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| If I have specified a version, it is the minimum version I have tested EMEN2 with. I cannot guarantee success with versions earlier than noted. | * Python 2.6+ * Note: do not use Python 3.0+ * http://www.python.org |
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| * Berkeley DB 5.0.x * BDB is the storage and transactional backend for EMEN2 * Note: Relatively recent 4.8.2x release are probably OK as well * http://www.oracle.com/technology/software/products/berkeley-db/index.html |
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| * Python 2.5+ (note: do not use Python 3.0) http://www.python.org |
* bsddb3 5.0.x * Python bindings for Berkeley DB * Note: Relatively recent 4.8.2x release are probably OK as well * http://www.jcea.es/programacion/pybsddb.htm * "easy_install bsddb3" |
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| * Mako Templates (latest) * A simple, fast templating system for Python * http://www.makotemplates.org/ * "easy_install mako" |
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| * Berkeley DB 4.8.24+ BDB is the storage and transactional backend for EMEN2 * Note: I have not tested Berkeley DB 5.x http://www.oracle.com/technology/software/products/berkeley-db/index.html |
* Twisted 10.x+ * An event-driven networking engine written in Python * http://twistedmatrix.com/trac/ * "easy_install twisted" |
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| * Markdown * Simplified rich-text editing * "easy_install Markdown" |
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| * bsddb3 4.8.4+ (latest) Python bindings for Berkeley DB * Note: I have not tested Berkeley DB 5.x http://www.jcea.es/programacion/pybsddb.htm "easy_install bsddb3" |
== Optional == |
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| * pyOpenSSL * Network encryption * "easy_install pyOpenSSL" |
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| * Mako Templates (latest) A simple, fast templating system for Python http://www.makotemplates.org/ "easy_install makotemplates" |
* EMAN2 (recommended) * EMAN2 is optionally used to generate browsable micrograph previews. * http://ncmi.bcm.edu/ncmi/software/counter_222/software_86 |
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* demjson (latest) A fast, compliant JSON module http://deron.meranda.us/python/demjson/ "easy_install demjson" * note: EMEN2 may use the Python json standard library in the future * Twisted 10.x+ An event-driven networking engine written in Python http://twistedmatrix.com/trac/ "easy_install twisted" * PyYAML (latest) Configuration file is YAML-based "easy_install yaml" * pyOpenSSL Network encryption "easy_install pyOpenSSL" * EMAN2 EMAN2 is optionally used to generate browsable micrograph previews. http://ncmi.bcm.edu/ncmi/software/counter_222/software_86 |
* Matplotlib * Plotting support * Note: commonly installed with EMAN2 * "easy_install matplotlib" |
EMEN2 Dependencies
EMEN2 is dependent on several other packages. With the exception of Python, which is generally up to date and well-packaged on most systems, I recommend downloading the latest version from the project's site and installing it, or using easy_install for the package if possible. (Linux/Mac package management systems often have out of date software.)
- Python 2.6+
- Note: do not use Python 3.0+
- Berkeley DB 5.0.x
- BDB is the storage and transactional backend for EMEN2
- Note: Relatively recent 4.8.2x release are probably OK as well
http://www.oracle.com/technology/software/products/berkeley-db/index.html
- bsddb3 5.0.x
- Python bindings for Berkeley DB
- Note: Relatively recent 4.8.2x release are probably OK as well
- "easy_install bsddb3"
- Mako Templates (latest)
- A simple, fast templating system for Python
- "easy_install mako"
- Twisted 10.x+
- An event-driven networking engine written in Python
- "easy_install twisted"
- Markdown
- Simplified rich-text editing
- "easy_install Markdown"
Optional
- pyOpenSSL
- Network encryption
- "easy_install pyOpenSSL"
- EMAN2 (recommended)
- EMAN2 is optionally used to generate browsable micrograph previews.
- Matplotlib
- Plotting support
- Note: commonly installed with EMAN2
- "easy_install matplotlib"