Differences between revisions 59 and 69 (spanning 10 versions)

Installing EMAN2 / SPHIRE

Conda Installation of eman-dev

Install Miniconda and mamba.
Run
```
   1   mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
   2   conda activate eman-dev
```

Binary Installation (most users should do this)

Download EMAN2 / SPHIRE binaries here.

Install EMAN2 / SPHIRE binaries
- 2.91 / 1.4
- Unstable / nightly / continuous
Install EMAN2 / SPHIRE binaries, previous versions
Install EMAN2 binaries, pre 2.2

Compiling from Source and Setting Up a C++ Development Environment

EMAN2 source is hosted on GitHub:cryoem/eman2, follow instructions below:

Compile EMAN2 with Miniconda (Linux and OSX) (recommended)

For older versions

Compile EMAN2 on Linux | EMAN2's non-wiki installation instructions
Compile EMAN2 on OS X with Anaconda (older version)
Compile EMAN2 on OS X with Homebrew (not recommended)
Compile EMAN2 with Visual Studio 2008 on Win7 32bit
Compile EMAN2 with Visual Studio .NET 2005 on Windows XP (OBSOLETE)

-  ⇤ ← Revision 59 as of 2020-12-05 20:08:20 → 
  Size: 2717
  Editor: TunayDurmaz
  Comment: continuous / nightly
+   ← Revision 69 as of 2022-10-30 00:08:54 → ⇥
  Size: 2566
  Editor: TunayDurmaz
  Comment: conda install eman-dev
-Deletions are marked like this.
+Additions are marked like this.
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-The new EMAN2.2/ SPHIRE 1.0  binaries for recent OS versions are more heavily optimized than previous releases (and less backwards compatible). Still, it may be possible to achieve a 10-20% additional speedup if you setup GCC6 and compile with optimize-machine on a recent Linux version. Compiling from source on Linux is much easier than the other platforms. For Mac and Windows users, we strongly suggest using a binary.
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-[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE here]].
+=== Conda Installation of eman-dev ===

 1. [[EMAN2/COMPILE_EMAN2_ANACONDA#Initial_Setup_.28one_time.29|Install Miniconda and mamba]].
 1. Run
 {{{#!highlight bash
  mamba create -n eman-dev eman-dev -c cryoem -c conda-forge
  conda activate eman-dev
}}}
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- * Installing EMAN2 / SPHIRE binaries, EMAN2.2 / SPHIRE 1.0 and later (NEW)
   * [[EMAN2/Install/BinaryInstallAnaconda/2.39| continuous / nightly]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31| 2.31 / 1.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3| 2.3 / 1.2]]
+[[https://cryoem.bcm.edu/cryoem/downloads/view_eman2_versions|Download EMAN2 / SPHIRE binaries here]].

 * Install EMAN2 / SPHIRE binaries
   * [[EMAN2/Install/BinaryInstallAnaconda/2.91 |2.91  / 1.4]]
   * [[EMAN2/Install/BinaryInstallAnaconda     |Unstable / nightly / continuous]]
 * Install EMAN2 / SPHIRE binaries, previous versions
   * [[EMAN2/Install/BinaryInstallAnaconda/2.31|2.31 / 1.3]]
   * [[EMAN2/Install/BinaryInstallAnaconda/2.3 |2.3  / 1.2]]
-Line 13:
+Line 25:
-   * [[EMAN2/Install/BinaryInstallAnaconda/2.2|2.2 / 1.0beta]]
 * [[EMAN2/Install/BinaryInstall|Installing EMAN2 binaries, pre 2.2]]
+   * [[EMAN2/Install/BinaryInstallAnaconda/2.2 |2.2  / 1.0beta]]
 * [[EMAN2/Install/BinaryInstall|Install EMAN2 binaries, pre 2.2]]
-Line 17:
+Line 29:
- * EMAN2 source is on [[http://github.com/cryoem/eman2|GitHub]] (detailed instructions below): http://github.com/cryoem/eman2
 * Compile EMAN2 with Miniconda (Linux and OSX) (recommended)
   * [[EMAN2/COMPILE_EMAN2_ANACONDA|Latest source code]]
   * [[EMAN2/COMPILE_EMAN2_ANACONDA/2.31|EMAN 2.31 SPHIRE 1.3]]
+EMAN2 source is hosted on [[http://github.com/cryoem/eman2|GitHub:cryoem/eman2]], follow instructions below:

 * [[EMAN2/COMPILE_EMAN2_ANACONDA|Compile EMAN2 with Miniconda (Linux and OSX) (recommended)]]
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-=== FAQ ===
+=== FAQ (Outdated) ===