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EMAN::AddMaskShellProcessor Class Reference

Add additional shells/rings to an existing 1/0 mask image. More...

#include <processor.h>

Inheritance diagram for EMAN::AddMaskShellProcessor:

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Collaboration diagram for EMAN::AddMaskShellProcessor:

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List of all members.

Public Member Functions

virtual void process_inplace (EMData *image)
 To process an image in-place.
virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "mask.addshells"

Detailed Description

Add additional shells/rings to an existing 1/0 mask image.

Parameters:
nshells number of shells to add

Definition at line 5100 of file processor.h.


Member Function Documentation

virtual string EMAN::AddMaskShellProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5110 of file processor.h.

05111                 {
05112                         return "Add additional shells/rings to an existing 1/0 mask image";
05113                 }

virtual string EMAN::AddMaskShellProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5105 of file processor.h.

05106                 {
05107                         return NAME;
05108                 }

virtual TypeDict EMAN::AddMaskShellProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::Processor.

Definition at line 5120 of file processor.h.

References EMAN::TypeDict::put().

05121                 {
05122                         TypeDict d;
05123                         d.put("nshells", EMObject::INT, "number of shells to add");
05124                         return d;
05125                 }

Processor* EMAN::AddMaskShellProcessor::NEW  )  [inline, static]
 

Definition at line 5115 of file processor.h.

05116                 {
05117                         return new AddMaskShellProcessor();
05118                 }

void AddMaskShellProcessor::process_inplace EMData image  )  [virtual]
 

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 5663 of file processor.cpp.

References EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGERR, LOGWARN, nx, ny, EMAN::EMData::update(), x, and y.

05664 {
05665         if (!image) {
05666                 LOGWARN("NULL Image");
05667                 return;
05668         }
05669 
05670         int nx = image->get_xsize();
05671         int ny = image->get_ysize();
05672         int nz = image->get_zsize();
05673 
05674         if (ny == 1) {
05675                 LOGERR("Tried to add mask shell to 1d image");
05676                 return;
05677         }
05678 
05679         int num_shells = params["nshells"];
05680 
05681         float *d = image->get_data();
05682         float k = 0.99999f;
05683         int nxy = nx * ny;
05684 
05685         if (nz == 1) {
05686                 for (int i = 0; i < num_shells; i++) {
05687                         for (int y = 1; y < ny - 1; y++) {
05688                                 int cur_y = y * nx;
05689 
05690                                 for (int x = 1; x < nx - 1; x++) {
05691                                         int j = x + cur_y;
05692                                         if (!d[j] && (d[j - 1] > k || d[j + 1] > k || d[j + nx] > k || d[j - nx] > k)) {
05693                                                 d[j] = k;
05694                                         }
05695                                 }
05696                         }
05697                         k -= 0.00001f;
05698                 }
05699         }
05700         else {
05701                 for (int i = 0; i < num_shells; i++) {
05702                         for (int z = 1; z < nz - 1; z++) {
05703                                 size_t cur_z = (size_t)z * nx * ny;
05704 
05705                                 for (int y = 1; y < ny - 1; y++) {
05706                                         size_t cur_y = y * nx + cur_z;
05707 
05708                                         for (int x = 1; x < nx - 1; x++) {
05709                                                 size_t j = x + cur_y;
05710 
05711                                                 if (!d[j] && (d[j - 1] > k || d[j + 1] > k || d[j + nx] > k ||
05712                                                                           d[j - nx] > k || d[j - nxy] > k || d[j + nxy] > k)) {
05713                                                         d[j] = k;
05714                                                 }
05715                                         }
05716                                 }
05717                         }
05718 
05719                         k -= 0.00001f;
05720                 }
05721         }
05722 
05723         size_t size = (size_t)nx * ny * nz;
05724         for (size_t i = 0; i < size; ++i) {
05725                 if (d[i]) {
05726                         d[i] = 1;
05727                 }
05728                 else {
05729                         d[i] = 0;
05730                 }
05731         }
05732 
05733         image->update();
05734 }


Member Data Documentation

const string AddMaskShellProcessor::NAME = "mask.addshells" [static]
 

Definition at line 170 of file processor.cpp.


The documentation for this class was generated from the following files:
Generated on Tue Jun 11 13:42:39 2013 for EMAN2 by  doxygen 1.3.9.1