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Contents
Contents
Index
EMAN 2 Reference Manual
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Contents
List of Tables
Introduction
Abstract
Goals
Installation
Required Libraries / Programs
FFTW
GSL - GNU Scientific Library
Boost
CMake
Optional Libraries / Programs
Quick Installation
Advanced Installation
Platform Dependent Optimization
Generating the Latest Documentation
Notes for Developers
Developer's Guide
Complete Reference Guide
Development Policy FAQ
Coding Style
Using Factory Classes
Exceptions
Using Exceptions
Existing Exception Types
Defining New Exception Classes
Using the Log Class
Typical Usage
Adding Components
Processors
Using Templates:
Adding Directly to the Core:
Aligners
Averagers
Image Comparator
IO Functionality
Reconstructors
Adding Documentation
Document Standards
Removing Preambles
Editing TOC.tex
Adding L
A
T
E
X Packages
Image Header Attribute Naming Conventions
Testing Framework
Testing Guidelines
Test Example
CVS Help
Miscellaneous
Reading/Writing Images in Python
Processors Usage
Reconstructors Usage
Using Aligner, Comparators, and Projectors
Using Pyste
Using FFTW
Large File I/O
Euler Angles
Using numpy
Using Transformations
Printing Error/Warning/Debugging Information
Adding Testing Groups
How to Install Boost Python
How to use your own version of python
How to Install numpy
Writing Python Scripts
Logging
Command-Line Argument Parsing
Code Modularity
Program Manuals
e2align3d.py
Usage
Description
Options
e2aligntest.py
Usage
Description
Options
e2boxer.py
Usage
Description
Options
e2cmmtomrc.py
Usage
Description
Options
logfile
Usage
Description
Options
e2foldfitter.py
Usage
Description
Options
e2make3d.py
Usage
Description
Options
e2pdb2mrc.py
Usage
Description
Options
e2proc2d.py
Usage
Description
Options
e2proc3d.py
Usage
Description
Options
e2project3d.py
Usage
Description
Options
e2scannereval.py
Usage
Description
Options
e2symbest.py
Usage
Description
Options
e2tomogram.py
Usage
Description
Options
Index
About this document ...
2013-06-11