#include <averager.h>
Inheritance diagram for EMAN::MinMaxAverager:
Public Member Functions | |
MinMaxAverager () | |
void | add_image (EMData *image) |
To add an image to the Averager. | |
EMData * | finish () |
Finish up the averaging and return the result. | |
string | get_name () const |
Get the Averager's name. | |
string | get_desc () const |
TypeDict | get_param_types () const |
Get Averager parameter information in a dictionary. | |
virtual void | mult (const float &) |
Multiply the result image by some floating point constant This is useful when weighting the input images prior to calling add_image - a situation where it is likely you want to divide by the sum of the weights. | |
Static Public Member Functions | |
Averager * | NEW () |
Static Public Attributes | |
const string | NAME = "minmax" |
Private Attributes | |
int | max |
int | nimg |
It optionally makes a sigma image.
max | If set, will find the max value, otherwise finds min |
Definition at line 261 of file averager.h.
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Definition at line 414 of file averager.cpp. References max. 00415 : nimg(0) 00416 { 00417 /*move max out of initializer list, since this max(0) is considered as a macro 00418 * in Visual Studio, which we defined somewhere else*/ 00419 max = 0; 00420 }
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To add an image to the Averager. This image will be averaged in this function.
Implements EMAN::Averager. Definition at line 422 of file averager.cpp. References EMAN::EMData::copy(), get_name(), EMAN::EMData::get_value_at(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), EMAN::EMUtil::is_same_size(), LOGERR, max, nimg, nx, ny, EMAN::EMData::set_value_at(), x, and y. 00423 { 00424 if (!image) { 00425 return; 00426 } 00427 00428 if (nimg >= 1 && !EMUtil::is_same_size(image, result)) { 00429 LOGERR("%sAverager can only process same-size Image", 00430 get_name().c_str()); 00431 return; 00432 } 00433 00434 nimg++; 00435 00436 int nx = image->get_xsize(); 00437 int ny = image->get_ysize(); 00438 int nz = image->get_zsize(); 00439 00440 if (nimg == 1) { 00441 result = image->copy(); 00442 max = params["max"]; 00443 return; 00444 } 00445 00446 for (int z=0; z<nz; z++) { 00447 for (int y=0; y<ny; y++) { 00448 for (int x=0; x<nx; x++) { 00449 if (result->get_value_at(x,y,z)>image->get_value_at(x,y,z)) 00450 { if (!max) result->set_value_at(x,y,z,image->get_value_at(x,y,z)); } 00451 else { if (max) result->set_value_at(x,y,z,image->get_value_at(x,y,z)); } 00452 } 00453 } 00454 } 00455 00456 }
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Finish up the averaging and return the result.
Implements EMAN::Averager. Definition at line 458 of file averager.cpp. References nimg, EMAN::EMData::set_attr(), and EMAN::EMData::update(). 00459 { 00460 result->update(); 00461 result->set_attr("ptcl_repr",nimg); 00462 00463 if (result && nimg > 1) return result; 00464 00465 return NULL; 00466 }
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Implements EMAN::Averager. Definition at line 274 of file averager.h. 00275 { 00276 return "Finds the minimum or maximum value in each pixel"; 00277 }
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Get the Averager's name. Each Averager is identified by a unique name.
Implements EMAN::Averager. Definition at line 269 of file averager.h. Referenced by add_image(). 00270 {
00271 return NAME;
00272 }
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Get Averager parameter information in a dictionary. Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Averager. Definition at line 284 of file averager.h. References EMAN::TypeDict::put(). 00285 { 00286 TypeDict d; 00287 d.put("max", EMObject::INT, "If set, will find the max value, otherwise finds min"); 00288 return d; 00289 }
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Multiply the result image by some floating point constant This is useful when weighting the input images prior to calling add_image - a situation where it is likely you want to divide by the sum of the weights. Hence call mult after all of the weighted images have been added.
Reimplemented from EMAN::Averager. Definition at line 291 of file averager.h. 00291 { }
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Definition at line 279 of file averager.h. 00280 { 00281 return new MinMaxAverager(); 00282 }
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Definition at line 296 of file averager.h. Referenced by add_image(), and MinMaxAverager(). |
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Definition at line 47 of file averager.cpp. |
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Definition at line 297 of file averager.h. Referenced by add_image(), and finish(). |