EMAN2 Averager Manual


Last modified on Fri, 10 Aug 2012 16:30:23 CDT
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Averager Name Parameters Description
absmaxmin int min: If set, will average to minimum absolute value, by default average to max
Average to maximum(or minimum if set parameter 'min' to non-zero) absolute value in each pixel
ctf.auto Averaging with automatic CTF correction and SNR weight. No B-factor correction (as this is best done in 3-D). Does not require a structure factor, but only works with EMAN2's CTF model
ctfw.auto Averaging with autmatic CTF correction. Does not require a structure factor, but only works with EMAN2's CTF model
iteration Unknown
mean int ignore0: if set, ignore zero value pixels
emdata sigma: sigma value
Simple mean average of images
mean.tomo int save_norm: If set, will save the normalization volume as norm.hdf. Mainly for debugging purposes.
float thresh_sigma: multiplied by the standard deviation of the image, below-which values are considered zero. Default = .01
Average of volumes in Fourier space, excluding any pixels with near 0 intensity.
minmax int max: If set, will find the max value, otherwise finds min
Finds the minimum or maximum value in each pixel