e2refinetorelion3d Tutorial

Basic Information

This tutorial is designed with 2 assumptions in mind:

That the user has installed Relion on their local machine. Though we do not run the relion_refine program on a local machine, several scripts from the Relion installation package are used to prepare the EMAN2 data for a Relion run. Relion can be downloaded here
That the user has fully completed an EMAN2 refinement. This program draws from many files in the EMAN2 directory structure and was designed to rely on these files existing.

Tutorial

The first thing to do, assuming you've installed Relion and run an EMAN2 reconstruction is to open up the Project Manager:

e2projectmanager.py

EMAN2 Project Manager

Once you open up the project manager, select the plus (+) next to the 3D refinement tab and you will see several new options appear. The option we want to select is the "Relion 3D Refinement" option.

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This opens up three tabs in the viewing window: GUI, Command, and Help. 'GUI' contains the options for e2refinetorelion3d.py, 'Command' is the command that will be executed when the user launches the program, and 'Help' is the help text associated with e2refinetorelion3d.py. In the 'GUI' window, there are several sections of options. The first set options you will see are the I/O options.

I/O Options

EMAN2/Programs/e2refinetorelion3d/e2refinetorelion3dtutorial (last edited 2014-05-28 18:44:44 by StephenMurray)

-  ⇤ ← Revision 15 as of 2013-01-23 21:18:36 → 
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+   ← Revision 18 as of 2013-01-23 21:27:51 → ⇥
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-==== Basic Information ====
+=== Basic Information ===
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-==== Tutorial ====
+=== Tutorial ===
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-The first thing to do, assuming you've installed Relion and run an EMAN2 reconstruction is to open up the [[EMAN2/Programs/e2projectmanager|project manager]]:
+The first thing to do, assuming you've installed Relion and run an EMAN2 reconstruction is to open up the [[EMAN2/Programs/e2projectmanager|Project Manager]]:
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-This opens up three tabs in the viewing window: GUI, Command, and Help. 'GUI' contains the options for ''e2refinetorelion3d.py'', 'Command' is the command that will be executed when the user launches the program, and 'Help' is the help text associated with ''e2refinetorelion3d.py'
+This opens up three tabs in the viewing window: GUI, Command, and Help. 'GUI' contains the options for ''e2refinetorelion3d.py'', 'Command' is the command that will be executed when the user launches the program, and 'Help' is the help text associated with ''e2refinetorelion3d.py''. In the 'GUI' window, there are several sections of options. The first set options you will see are the I/O options.

==== I/O Options ====