procpdb.py

This program is for performing simple operations on PDB files

procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [apix=<A/pix>] [split] [include=[helix,sheet,other]

Parameters:


Description

Simple program for manipulating PDB files in the EMAN convention


EMAN Manual page, generated Fri Apr 23 14:33:30 2004
<infile>Input file
[<outfile>]Output file
[rot=<alt,az,phi>]Rotation in EMAN convention
[trans=<dx,dy,dz>]Translate (before rotation)
[posttrans=<dx,dy,dz>]Post-translation
[centeratoms]Center based on the mean atom position
[centerelec]Center based on the center of electron charge
[centermass]Center based on the center of mass
[apix=<A/pix>]multiply trans by apix
[split]Split file at TER records. Results imperfect.
[include=[helix,sheet,other][include=[helix,sheet,other]]