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EMAN::SetSFProcessor Class Reference

Sets the structure factor based on a 1D s/intensity curve as an XYData object. More...

#include <processor.h>

Inheritance diagram for EMAN::SetSFProcessor:

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Collaboration diagram for EMAN::SetSFProcessor:

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List of all members.

Public Member Functions

virtual string get_name () const
 Get the processor's name.
virtual string get_desc () const
 Get the descrition of this specific processor.
virtual TypeDict get_param_types () const
 Get processor parameter information in a dictionary.

Static Public Member Functions

ProcessorNEW ()

Static Public Attributes

const string NAME = "filter.setstrucfac"

Protected Member Functions

void create_radial_func (vector< float > &radial_mask, EMData *image) const

Detailed Description

Sets the structure factor based on a 1D s/intensity curve as an XYData object.

Parameters:
strucfac XYData object with the curve to be imposed as intensity as a function of s
apix A/pix value. Overrides and replaces apix_x/y/z in image

Definition at line 5784 of file processor.h.


Member Function Documentation

void SetSFProcessor::create_radial_func vector< float > &  radial_mask,
EMData image
const [protected, virtual]
 

Implements EMAN::FourierAnlProcessor.

Definition at line 6370 of file processor.cpp.

References EMAN::EMData::get_attr(), EMAN::XYData::get_yatx(), EMAN::Dict::has_key(), EMAN::EMData::set_attr(), and sqrt().

06370                                                                                         {
06371         // The radial mask comes in with the existing radial image profile
06372         // The radial mask runs from 0 to the 1-D Nyquist (it leaves out the corners in Fourier space)
06373 
06374         XYData *sf = params["strucfac"];
06375         if(params.has_key("apix")) {
06376                 image->set_attr("apix_x", (float)params["apix"]);
06377                 image->set_attr("apix_y", (float)params["apix"]);
06378                 image->set_attr("apix_z", (float)params["apix"]);
06379         }
06380 
06381         float apix=image->get_attr("apix_x");
06382         
06383         int n = radial_mask.size();
06384         for (int i=0; i<n; i++) {
06385 //              if (radial_mask[i]>0)
06386 //              {
06387 //                      radial_mask[i]= sqrt(n*sf->get_yatx(i/(apix*2.0f*n),false)/radial_mask[i]);
06388 //              }
06389                 if (radial_mask[i]>0) {
06390                         radial_mask[i]= sqrt((n*n*n)*sf->get_yatx(i/(apix*2.0f*n))/radial_mask[i]);
06391                 }
06392                 else if (i>0) radial_mask[i]=radial_mask[i-1];
06393         }
06394 
06395 }

virtual string EMAN::SetSFProcessor::get_desc  )  const [inline, virtual]
 

Get the descrition of this specific processor.

This function must be overwritten by a subclass.

Returns:
The description of this processor.

Implements EMAN::Processor.

Definition at line 5793 of file processor.h.

05794                 {
05795                         return "Filters the image so its 1-D power spectrum matches a supplied X-Y curve";
05796                 }

virtual string EMAN::SetSFProcessor::get_name  )  const [inline, virtual]
 

Get the processor's name.

Each processor is identified by a unique name.

Returns:
The processor's name.

Implements EMAN::Processor.

Definition at line 5788 of file processor.h.

05789                 {
05790                         return NAME;
05791                 }

virtual TypeDict EMAN::SetSFProcessor::get_param_types  )  const [inline, virtual]
 

Get processor parameter information in a dictionary.

Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.

Returns:
A dictionary containing the parameter info.

Reimplemented from EMAN::FourierAnlProcessor.

Definition at line 5803 of file processor.h.

References EMAN::TypeDict::put().

05804                 {
05805                         TypeDict d;
05806                         d.put("strucfac", EMObject::XYDATA, "An XYData object contaning the curve to be imposed as a function of S");
05807                         d.put("apix", EMObject::FLOAT, " Override A/pix in the image header (changes x,y and z)");
05808                         return d;
05809                 }

Processor* EMAN::SetSFProcessor::NEW  )  [inline, static]
 

Definition at line 5798 of file processor.h.

05799                 {
05800                         return new SetSFProcessor();
05801                 }


Member Data Documentation

const string SetSFProcessor::NAME = "filter.setstrucfac" [static]
 

Definition at line 188 of file processor.cpp.


The documentation for this class was generated from the following files:
Generated on Tue Jun 11 13:42:42 2013 for EMAN2 by  doxygen 1.3.9.1