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aligner.h File Reference

#include "emobject.h"

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Namespaces

namespace  EMAN

Classes

class  EMAN::Aligner
 Aligner class defines image alignment method. More...
class  EMAN::TranslationalAligner
 Translational 2D Alignment using cross correlation. More...
class  EMAN::RotationalAligner
 rotational alignment using angular correlation More...
class  EMAN::RotationalAlignerIterative
 rotational alignment using the iterative method (in this case we only do one iteration b/c we are not doing a translation. More...
class  EMAN::RotatePrecenterAligner
 rotational alignment assuming centers are correct More...
class  EMAN::RotateTranslateAligner
 rotational, translational alignment More...
class  EMAN::RotateTranslateAlignerIterative
 Iterative rotational, translational alignment. More...
class  EMAN::RotateTranslateAlignerPawel
 Rotational, translational alignment by resampling to polar coordinates. More...
class  EMAN::RotateTranslateBestAligner
 rotational, translational alignment More...
class  EMAN::RotateFlipAligner
 rotational and flip alignment More...
class  EMAN::RotateFlipAlignerIterative
 rotational and flip alignment, iterative style More...
class  EMAN::RotateTranslateFlipAligner
 rotational, translational and flip alignment More...
class  EMAN::RotateTranslateFlipAlignerIterative
 rotational, translational and flip alignment, iterative style More...
class  EMAN::RotateTranslateFlipAlignerPawel
 Rotational, translational alignment by resampling to polar coordinates. More...
class  EMAN::RTFExhaustiveAligner
 rotational, translational and flip alignment using real-space methods. More...
class  EMAN::RTFSlowExhaustiveAligner
 rotational, translational and flip alignment using exhaustive search. More...
class  EMAN::RefineAligner
 refine alignment. More...
class  EMAN::Refine3DAlignerGridInefficient
class  EMAN::Refine3DAlignerQuaternion
 Refine alignment. More...
class  EMAN::RT3DGridAligner
 rotational and translational alignment using a square qrid of Altitude and Azimuth values (the phi range is specifiable) This aligner is ported from the original tomohunter.py - it is less efficient than searching on the sphere (RT3DSphereAligner), but very useful if you want to search in a specific, small, local area. More...
class  EMAN::RT3DSphereAligner
 3D rotational and translational alignment using spherical sampling, can reduce the search space based on symmetry. More...
class  EMAN::FRM2DAligner
class  EMAN::CUDA_Aligner
class  EMAN::CUDA_multiref_aligner

Defines

#define eman__aligner_h__   1
 
Id
aligner.h,v 1.109 2011/03/07 17:01:20 john Exp


Functions

void dump_aligners ()
map< string, vector< string > > dump_aligners_list ()


Define Documentation

#define eman__aligner_h__   1
 

Id
aligner.h,v 1.109 2011/03/07 17:01:20 john Exp

Definition at line 37 of file aligner.h.


Function Documentation

void EMAN::dump_aligners  ) 
 

Definition at line 2956 of file aligner.cpp.

02957 {
02958         dump_factory < Aligner > ();
02959 }

map< string, vector< string > > EMAN::dump_aligners_list  ) 
 

Definition at line 2961 of file aligner.cpp.

02962 {
02963         return dump_factory_list < Aligner > ();
02964 }


Generated on Mon Mar 7 18:18:38 2011 for EMAN2 by  doxygen 1.3.9.1