clean3d

This program uses make3diter and proc3d to iteratively make models match class averages

clean3d <classes> <3d model> [sym=<sym>] [proc=<nproc>] [3dit=<n iter>] [3dit2=<n iter>]

Parameters:


<classes>File with class averages
<3d model>Preliminary 3d model to clean up
[sym=<sym>]Symmetry specification
[proc=<nproc>]Number of processors to use
[3dit=<n iter>]Number of 'normal' cleaning iterations
[3dit2=<n iter>]Number of 'zeroing' cleaning iterations

Usage:

clean3d classes.5.img threed.5a.img sym=d7 3dit=2 3dit2=2

Description

This program performs iterative real-space refinement to make a 3D model more closely match a set of class-averages. There are 2 versions of the routine. The '3dit=' routine simply tries for the 'median' match. The '3dit2=' routine drives the densities to zero as much as is permitted by the class averages.


EMAN Manual page, generated Mon Jan 10 23:35:08 2000