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EMAN::RotateFlipAligner Class Reference
[a function or class that is CUDA enabled]

rotational and flip alignment More...

#include <aligner.h>

Inheritance diagram for EMAN::RotateFlipAligner:

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Collaboration diagram for EMAN::RotateFlipAligner:

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List of all members.

Public Member Functions

virtual EMDataalign (EMData *this_img, EMData *to_img, const string &cmp_name="dot", const Dict &cmp_params=Dict()) const
 To align 'this_img' with another image passed in through its parameters.
virtual EMDataalign (EMData *this_img, EMData *to_img) const
virtual string get_name () const
 Get the Aligner's name.
virtual string get_desc () const
virtual TypeDict get_param_types () const

Static Public Member Functions

AlignerNEW ()
TypeDict static_get_param_types ()

Static Public Attributes

const string NAME = "rotate_flip"

Detailed Description

rotational and flip alignment

Parameters:
imask 
rfp_mode Either 0,1 or 2. A temporary flag for testing the rotational foot print

Definition at line 716 of file aligner.h.


Member Function Documentation

virtual EMData* EMAN::RotateFlipAligner::align EMData this_img,
EMData to_img
const [inline, virtual]
 

Implements EMAN::Aligner.

Definition at line 721 of file aligner.h.

References align().

00722                 {
00723                         return align(this_img, to_img, "dot", Dict());
00724                 }

EMData * RotateFlipAligner::align EMData this_img,
EMData to_img,
const string &  cmp_name = "dot",
const Dict cmp_params = Dict()
const [virtual]
 

To align 'this_img' with another image passed in through its parameters.

The alignment uses a user-given comparison method to compare the two images. If none is given, a default one is used.

Parameters:
this_img The image to be compared.
to_img 'this_img" is aligned with 'to_img'.
cmp_name The comparison method to compare the two images.
cmp_params The parameter dictionary for comparison method.
Returns:
The aligned image.

Implements EMAN::Aligner.

Definition at line 1000 of file aligner.cpp.

References EMAN::EMData::align(), EMAN::EMData::cmp(), EMAN::EMData::get_attr(), EMAN::EMData::process(), EMAN::EMData::process_inplace(), EMAN::EMData::set_attr(), EMAN::Dict::set_default(), EMAN::Transform::set_mirror(), and t.

01002 {
01003         Dict rot_params("rfp_mode",params.set_default("rfp_mode",2));
01004         EMData *r1 = this_img->align("rotational", to, rot_params,cmp_name, cmp_params);
01005 
01006 
01007         EMData* flipped =to->process("xform.flip", Dict("axis", "x"));
01008         EMData *r2 = this_img->align("rotational", flipped,rot_params, cmp_name, cmp_params);
01009         Transform* t = r2->get_attr("xform.align2d");
01010         t->set_mirror(true);
01011         r2->set_attr("xform.align2d",t);
01012         delete t;
01013 
01014         float cmp1 = r1->cmp(cmp_name, to, cmp_params);
01015         float cmp2 = r2->cmp(cmp_name, flipped, cmp_params);
01016 
01017         delete flipped; flipped = 0;
01018 
01019         EMData *result = 0;
01020 
01021         if (cmp1 < cmp2) {
01022                 if( r2 )
01023                 {
01024                         delete r2;
01025                         r2 = 0;
01026                 }
01027                 result = r1;
01028         }
01029         else {
01030                 if( r1 )
01031                 {
01032                         delete r1;
01033                         r1 = 0;
01034                 }
01035                 result = r2;
01036                 result->process_inplace("xform.flip",Dict("axis","x"));
01037         }
01038 
01039         return result;
01040 }

virtual string EMAN::RotateFlipAligner::get_desc  )  const [inline, virtual]
 

Implements EMAN::Aligner.

Definition at line 730 of file aligner.h.

00731                 {
00732                         return "Performs two rotational alignments, one using the original image and one using the hand-flipped image. Decides which alignment is better using a comparitor and returns it";
00733                 }

virtual string EMAN::RotateFlipAligner::get_name  )  const [inline, virtual]
 

Get the Aligner's name.

Each Aligner is identified by a unique name.

Returns:
The Aligner's name.

Implements EMAN::Aligner.

Definition at line 725 of file aligner.h.

00726                 {
00727                         return NAME;
00728                 }

virtual TypeDict EMAN::RotateFlipAligner::get_param_types  )  const [inline, virtual]
 

Implements EMAN::Aligner.

Definition at line 740 of file aligner.h.

00741                 {
00742                         return static_get_param_types();
00743                 }

Aligner* EMAN::RotateFlipAligner::NEW  )  [inline, static]
 

Definition at line 735 of file aligner.h.

00736                 {
00737                         return new RotateFlipAligner();
00738                 }

TypeDict EMAN::RotateFlipAligner::static_get_param_types  )  [inline, static]
 

Definition at line 745 of file aligner.h.

References EMAN::TypeDict::put().

00745                                                          {
00746                         TypeDict d;
00747 
00748                         d.put("imask", EMObject::INT);
00749                         d.put("rfp_mode", EMObject::INT,"Either 0,1 or 2. A temporary flag for testing the rotational foot print");
00750                         return d;
00751                 }


Member Data Documentation

const string RotateFlipAligner::NAME = "rotate_flip" [static]
 

Definition at line 69 of file aligner.cpp.


The documentation for this class was generated from the following files:
Generated on Fri Aug 10 16:36:43 2012 for EMAN2 by  doxygen 1.3.9.1