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Options

Table 4.11: e2project3d.py Options
Argument Description
   
-version show program's version number and exit
-h, -help show this help message and exit
-out=OUTFILE Output file. Default is 'e2proj.img'
-projector=PROJECTOR Projector to use
-prop=PROP Generates projections with a relatively uniform projection density in the unit triangle.
-prop_start=PROP_START Start projections at the specified alt (in degrees). Default=0.0
-prop_end=PROP_END Create projections up to the specified alt (in degrees). Default=90.0
-euler=$<$az$>$ $<$alt$>$ $<$phi$>$ Generate a single projection with the given orientation
-sym=SYM Set the symmetry; choices are: c$<$n$>$, d$<$n$>$, h$<$n$>$, i, t, icos, or oct
-mode=MODE Default is real-space projection, this specifies various Fourier modes
-angletype=ANGLETYPE Angle convention to use: [EMAN, SPIDER]. EMAN is the default
-dump_angles Dumps Euler angles to a text file
-mask=MASK Specify a circular mask radius for the projections
-randomphi Randomize phi
-phicomp Roughly compensate for in-plane rotation from az with phi
-phitoo=PHITOO This will also vary phi in the final file. Warning: This works only with '-prop=' and generates a LOT of projections.
-smear Used in conjunction with '-phitoo=', this will rotationally smear between phi steps.
-grid=GRID Generate projections on an rectangular alt/az mesh, nonuniform projection density
-angle_input_file=FILE_NAME Us an input file to specify what angles to project
-pad=PAD Pad image
   


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Next: e2scannereval.py Up: e2project3d.py Previous: Description   Contents   Index
2013-06-11