Differences between revisions 17 and 30 (spanning 13 versions)
Revision 17 as of 2008-10-02 03:58:50
Size: 1085
Editor: SteveLudtke
Comment:
Revision 30 as of 2011-07-05 04:01:52
Size: 1925
Editor: SteveLudtke
Comment:
Deletions are marked like this. Additions are marked like this.
Line 2: Line 2:
 * [:EMAN2DevFAQ:EMAN2 developer's FAQ]
 * [:Eman2ProgQuickstart:EMAN2 programming quickstart]
 * [:Eman2DataStorage:EMAN2 data storage, format conversion and local database]
 * [:Eman2Metadata:Parameters/Metadata stored in EMData objects and on Disk]
 * [:Eman2UsingFTGL:Using FTGL in python/EMAN2]
 * [:Eman2TransformInPython:Using the Transform object in python/EMAN2]
 * [:Eman2FactoriesInPython: Abstract factories in python/EMAN2]
 * [:EMAN1To2Translation:Limited Table of translations from EMAN1 functions -> EMAN2]
 * [http://blake.bcm.edu/eman2/doxygen_html/ Autogenerated Python/C++ Documentation (Doxygen)]

==== Introductory concepts ====
 * [[EMAN2PythonStyleGuide|EMAN2 Python Programming Style Guide]]
 * [[Eman2ProgQuickstart|EMAN2 python programming quickstart]]
 * [[EMAN2ImageFormats|Image Formats in EMAN2]]
 * [[Eman2DataStorage|EMAN2 data storage & format conversion]]
 * [[Eman2BdbStorage|EMAN2 BDB access from Python]]
 * [[Eman2Metadata|Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr]]
 * [[Eman2AppMetadata|Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project]]
 * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]]
 * Specific object types
  * [[Eman2TransformInPython|Using the Transform object (python) (arbitrary 2-D and 3-D transformations)]]
  * [[Eman2Reconstructors|Using Reconstructor classes]]

==== Intermediate Concepts ====
 * [[Eman2CProgQuickstart|EMAN2 C++ programming quickstart]]
 * [[Eman2ProgOverview|How to add new capabilities to EMAN2 in C++]]
 * [[Eman2UsingFTGL|Using FTGL in python/EMAN2]]

==== Advanced Topics ====
 * [[Eman2UsingCudaFromC++|The EMData class and CUDA ]]
 * [[Eman2FactoriesInPython| Abstract factories in python/EMAN2]]

==== Detailed Documentation on all Classes/Methods/Functions ====
 * [[http://blake.bcm.edu/eman2/doxygen_html/|Autogenerated Python/C++ Documentation (Doxygen)]]
Line 15: Line 31:

{{attachment:sphere_cylinder_dist_grey_c.png}}

Documentation for Python or C++ Programmers

Introductory concepts

Intermediate Concepts

Advanced Topics

Detailed Documentation on all Classes/Methods/Functions

  • Autogenerated Python/C++ Documentation (Doxygen)

    • There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
    • The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
    • There are a few classes like analyzers and reconstructors which are not methods of EMData
    • Many utility functions are static members of EMUtil

sphere_cylinder_dist_grey_c.png

EMAN2/Library (last edited 2023-01-02 19:26:26 by TunayDurmaz)