Differences between revisions 16 and 51 (spanning 35 versions)

EMAN2 TUTORIALS

Beginners (introductory tutorials)

2D single particle analysis (SPA)

The old SPR tutorial - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01

3D single particle tomography (SPT)

NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial from the 2011 EMAN2 workshop].
e2spt_users_guide.pdf

2D assessment of heterogeneity

Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

* Change log level in EMAN2

-  ⇤ ← Revision 16 as of 2009-02-04 21:11:45 → 
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-This page has links to very short demos/tutorials in EMAN2.
+= EMAN2 TUTORIALS =
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-== Using e2.py ==
+== Beginners (introductory tutorials) ==

==== 2D single particle analysis (SPA) ====

 * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])

 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]]

==== 3D single particle tomography (SPT) ====
 * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial from the 2011 EMAN2 workshop]. 
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]


==== 2D assessment of heterogeneity ====
 * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]]

== Advanced (EMAN2 through the ''e2.py'' Python prompt) ==
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-* [[EMAN2/Tutorials/RotateTranslate|Rotate and translate an image]]
+* [[EMAN2/Tutorials/RotateTranslate|Rotate, translate, scale or mirror an image]]
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+* [[EMAN2/Tutorials/iter_pixels|Iterate through the pixels of an image]]

* [[EMAN2/Tutorials/make_a_projection|Make a projection of a 3D model, project through the asymmetric unit]]

{{attachment:2d_image_3dplot_2.png}}