#include <processor.h>
Inheritance diagram for EMAN::RadialProcessor:
Public Member Functions | |
void | process_inplace (EMData *image) |
To process an image in-place. | |
string | get_name () const |
Get the processor's name. | |
TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
string | get_desc () const |
Get the descrition of this specific processor. | |
Static Public Member Functions | |
static Processor * | NEW () |
Static Public Attributes | |
static const string | NAME = "mask.radialprofile" |
table | a radial table for multiplication |
ImageFormatException | this filter only apply to real image |
Definition at line 6745 of file processor.h.
string EMAN::RadialProcessor::get_desc | ( | ) | const [inline, virtual] |
Get the descrition of this specific processor.
This function must be overwritten by a subclass.
Implements EMAN::Processor.
Definition at line 6767 of file processor.h.
06768 { 06769 return "Multiply a real-space image by a radial function. 1 value / pixel, extending to corner. Missing values -> 0."; 06770 }
string EMAN::RadialProcessor::get_name | ( | ) | const [inline, virtual] |
Get the processor's name.
Each processor is identified by a unique name.
Implements EMAN::Processor.
Definition at line 6750 of file processor.h.
References NAME.
Referenced by process_inplace().
06751 { 06752 return NAME; 06753 }
TypeDict EMAN::RadialProcessor::get_param_types | ( | ) | const [inline, virtual] |
Get processor parameter information in a dictionary.
Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor.
Definition at line 6760 of file processor.h.
References EMAN::EMObject::FLOATARRAY, and EMAN::TypeDict::put().
06761 { 06762 TypeDict d; 06763 d.put("table", EMObject::FLOATARRAY, "Radial array of floats, 1 float/pixel"); 06764 return d; 06765 }
static Processor* EMAN::RadialProcessor::NEW | ( | ) | [inline, static] |
void RadialProcessor::process_inplace | ( | EMData * | image | ) | [virtual] |
To process an image in-place.
For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
image | The image to be processed. |
Implements EMAN::Processor.
Definition at line 8066 of file processor.cpp.
References get_name(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), ImageFormatException, EMAN::EMData::is_complex(), LOGERR, LOGWARN, EMAN::Processor::params, EMAN::Dict::size(), sqrt(), and EMAN::EMData::update().
08067 { 08068 if (!image) { 08069 LOGWARN("NULL Image"); 08070 return; 08071 } 08072 08073 //Note : real image only! 08074 if(image->is_complex()) { 08075 LOGERR("%s Processor only operates on real images", get_name().c_str()); 08076 throw ImageFormatException("apply to real image only"); 08077 } 08078 08079 vector<float> table = params["table"]; 08080 vector<float>::size_type tsize = table.size(); 08081 08082 int nx = image->get_xsize(); 08083 int ny = image->get_ysize(); 08084 int nz = image->get_zsize(); 08085 08086 int nx2 = nx / 2; 08087 int ny2 = ny / 2; 08088 int nz2 = nz / 2; 08089 float sz[3]; 08090 sz[0] = static_cast<float>(nx2); 08091 sz[1] = static_cast<float>(ny2); 08092 sz[2] = static_cast<float>(nz2); 08093 float szmax = *std::max_element(&sz[0], &sz[3]); 08094 float maxsize; 08095 if(nz>1) { 08096 maxsize = (float)(1.8f * szmax); 08097 } 08098 else{ 08099 maxsize = (float)(1.5f * szmax); 08100 } 08101 for(int i=tsize+1; i<maxsize; i++) { 08102 table.push_back(0.0f); 08103 } 08104 08105 float dx = 1.0f / (float)nx; 08106 float dy = 1.0f / (float)ny; 08107 float dz = 1.0f / (float)nz; 08108 float dx2 = dx * dx; 08109 float dy2 = dy * dy; 08110 float dz2 = dz * dz; 08111 int iz, iy, ix, jz, jy, jx; 08112 float argx, argy, argz; 08113 float rf, df, f; 08114 int ir; 08115 for(iz=1; iz<=nz; iz++) { 08116 jz = iz - 1; 08117 if(jz > nz2) { 08118 jz -= nz; 08119 } 08120 argz = float(jz*jz) * dz2; 08121 08122 for(iy=1; iy<=ny; iy++) { 08123 jy = iy - 1; 08124 if(jy > ny2) { 08125 jy -= ny; 08126 } 08127 argy = argz + float(jy*jy) * dy2; 08128 08129 for(ix=1; ix<=nx; ix++) { 08130 jx = ix -1; 08131 argx = argy + float(jx*jx)*dx2; 08132 08133 rf = sqrt(argx)*2.0f*nx2; 08134 ir = int(rf); 08135 df = rf - float(ir); 08136 f = table[ir] + df*(table[ir+1]-table[ir]); 08137 08138 (*image)(ix-1,iy-1,iz-1) *= f; 08139 } 08140 } 08141 } 08142 08143 image->update(); 08144 }
const string RadialProcessor::NAME = "mask.radialprofile" [static] |