== Michael Bell, Ludtke Lab (2014 - 2019) ==

All are welcome to use the materials provided here. Credit is greatly appreciated but not required.

=== Thesis ===

[[attachment:thesis.pdf]], [[attachment:thesis.tex]]

=== Thesis Defense Presentation ===

[[attachment:defense_slides.key]]

'''Note:''' The presenter notes in this file contain a full transcription of my talk.

=== Posters ===

2019 Sealy Symposium for Structural Biology and Molecular Biophysics & 2018 Keck ARC 2018: 
 [[attachment:cryoet_poster.pptx]]

Keck Annual Research Conference 2017: [[attachment:keck_arc_2017.pdf]]

Biophysical Society Meeting 2017: [[attachment:biophysical_society_2017.pdf]]

2016 Biochemistry departmental retreat: [[attachment:biochem_retreat_2016.pdf]]

2016 Structural & Computational Biology and Molecular Biophysics Graduate Program Retreat: [[attachment:scbmb_retreat_2016.pdf]]

=== Talks ===

Slides from the 2015 EMDatabank map/model challenge wrap up meeting: [[attachment:mapchallenge_wrapup_2017.key]]

Slides from the 2018 Microscopy & Microanalysis meeting on the EMAN2 cryoET workflow: [[attachment:microscopy_microanalysis_2018.ppt]]

Slides from 2018 Quantitative and Computational Biosciences annual retreat on motion correction: [[attachment:qcbarc2018.key]]

=== Select Thesis Figures ===

Please see my thesis for corresponding figure captions.


'''Structural biology overview'''

{{attachment:struct_bio.png||width=400}}

'''Transmission electron microscopes (TEM)'''

{{attachment:tem.png||width=400}}

'''TEM grids'''

{{attachment:grid.png||width=400}}

'''Movie-mode imaging'''

{{attachment:movie.png||width=400}}

'''Basic image processing'''

{{attachment:imgproc.png||width=400}}

'''Fourier transforms'''

{{attachment:fft.png||width=400}}

'''Single particle analysis''' 

{{attachment:spa.png||width=400}}

'''Contrast transfer function (CTF)'''

{{attachment:ctf.png||width=400}}

'''Gold Standard resolution measurement via Fourier Shell Correlation (FSC)''' 

{{attachment:fsc.png||width=400}}

'''Electron cryo-tomography (cryoET)''' 

{{attachment:cryoet.png||width=400}}

'''Subtomogram Averaging'''

{{attachment:subtomoavg.png||width=400}}