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emdata_modular.h

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00001 
00005 /*
00006  * Author: Steven Ludtke, 04/10/2003 (sludtke@bcm.edu)
00007  * Copyright (c) 2000-2006 Baylor College of Medicine
00008  *
00009  * This software is issued under a joint BSD/GNU license. You may use the
00010  * source code in this file under either license. However, note that the
00011  * complete EMAN2 and SPARX software packages have some GPL dependencies,
00012  * so you are responsible for compliance with the licenses of these packages
00013  * if you opt to use BSD licensing. The warranty disclaimer below holds
00014  * in either instance.
00015  *
00016  * This complete copyright notice must be included in any revised version of the
00017  * source code. Additional authorship citations may be added, but existing
00018  * author citations must be preserved.
00019  *
00020  * This program is free software; you can redistribute it and/or modify
00021  * it under the terms of the GNU General Public License as published by
00022  * the Free Software Foundation; either version 2 of the License, or
00023  * (at your option) any later version.
00024  *
00025  * This program is distributed in the hope that it will be useful,
00026  * but WITHOUT ANY WARRANTY; without even the implied warranty of
00027  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
00028  * GNU General Public License for more details.
00029  *
00030  * You should have received a copy of the GNU General Public License
00031  * along with this program; if not, write to the Free Software
00032  * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00033  *
00034  * */
00035 
00040 #ifndef emdata__modular_h__
00041 #define emdata__modular_h__
00042 
00043 public:
00049 void process_inplace(const string & processorname, const Dict & params = Dict());
00050 
00055 void process_inplace(Processor * p);
00056 
00064 EMData * process(const string & processorname, const Dict & params = Dict()) const;
00065 
00070 EMData * process(Processor * p) const;
00071 
00079 float cmp(const string & cmpname, EMData * with, const Dict & params = Dict());
00080 
00091 EMData *align(const string & aligner_name, EMData * to_img,
00092                           const Dict & params = Dict(), const string & cmp_name = "",
00093                           const Dict& cmp_params = Dict());
00094 
00106 vector<Dict> xform_align_nbest(const string & aligner_name, EMData * to_img,
00107                           const Dict & params = Dict(), const unsigned int nsoln = 1, const string & cmp_name = "dot",
00108                                                                                  const Dict& cmp_params = Dict());
00109 
00116 EMData *project(const string & projector_name, const Dict & params = Dict());
00117 
00124 EMData *project(const string & projector_name, const Transform & t3d);
00125 
00133 EMData *backproject(const string & projector_name, const Dict & params = Dict());
00134 
00135 //#ifdef EMAN2_USING_CUDA
00136 //vector<EMData*> cuda_project(const vector<Transform> transforms);
00137 //#endif // EMAN2_USING_CUDA
00138 
00139 #endif  //emdata__modular_h__

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