Main Page | Modules | Namespace List | Class Hierarchy | Alphabetical List | Class List | Directories | File List | Namespace Members | Class Members | File Members

EMAN::MatchSFProcessor Class Reference

Sets the structure factor To match a second provided image/volume. More...

#include <processor.h>

Inheritance diagram for EMAN::MatchSFProcessor:

Inheritance graph
[legend]
Collaboration diagram for EMAN::MatchSFProcessor:

Collaboration graph
[legend]
List of all members.

Public Member Functions

virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "filter.matchto"

Protected Member Functions

void create_radial_func (vector< float > &radial_mask, EMData *image) const

Detailed Description

Sets the structure factor To match a second provided image/volume.

Parameters:
to EMData object to match to. Make sure apix values are set properly

Definition at line 5708 of file processor.h.


Member Function Documentation

void MatchSFProcessor::create_radial_func vector< float > &  radial_mask,
EMData image
const [protected, virtual]
 

Implements EMAN::FourierAnlProcessor.

Definition at line 6263 of file processor.cpp.

References EMAN::EMData::calc_radial_dist(), EMAN::EMData::do_fft(), EMAN::EMData::get_attr(), EMAN::XYData::get_yatx(), EMAN::EMData::get_ysize(), EMAN::EMData::is_complex(), EMAN::XYData::set_x(), EMAN::XYData::set_y(), and sqrt().

06263                                                                                           {
06264         // The radial mask comes in with the existing radial image profile
06265         // The radial mask runs from 0 to the 1-D Nyquist (it leaves out the corners in Fourier space)
06266 
06267         EMData *to = params["to"];
06268         XYData *sf = new XYData();
06269         float apixto = to->get_attr("apix_x");
06270 
06271 
06272         if (to->is_complex()) {
06273                 vector<float> rd=to->calc_radial_dist(to->get_ysize()/2.0f,0,1.0f,1);
06274                 for (size_t i=0; i<rd.size(); ++i) {
06275                         sf->set_x(i,i/(apixto*2.0f*rd.size()));
06276                         sf->set_y(i,rd[i]);
06277                 }
06278         }
06279         else {
06280                 EMData *tmp=to->do_fft();
06281                 vector<float> rd=tmp->calc_radial_dist(to->get_ysize()/2,0,1.0,1);
06282                 for (size_t i=0; i<rd.size(); ++i) {
06283                         sf->set_x(i,i/(apixto*2.0f*rd.size()));
06284                         sf->set_y(i,rd[i]);
06285                 }
06286                 delete tmp;
06287         }
06288 
06289         float apix=image->get_attr("apix_x");
06290 
06291 //      sf->write_file("a.txt");
06292 //      Util::save_data(0,sf->get_x(1),radial_mask,"b.txt");
06293 
06294         int n = radial_mask.size();
06295         for (int i=0; i<n; i++) {
06296                 if (radial_mask[i]>0) radial_mask[i]= sqrt(sf->get_yatx(i/(apix*2.0f*n),false)/radial_mask[i]);
06297                 else if (i>0) radial_mask[i]=radial_mask[i-1];
06298         }
06299 
06300 //      Util::save_data(0,sf->get_x(1),radial_mask,"c.txt");
06301 
06302         delete sf;
06303 }

virtual string EMAN::MatchSFProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5717 of file processor.h.

05718                 {
05719                         return "Filters the image so its 1-D power spectrum matches a second image";
05720                 }

virtual string EMAN::MatchSFProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5712 of file processor.h.

05713                 {
05714                         return NAME;
05715                 }

virtual TypeDict EMAN::MatchSFProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::FourierAnlProcessor.

Definition at line 5727 of file processor.h.

References EMAN::TypeDict::put().

05728                 {
05729                         TypeDict d;
05730                         d.put("to", EMObject::EMDATA, "The image to match with. Make sure apix values are correct.");
05731                         return d;
05732                 }

Processor* EMAN::MatchSFProcessor::NEW  )  [inline, static]
 

Definition at line 5722 of file processor.h.

05723                 {
05724                         return new MatchSFProcessor();
05725                 }


Member Data Documentation

const string MatchSFProcessor::NAME = "filter.matchto" [static]
 

Definition at line 186 of file processor.cpp.


The documentation for this class was generated from the following files:
Generated on Fri Aug 10 16:38:06 2012 for EMAN2 by  doxygen 1.3.9.1