#include <processor.h>
Inheritance diagram for EMAN::FileFourierProcessor:
Public Member Functions | |
virtual void | process_inplace (EMData *image) |
To process an image in-place. | |
virtual string | get_name () const |
Get the processor's name. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
static Processor * | NEW () |
Static Public Attributes | |
static const string | NAME = "eman1.filter.byfile" |
filename | file name for a 2 column text file which specified a radial function data array |
Definition at line 5096 of file processor.h.
virtual string EMAN::FileFourierProcessor::get_desc | ( | ) | const [inline, virtual] |
Get the descrition of this specific processor.
This function must be overwritten by a subclass.
Implements EMAN::Processor.
Definition at line 5106 of file processor.h.
virtual string EMAN::FileFourierProcessor::get_name | ( | ) | const [inline, virtual] |
Get the processor's name.
Each processor is identified by a unique name.
Implements EMAN::Processor.
Definition at line 5101 of file processor.h.
References NAME.
05102 { 05103 return NAME; 05104 }
virtual TypeDict EMAN::FileFourierProcessor::get_param_types | ( | ) | const [inline, virtual] |
Get processor parameter information in a dictionary.
Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor.
Definition at line 5116 of file processor.h.
References EMAN::TypeDict::put(), and EMAN::EMObject::STRING.
05117 { 05118 TypeDict d; 05119 d.put("filename", EMObject::STRING, "file name for a 2 column text file which specified a radial function data array."); 05120 return d; 05121 }
static Processor* EMAN::FileFourierProcessor::NEW | ( | ) | [inline, static] |
Definition at line 5111 of file processor.h.
05112 { 05113 return new FileFourierProcessor(); 05114 }
void FileFourierProcessor::process_inplace | ( | EMData * | image | ) | [virtual] |
To process an image in-place.
For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
image | The image to be processed. |
Implements EMAN::Processor.
Definition at line 5751 of file processor.cpp.
References EMAN::EMData::apply_radial_func(), EMAN::EMData::do_fft(), EMAN::EMData::do_ift(), EMAN::EMData::get_xsize(), in, LOGERR, LOGWARN, and EMAN::Processor::params.
05752 { 05753 if (!image) { 05754 LOGWARN("NULL Image"); 05755 return; 05756 } 05757 const char *filename = params["filename"]; 05758 float apix = params["apix"]; 05759 05760 FILE *in = fopen(filename, "rb"); 05761 if (!in) { 05762 LOGERR("FileFourierProcessor: cannot open file '%s'", filename); 05763 return; 05764 } 05765 05766 float f = 0; 05767 int n = 0; 05768 while (fscanf(in, " %f %f", &f, &f) == 2) { 05769 n++; 05770 } 05771 rewind(in); 05772 05773 vector < float >xd(n); 05774 vector < float >yd(n); 05775 05776 float sf = apix * image->get_xsize(); 05777 05778 for (int i = 0; fscanf(in, " %f %f", &xd[i], &yd[i]) == 2; i++) { 05779 xd[i] *= sf; 05780 } 05781 05782 if (xd[2] - xd[1] != xd[1] - xd[0]) { 05783 LOGWARN("Warning, x spacing appears nonuniform %g!=%g\n", 05784 xd[2] - xd[1], xd[1] - xd[0]); 05785 } 05786 05787 EMData *d2 = image->do_fft(); 05788 if( image ) 05789 { 05790 delete image; 05791 image = 0; 05792 } 05793 05794 d2->apply_radial_func(xd[0], xd[1] - xd[0], yd, 1); 05795 image = d2->do_ift(); 05796 }
const string FileFourierProcessor::NAME = "eman1.filter.byfile" [static] |