EMAN::TestImageSinewaveCircular Class Reference

Replace a source image as a circular sine wave in specified wave length. More...

#include <processor.h>

Inheritance diagram for EMAN::TestImageSinewaveCircular:

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Collaboration diagram for EMAN::TestImageSinewaveCircular:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

static ProcessorNEW ()

Static Public Attributes

static const string NAME = "testimage.sinewave.circular"

Detailed Description

Replace a source image as a circular sine wave in specified wave length.

Parameters:
wavelength float this value is the d in function |sin(x/d)|
axis char (optional) specify a major axis for asymmetric features
c distance (optional) float between focus and the center of an ellipse
phase degree (optional) phase for sine wave, default is 0

Definition at line 6152 of file processor.h.


Member Function Documentation

virtual string EMAN::TestImageSinewaveCircular::get_desc (  )  const [inline, virtual]

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 6162 of file processor.h.

06163                 {
06164                         return "Replace a source image as a circular sine wave in specified wave length";
06165                 }

virtual string EMAN::TestImageSinewaveCircular::get_name (  )  const [inline, virtual]

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 6157 of file processor.h.

References NAME.

06158                 {
06159                         return NAME;
06160                 }

virtual TypeDict EMAN::TestImageSinewaveCircular::get_param_types (  )  const [inline, virtual]

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 6172 of file processor.h.

References EMAN::EMObject::FLOAT, EMAN::TypeDict::put(), and EMAN::EMObject::STRING.

06173                 {
06174                         TypeDict d;
06175                         d.put("wavelength", EMObject::FLOAT, "(required)this value is the d in function |sin(x/d)|, unit: pixel");
06176                         d.put("axis", EMObject::STRING, "specify a major axis for asymmetric features");
06177                         d.put("c", EMObject::FLOAT, "distance between focus and the center of an ellipse");
06178                         d.put("phase", EMObject::FLOAT, "(optional)phase for sine wave, default is 0");
06179                         return d;
06180                 }

static Processor* EMAN::TestImageSinewaveCircular::NEW (  )  [inline, static]

Definition at line 6167 of file processor.h.

06168                 {
06169                         return new TestImageSinewaveCircular();
06170                 }

void TestImageSinewaveCircular::process_inplace ( EMData image  )  [virtual]

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 7385 of file processor.cpp.

References EMAN::EMData::get_data(), InvalidValueException, EMAN::Processor::params, phase(), EMAN::TestImageProcessor::preprocess(), sqrt(), and EMAN::EMData::update().

07386 {
07387         preprocess(image);
07388 
07389         float wavelength = params["wavelength"];
07390         string axis = (const char*)params["axis"];
07391         float c = params["c"];
07392         float phase = params["phase"];
07393 
07394         float *dat = image->get_data();
07395         float r; //this is the distance of pixel from the image center(nx/2, ny/2, nz/2)
07396         float x2, y2, z2; //this is the coordinates of this pixel from image center
07397         for (int k = 0; k < nz; ++k) {
07398                 for (int j = 0; j < ny; ++j) {
07399                         for (int i = 0; i < nx; ++i, ++dat) {
07400                                 x2 = (float)( i - nx/2 );
07401                                 y2 = (float)( j - ny/2 );
07402                                 z2 = (float)( k - nz/2 );
07403                                 if(axis == ""){
07404                                         r = (float)sqrt(x2*x2+y2*y2+z2*z2);
07405                                 }
07406                                 else if(axis == "x"){
07407                                         float lc = -c;
07408                                         float rc = c;
07409                                         r = ( (float)sqrt((x2-lc)*(x2-lc)+y2*y2+z2*z2) +
07410                                                   (float)sqrt((x2-rc)*(x2-rc)+y2*y2+z2*z2) ) /2.0f - c;
07411                                 }
07412                                 else if(axis == "y"){
07413                                         float lc = -c;
07414                                         float rc = c;
07415                                         r = ( (float)sqrt(x2*x2+(y2-lc)*(y2-lc)+z2*z2) +
07416                                                   (float)sqrt(x2*x2+(y2-rc)*(y2-rc)+z2*z2) ) /2.0f - c;
07417                                 }
07418                                 else if(axis == "z"){
07419                                         if( nz == 1 ){
07420                                                 throw InvalidValueException(0, "This is a 2D image, no asymmetric feature for z axis");
07421                                         }
07422                                         float lc = -c;
07423                                         float rc = c;
07424                                         r = ( (float)sqrt(x2*x2+y2*y2+(z2-lc)*(z2-lc)) +
07425                                                   (float)sqrt(x2*x2+y2*y2+(z2-rc)*(z2-rc)) ) /2.0f - c;
07426                                 }
07427                                 else{
07428                                         throw InvalidValueException(0, "please specify a valid axis for asymmetric features");
07429                                 }
07430                                 *dat = sin( r * (2.0f*M_PI/wavelength) - phase*180/M_PI);
07431                         }
07432                 }
07433         }
07434 
07435         image->update();
07436 }


Member Data Documentation

const string TestImageSinewaveCircular::NAME = "testimage.sinewave.circular" [static]

Definition at line 6182 of file processor.h.

Referenced by get_name().


The documentation for this class was generated from the following files:
Generated on Mon Mar 7 18:10:45 2011 for EMAN2 by  doxygen 1.4.7