|
Size: 463
Comment: converted to 1.6 markup
|
Size: 1643
Comment: maybe a typo within the filename?
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| This page has links to very short demos/tutorials in EMAN2. | = EMAN2 TUTORIALS = |
| Line 3: | Line 3: |
| == Using e2.py == | == Beginners (introductory tutorials) == ==== 2D single particle analysis (SPA) ==== * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]]) * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]] ==== 3D single particle tomography (SPT) ==== * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop]. [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]] * '''this is not a valid pdf file''', but it is accessible with openoffice ==== 2D assessment of heterogeneity ==== * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] == Advanced (EMAN2 through the ''e2.py'' Python prompt) == |
| Line 6: | Line 23: |
| * [[EMAN2/Tutorials/RotateTranslate|Rotate and translate an image]] | * [[EMAN2/Tutorials/RotateTranslate|Rotate, translate, scale or mirror an image]] |
| Line 8: | Line 25: |
| * [[EMAN2/Tutorials/AddAndMultiply|Add images, and multiply by a constant]] | * [[EMAN2/Tutorials/AddAndMultiply|Add and multiply images, add and multiply by constants]] |
| Line 12: | Line 29: |
| * [[EMAN2/Tutorials/iter_pixels|Iterate through the pixels of an image]] * [[EMAN2/Tutorials/make_a_projection|Make a projection of a 3D model, project through the asymmetric unit]] {{attachment:2d_image_3dplot_2.png}} |
EMAN2 TUTORIALS
Beginners (introductory tutorials)
2D single particle analysis (SPA)
The old SPR tutorial - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01
3D single particle tomography (SPT)
- NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
this is not a valid pdf file, but it is accessible with openoffice
2D assessment of heterogeneity
Advanced (EMAN2 through the ''e2.py'' Python prompt)
* Generate and display an EMAN2 test image
* Rotate, translate, scale or mirror an image
* Add and multiply images, add and multiply by constants
* Convert a real/imaginary image into an amplitude/phase image and vice versa
* Iterate through the pixels of an image
* Make a projection of a 3D model, project through the asymmetric unit
