#include <processor.h>
Inheritance diagram for EMAN::CoordinateProcessor:


Public Member Functions | |
| CoordinateProcessor () | |
| void | process_inplace (EMData *image) |
| To process an image in-place. | |
Static Public Member Functions | |
| string | get_group_desc () |
| Get the description of this group of processors. | |
Protected Member Functions | |
| virtual void | process_pixel (float *pixel, int xi, int yi, int zi) const =0 |
| virtual void | calc_locals (EMData *) |
| virtual bool | is_valid () const |
Protected Attributes | |
| int | nx |
| int | ny |
| int | nz |
| float | mean |
| float | sigma |
| float | maxval |
| bool | is_complex |
This is the base class. Specific coordinate processor should implement process_pixel().
Definition at line 2261 of file processor.h.
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Definition at line 2264 of file processor.h. References is_complex(), nx, and ny.
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Reimplemented in EMAN::CircularMaskProcessor, EMAN::MaskEdgeMeanProcessor, and EMAN::MaskGaussInvProcessor. Definition at line 2276 of file processor.h. Referenced by process_inplace(). 02277 {
02278 }
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Get the description of this group of processors. This function is defined in a parent class. It gives a introduction to a group of processors.
Reimplemented from EMAN::Processor. Definition at line 2269 of file processor.h. 02270 {
02271 return "CoordinateProcessor applies processing based on a pixel's value and it coordinates. This is the base class. Specific coordinate processor should implement process_pixel().";
02272 }
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Reimplemented in EMAN::CircularMaskProcessor. Definition at line 2279 of file processor.h. Referenced by process_inplace(). 02280 {
02281 return true;
02282 }
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To process an image in-place. For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
Implements EMAN::Processor. Definition at line 1310 of file processor.cpp. References calc_locals(), data, EMAN::EMData::get_attr(), EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), EMAN::EMData::is_complex(), is_complex, is_valid(), LOGWARN, maxval, mean, nx, ny, nz, process_pixel(), sigma, EMAN::EMData::update(), x, and y. 01311 {
01312 if (!image) {
01313 LOGWARN("NULL Image");
01314 return;
01315 }
01316
01317 maxval = image->get_attr("maximum");
01318 mean = image->get_attr("mean");
01319 sigma = image->get_attr("sigma");
01320 nx = image->get_xsize();
01321 ny = image->get_ysize();
01322 nz = image->get_zsize();
01323 is_complex = image->is_complex();
01324
01325 calc_locals(image);
01326
01327
01328 if (!is_valid()) {
01329 return;
01330 }
01331
01332 float *data = image->get_data();
01333 size_t i = 0;
01334
01335 for (int z = 0; z < nz; z++) {
01336 for (int y = 0; y < ny; y++) {
01337 for (int x = 0; x < nx; x++) {
01338 process_pixel(&data[i], x, y, z);
01339 ++i;
01340 }
01341 }
01342 }
01343 image->update();
01344 }
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Implemented in EMAN::CircularMaskProcessor, and EMAN::MaskGaussNonuniformProcessor. Referenced by process_inplace(). |
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Definition at line 2291 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2289 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2287 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2284 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2285 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2286 of file processor.h. Referenced by process_inplace(). |
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Definition at line 2288 of file processor.h. Referenced by process_inplace(). |
1.3.9.1