Differences between revisions 12 and 30 (spanning 18 versions)

EMEN2 Dependencies

EMEN2 is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)

Python 2.6+
- Note: do not use Python 3.0+
- http://www.python.org
Berkeley DB 5.0.x
- BDB is the storage and transactional backend for EMEN2
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.oracle.com/technology/software/products/berkeley-db/index.html
bsddb3 5.0.x
- Python bindings for Berkeley DB
- Note: Relatively recent 4.8.2x release are probably OK as well
- http://www.jcea.es/programacion/pybsddb.htm
- "easy_install bsddb3"
Mako Templates (latest)
- A simple, fast templating system for Python
- http://www.makotemplates.org/
- "easy_install mako"
Twisted 10.x+
- An event-driven networking engine written in Python
- http://twistedmatrix.com/trac/
- "easy_install twisted"
Markdown
- Simplified rich-text editing
- "easy_install Markdown"

Optional

EMAN2 (recommended)
- EMAN2 is optionally used to generate browsable micrograph previews.
- http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
Matplotlib (recommended)
- Plotting support
- Note: commonly installed with EMAN2
- "easy_install matplotlib"
ImageMagick (recommended)
- Thumbnail and document preview support
- Commonly installed on Linux
- http://www.imagemagick.org/
pyOpenSSL
- Network encryption
- "easy_install pyOpenSSL"

-  ⇤ ← Revision 12 as of 2010-03-29 10:02:29 → 
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+   ← Revision 30 as of 2010-09-22 06:59:38 → ⇥
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-Deletions are marked like this.
+Additions are marked like this.
 Line 5:
-If I have specified a version, it is the minimum version I have tested EMEN2 with. I cannot guarantee success with versions earlier than noted.
+ * Python 2.6+
  * Note: do not use Python 3.0+
  * http://www.python.org
-Line 7:
+Line 9:
+ * Berkeley DB 5.0.x
  * BDB is the storage and transactional backend for EMEN2
  * Note: Relatively recent 4.8.2x release are probably OK as well
  * http://www.oracle.com/technology/software/products/berkeley-db/index.html
-Line 8:
+Line 14:
-* Python 2.5+
 (note: do not use Python 3.0)
 http://www.python.org
+ * bsddb3 5.0.x
  * Python bindings for Berkeley DB
  * Note: Relatively recent 4.8.2x release are probably OK as well  
  * http://www.jcea.es/programacion/pybsddb.htm
  * "easy_install bsddb3"
-Line 12:
+Line 20:
+ * Mako Templates (latest)
  * A simple, fast templating system for Python
  * http://www.makotemplates.org/ 
  * "easy_install mako"
-Line 13:
+Line 25:
-* Berkeley DB 4.8.24+
 BDB is the storage and transactional backend for EMEN2
 http://www.oracle.com/technology/software/products/berkeley-db/index.html
+ * Twisted 10.x+
  * An event-driven networking engine written in Python
  * http://twistedmatrix.com/trac/ 
  * "easy_install twisted"
-Line 17:
+Line 30:
+ * Markdown
  * Simplified rich-text editing
  * "easy_install Markdown"
-Line 18:
+Line 34:
-* bsddb3 4.8.4+ (latest)
 Python bindings for Berkeley DB
 http://www.jcea.es/programacion/pybsddb.htm
 "easy_install bsddb3"
+== Optional ==
-Line 23:
+Line 36:
+ * EMAN2 (recommended)
  * EMAN2 is optionally used to generate browsable micrograph previews.
  * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
-Line 24:
+Line 40:
-* Mako Templates (latest)
 A simple, fast templating system for Python
 http://www.makotemplates.org/
 "easy_install makotemplates"
+ * Matplotlib (recommended)
  * Plotting support
  * Note: commonly installed with EMAN2
  * "easy_install matplotlib"
-Line 29:
+Line 45:
+ * ImageMagick (recommended)
  * Thumbnail and document preview support
  * Commonly installed on Linux
  * http://www.imagemagick.org/
-Line 30:
+Line 50:
-* demjson (latest)
 A fast, compliant JSON module
 http://deron.meranda.us/python/demjson/
 "easy_install demjson"
 * note: EMEN2 may use the Python json standard library in the future


* Twisted 10.x+
 An event-driven networking engine written in Python
 http://twistedmatrix.com/trac/
 "easy_install twisted"


* PyYAML (latest)
 Configuration file is YAML-based
 "easy_install yaml"


* pyOpenSSL
 Network encryption
 "easy_install pyOpenSSL"


* EMAN2
 EMAN2 is optionally used to generate browsable micrograph previews.
 http://ncmi.bcm.edu/ncmi/software/counter_222/software_86
+ * pyOpenSSL
  * Network encryption 
  * "easy_install pyOpenSSL"