here.

Binary Installation (most users should do this)

Installing EMAN2 / SPHIRE binaries, EMAN2.31 / SPHIRE 1.3 and later (NEW)
- 2.39 / 1.3 (continuous / nightly)
- 2.31 / 1.3
Installing EMAN2 / SPHIRE binaries, up to EMAN2.3 / SPHIRE 1.2
Installing EMAN2 binaries, pre 2.2

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2
Compile EMAN2 with Miniconda (Linux and OSX) (recommended)
- EMAN 2.39 SPHIRE 1.3 (latest source code)
- EMAN 2.31 SPHIRE 1.3

For older versions

Compile EMAN2 on Linux | EMAN2's non-wiki installation instructions
Compile EMAN2 on OS X with Anaconda (older version)
Compile EMAN2 on OS X with Homebrew (not recommended)
Compile EMAN2 with Visual Studio 2008 on Win7 32bit
Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)

-  ⇤ ← Revision 52 as of 2019-08-29 08:32:35 → 
  Size: 2715
  Editor: MarkusStabrin
  Comment: Change name to 2.31
+   ← Revision 61 as of 2020-12-15 18:06:19 → ⇥
  Size: 2826
  Editor: TunayDurmaz
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-= Installing EMAN2 =
The new EMAN2.2 binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
+= Installing EMAN2 / SPHIRE =
The new EMAN2.2/ SPHIRE 1.0  binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
 Line 4:
-[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 here]].
+[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE here]].
 Line 7:
- * [[EMAN2/Install/BinaryInstallAnaconda|Installing EMAN2 binaries, EMAN2.2 and later (NEW)]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31|2.31]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3|2.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.2|2.2]]
+ * Installing EMAN2 / SPHIRE binaries, EMAN2.31 / SPHIRE 1.3 and later (NEW)
   * [[EMAN2/Install/BinaryInstallAnaconda/2.39| 2.39 / 1.3 (continuous / nightly)]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31| 2.31 / 1.3]]
 * Installing EMAN2 / SPHIRE binaries, up to EMAN2.3 / SPHIRE 1.2
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3| 2.3 / 1.2]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.22|2.22 / 1.1]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.21|2.21 / 1.0]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.2|2.2 / 1.0beta]]
-Line 16:
+Line 18:
- * EMAN2 source is on GitHub (detailed instructions below): http://github.com/cryoem/eman2
 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Anaconda (Linux and OSX)]] (recommended)
   * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.31|2.31]]
   * [[EMAN2/COMPILE_EMAN2_ANACONDA|2.2]]
+ * EMAN2 source is on [[http://github.com/cryoem/eman2|GitHub]] (detailed instructions below): http://github.com/cryoem/eman2
 * Compile EMAN2 with Miniconda (Linux and OSX) (recommended)
   * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.39|EMAN 2.39 SPHIRE 1.3 (latest source code)]]
   * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.31|EMAN 2.31 SPHIRE 1.3]]
-Line 27:
+Line 29:
-=== Build System Documentation (Work-In-Progress) ===
 * [[EMAN2/BUILD_SYSTEM_ANACONDA|Build, Package, Distribute with Conda, Constructor, Anaconda]]

Installing EMAN2 / SPHIRE

Binary Installation (most users should do this)

Compiling from Source and Setting Up a C++ Development Environment

For older versions

FAQ