| input file | Any even, cubic MRC file |
| apix | Angstroms/pixel |
| da | angular search step, default=5 |
| percen | correlation value at which helices are generated |
| Normalize | Normalizes input map using proc3d option, deafult=disabled | ||||||||
| Correlation |
Runs cross correlation function prior to segmentation, helix identification and display, deafult=disabled | ||||||||
| Bilateral Filter | Pre-processing input map using the bilteral filter
option in proc3d, default=disabled
|
| Apply | Executes helixhunter with desired inputs and options within Chimera |
| Close | Exits helixhunter submenu |
| Help | Launch this help window |
| hh-*.iv | helixhunter output in inventor format |
| hh-*.pdb | helixhunter output in PDB format |
| hh-*.sse |
helixhunter output in DejaVu format |
| int-*.txt | intermediate results from correlation step (*-coeff.mrc contains raw correlation values) |