#include <aligner.h>
Inheritance diagram for EMAN::RotateFlipAligner:


Public Member Functions | |
| virtual EMData * | align (EMData *this_img, EMData *to_img, const string &cmp_name="dot", const Dict &cmp_params=Dict()) const |
| To align 'this_img' with another image passed in through its parameters. | |
| virtual EMData * | align (EMData *this_img, EMData *to_img) const |
| virtual string | get_name () const |
| Get the Aligner's name. | |
| virtual string | get_desc () const |
| virtual TypeDict | get_param_types () const |
Static Public Member Functions | |
| Aligner * | NEW () |
| TypeDict | static_get_param_types () |
Static Public Attributes | |
| const string | NAME = "rotate_flip" |
| imask | ||
| rfp_mode | Either 0,1 or 2. A temporary flag for testing the rotational foot print |
Definition at line 530 of file aligner.h.
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Implements EMAN::Aligner. Definition at line 535 of file aligner.h. References align(). 00536 {
00537 return align(this_img, to_img, "dot", Dict());
00538 }
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To align 'this_img' with another image passed in through its parameters. The alignment uses a user-given comparison method to compare the two images. If none is given, a default one is used.
Implements EMAN::Aligner. Definition at line 808 of file aligner.cpp. References EMAN::EMData::align(), EMAN::EMData::cmp(), EMAN::EMData::get_attr(), EMAN::EMData::process(), EMAN::EMData::process_inplace(), EMAN::EMData::set_attr(), EMAN::Dict::set_default(), EMAN::Transform::set_mirror(), and t. 00810 {
00811 Dict rot_params("rfp_mode",params.set_default("rfp_mode",0));
00812 EMData *r1 = this_img->align("rotational", to, rot_params,cmp_name, cmp_params);
00813
00814
00815 EMData* flipped =to->process("xform.flip", Dict("axis", "x"));
00816 EMData *r2 = this_img->align("rotational", flipped,rot_params, cmp_name, cmp_params);
00817 Transform* t = r2->get_attr("xform.align2d");
00818 t->set_mirror(true);
00819 r2->set_attr("xform.align2d",t);
00820 delete t;
00821
00822 float cmp1 = r1->cmp(cmp_name, to, cmp_params);
00823 float cmp2 = r2->cmp(cmp_name, flipped, cmp_params);
00824
00825 delete flipped; flipped = 0;
00826
00827 EMData *result = 0;
00828
00829 if (cmp1 < cmp2) {
00830 if( r2 )
00831 {
00832 delete r2;
00833 r2 = 0;
00834 }
00835 result = r1;
00836 }
00837 else {
00838 if( r1 )
00839 {
00840 delete r1;
00841 r1 = 0;
00842 }
00843 result = r2;
00844 result->process_inplace("xform.flip",Dict("axis","x"));
00845 }
00846
00847 return result;
00848 }
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Implements EMAN::Aligner. Definition at line 544 of file aligner.h. 00545 {
00546 return "Performs two rotational alignments, one using the original image and one using the hand-flipped image. Decides which alignment is better using a comparitor and returns it";
00547 }
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Get the Aligner's name. Each Aligner is identified by a unique name.
Implements EMAN::Aligner. Definition at line 539 of file aligner.h. 00540 {
00541 return NAME;
00542 }
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Implements EMAN::Aligner. Definition at line 554 of file aligner.h. 00555 {
00556 return static_get_param_types();
00557 }
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Definition at line 549 of file aligner.h. 00550 {
00551 return new RotateFlipAligner();
00552 }
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Definition at line 559 of file aligner.h. References EMAN::TypeDict::put(). 00559 {
00560 TypeDict d;
00561
00562 d.put("imask", EMObject::INT);
00563 d.put("rfp_mode", EMObject::INT,"Either 0,1 or 2. A temporary flag for testing the rotational foot print");
00564 return d;
00565 }
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Definition at line 66 of file aligner.cpp. |
1.3.9.1