#include <aligner.h>
Inheritance diagram for EMAN::RotateFlipAligner:
Public Member Functions | |
virtual EMData * | align (EMData *this_img, EMData *to_img, const string &cmp_name="dot", const Dict &cmp_params=Dict()) const |
To align 'this_img' with another image passed in through its parameters. | |
virtual EMData * | align (EMData *this_img, EMData *to_img) const |
virtual string | get_name () const |
Get the Aligner's name. | |
virtual string | get_desc () const |
virtual TypeDict | get_param_types () const |
Static Public Member Functions | |
Aligner * | NEW () |
TypeDict | static_get_param_types () |
Static Public Attributes | |
const string | NAME = "rotate_flip" |
imask | ||
rfp_mode | Either 0,1 or 2. A temporary flag for testing the rotational foot print |
Definition at line 716 of file aligner.h.
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Implements EMAN::Aligner. Definition at line 721 of file aligner.h. References align(). 00722 { 00723 return align(this_img, to_img, "dot", Dict()); 00724 }
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To align 'this_img' with another image passed in through its parameters. The alignment uses a user-given comparison method to compare the two images. If none is given, a default one is used.
Implements EMAN::Aligner. Definition at line 1000 of file aligner.cpp. References EMAN::EMData::align(), EMAN::EMData::cmp(), EMAN::EMData::get_attr(), EMAN::EMData::process(), EMAN::EMData::process_inplace(), EMAN::EMData::set_attr(), EMAN::Dict::set_default(), EMAN::Transform::set_mirror(), and t. 01002 { 01003 Dict rot_params("rfp_mode",params.set_default("rfp_mode",2)); 01004 EMData *r1 = this_img->align("rotational", to, rot_params,cmp_name, cmp_params); 01005 01006 01007 EMData* flipped =to->process("xform.flip", Dict("axis", "x")); 01008 EMData *r2 = this_img->align("rotational", flipped,rot_params, cmp_name, cmp_params); 01009 Transform* t = r2->get_attr("xform.align2d"); 01010 t->set_mirror(true); 01011 r2->set_attr("xform.align2d",t); 01012 delete t; 01013 01014 float cmp1 = r1->cmp(cmp_name, to, cmp_params); 01015 float cmp2 = r2->cmp(cmp_name, flipped, cmp_params); 01016 01017 delete flipped; flipped = 0; 01018 01019 EMData *result = 0; 01020 01021 if (cmp1 < cmp2) { 01022 if( r2 ) 01023 { 01024 delete r2; 01025 r2 = 0; 01026 } 01027 result = r1; 01028 } 01029 else { 01030 if( r1 ) 01031 { 01032 delete r1; 01033 r1 = 0; 01034 } 01035 result = r2; 01036 result->process_inplace("xform.flip",Dict("axis","x")); 01037 } 01038 01039 return result; 01040 }
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Implements EMAN::Aligner. Definition at line 730 of file aligner.h. 00731 { 00732 return "Performs two rotational alignments, one using the original image and one using the hand-flipped image. Decides which alignment is better using a comparitor and returns it"; 00733 }
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Get the Aligner's name. Each Aligner is identified by a unique name.
Implements EMAN::Aligner. Definition at line 725 of file aligner.h. 00726 {
00727 return NAME;
00728 }
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Implements EMAN::Aligner. Definition at line 740 of file aligner.h. 00741 { 00742 return static_get_param_types(); 00743 }
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Definition at line 735 of file aligner.h. 00736 { 00737 return new RotateFlipAligner(); 00738 }
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Definition at line 745 of file aligner.h. References EMAN::TypeDict::put(). 00745 { 00746 TypeDict d; 00747 00748 d.put("imask", EMObject::INT); 00749 d.put("rfp_mode", EMObject::INT,"Either 0,1 or 2. A temporary flag for testing the rotational foot print"); 00750 return d; 00751 }
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Definition at line 69 of file aligner.cpp. |