#include <processor.h>
Inheritance diagram for EMAN::FourierProcessor:


Public Member Functions | |
| void | process_inplace (EMData *image) |
| To process an image in-place. | |
| TypeDict | get_param_types () const |
| Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
| string | get_group_desc () |
| Get the description of this group of processors. | |
Protected Member Functions | |
| virtual void | preprocess (EMData *) |
| virtual void | create_radial_func (vector< float > &radial_mask) const =0 |
| cutoff_abs | Processor radius in terms of Nyquist (0-.5). | |
| cutoff_pixels | Width in Fourier pixels (0 - size()/2). | |
| cutoff_freq | Resolution in 1/A (0 - 1 / size*apix). | |
| apix | Override A/pix in the image header (changes x,y and z). |
Definition at line 336 of file processor.h.
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Implemented in EMAN::LinearRampFourierProcessor, EMAN::LinearRampProcessor, EMAN::LoGFourierProcessor, and EMAN::DoGFourierProcessor. Referenced by process_inplace(). |
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Get the description of this group of processors. This function is defined in a parent class. It gives a introduction to a group of processors.
Reimplemented from EMAN::Processor. Definition at line 341 of file processor.h. 00342 {
00343 return "Fourier Filter processors are a group of processor in the frequency domain. Before using such processors on an image, the image must be transformed from real space to the fourier space. FourierProcessor class is the base class of fourier space processors. Each specific processor is either a lowpass filter processor, or a highpass filter processor, or neighter. The unit of lowpass and highpass parameters are in terms of Nyquist, valid range is [0,0.5]. ";
00344 }
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Get processor parameter information in a dictionary. Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor. Reimplemented in EMAN::LinearRampProcessor, EMAN::LoGFourierProcessor, and EMAN::DoGFourierProcessor. Definition at line 346 of file processor.h. References EMAN::TypeDict::put(). 00347 {
00348 TypeDict d;
00349 d.put("cutoff_abs", EMObject::FLOAT, "Processor radius in terms of Nyquist (0-.5)");
00350 d.put("cutoff_pixels", EMObject::FLOAT, " Width in Fourier pixels (0 - size()/2)");
00351 d.put("cutoff_freq", EMObject::FLOAT, "Resolution in 1/A (0 - 1 / size*apix)");
00352 d.put("apix", EMObject::FLOAT, " Override A/pix in the image header (changes x,y and z)");
00353 return d;
00354 }
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Definition at line 357 of file processor.h. Referenced by process_inplace(). 00357 {}
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To process an image in-place. For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
Implements EMAN::Processor. Definition at line 539 of file processor.cpp. References EMAN::EMData::apply_radial_func(), create_radial_func(), EMAN::EMData::do_fft(), EMAN::EMData::do_ift(), FFTRADIALOVERSAMPLE, EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), EMAN::EMData::is_complex(), LOGWARN, preprocess(), and EMAN::EMData::update(). 00540 {
00541 if (!image) {
00542 LOGWARN("NULL Image");
00543 return;
00544 }
00545
00546 preprocess(image);
00547
00548 int array_size = FFTRADIALOVERSAMPLE * image->get_ysize();
00549 float step=0.5f/array_size;
00550
00551 vector < float >yarray(array_size);
00552
00553 create_radial_func(yarray);
00554
00555 if (image->is_complex()) {
00556 image->apply_radial_func(0, step, yarray);
00557 }
00558 else {
00559 EMData *fft = image->do_fft();
00560 fft->apply_radial_func(0, step, yarray);
00561 EMData *ift = fft->do_ift();
00562
00563 memcpy(image->get_data(),ift->get_data(),ift->get_xsize()*ift->get_ysize()*ift->get_zsize()*sizeof(float));
00564
00565 //ift->update(); Unecessary
00566
00567 if( fft )
00568 {
00569 delete fft;
00570 fft = 0;
00571 }
00572
00573 if( ift )
00574 {
00575 delete ift;
00576 ift = 0;
00577 }
00578 }
00579
00580 image->update();
00581 }
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1.3.9.1