#include <processor.h>
Inheritance diagram for EMAN::SetSFProcessor:
Public Member Functions | |
virtual string | get_name () const |
Get the processor's name. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
static Processor * | NEW () |
Static Public Attributes | |
static const string | NAME = "filter.setstrucfac" |
Protected Member Functions | |
void | create_radial_func (vector< float > &radial_mask, EMData *image) const |
strucfac | XYData object with the curve to be imposed as intensity as a function of s | |
apix | A/pix value. Overrides and replaces apix_x/y/z in image |
Definition at line 5573 of file processor.h.
void SetSFProcessor::create_radial_func | ( | vector< float > & | radial_mask, | |
EMData * | image | |||
) | const [protected, virtual] |
Implements EMAN::FourierAnlProcessor.
Definition at line 6113 of file processor.cpp.
References EMAN::EMData::get_attr(), EMAN::XYData::get_yatx(), EMAN::Dict::has_key(), EMAN::Processor::params, EMAN::EMData::set_attr(), and sqrt().
06113 { 06114 // The radial mask comes in with the existing radial image profile 06115 // The radial mask runs from 0 to the 1-D Nyquist (it leaves out the corners in Fourier space) 06116 06117 XYData *sf = params["strucfac"]; 06118 if(params.has_key("apix")) { 06119 image->set_attr("apix_x", (float)params["apix"]); 06120 image->set_attr("apix_y", (float)params["apix"]); 06121 image->set_attr("apix_z", (float)params["apix"]); 06122 } 06123 06124 float apix=image->get_attr("apix_x"); 06125 06126 int n = radial_mask.size(); 06127 for (int i=0; i<n; i++) { 06128 if (radial_mask[i]>0) radial_mask[i]= n*n*n*sqrt(sf->get_yatx(i/(apix*2.0f*n),false)/radial_mask[i]); 06129 else if (i>0) radial_mask[i]=radial_mask[i-1]; 06130 } 06131 06132 }
virtual string EMAN::SetSFProcessor::get_desc | ( | ) | const [inline, virtual] |
Get the descrition of this specific processor.
This function must be overwritten by a subclass.
Implements EMAN::Processor.
Definition at line 5582 of file processor.h.
05583 { 05584 return "Filters the image so its 1-D power spectrum matches a supplied X-Y curve"; 05585 }
virtual string EMAN::SetSFProcessor::get_name | ( | ) | const [inline, virtual] |
Get the processor's name.
Each processor is identified by a unique name.
Implements EMAN::Processor.
Definition at line 5577 of file processor.h.
References NAME.
05578 { 05579 return NAME; 05580 }
virtual TypeDict EMAN::SetSFProcessor::get_param_types | ( | ) | const [inline, virtual] |
Get processor parameter information in a dictionary.
Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::FourierAnlProcessor.
Definition at line 5592 of file processor.h.
References EMAN::EMObject::FLOAT, EMAN::TypeDict::put(), and EMAN::EMObject::XYDATA.
05593 { 05594 TypeDict d; 05595 d.put("strucfac", EMObject::XYDATA, "An XYData object contaning the curve to be imposed as a function of S"); 05596 d.put("apix", EMObject::FLOAT, " Override A/pix in the image header (changes x,y and z)"); 05597 return d; 05598 }
static Processor* EMAN::SetSFProcessor::NEW | ( | ) | [inline, static] |
const string SetSFProcessor::NAME = "filter.setstrucfac" [static] |