<fixed input> | Reference image |
<input> | Images to be aligned |
<output> | Output filename |
[noflip] | Rotational/translational alignment without flips |
[pgm] | Output in pgm format, note there should only be one input in this case |
[log] | Logs rotations/translations to align.log |
[edgenorm] | Perform an edgenormalization of both images before alignment |
align2d proj.hed cls000.hed tst.hed
Pretty self explanatory.