#include <ctime>
#include <memory>
#include "emdata.h"
#include "analyzer.h"
#include "sparx/analyzer_sparx.h"
#include "util.h"
#include "cmp.h"
#include "sparx/lapackblas.h"
#include "sparx/varimax.h"
Include dependency graph for analyzer.cpp:
Go to the source code of this file.
Namespaces | |
namespace | EMAN |
Defines | |
#define | covmat(i, j) covmat[ ((j)-1)*nx + (i)-1 ] |
#define | imgdata(i) imgdata[ (i)-1 ] |
#define | eigvec(i, j) eigvec[(j)*ncov + (i)] |
#define | qmat(i, j) qmat[((j)-1)*kstep + (i) -1] |
#define | diag(i) diag[(i)-1] |
#define | rdata(i) rdata[(i)-1] |
#define | eigvec(i, j) eigvec[((j)-1)*ncov + (i)-1] |
#define | eigval(i) eigval[(i)-1] |
#define | TOL 1e-7 |
#define | V(i, j) V[((j)-1)*imgsize + (i) - 1] |
#define | v0(i) v0[(i)-1] |
#define | Av(i) Av[(i)-1] |
#define | subdiag(i) subdiag[(i)-1] |
#define | diag(i) diag[(i)-1] |
#define | hvec(i) hvec[(i)-1] |
#define | eigvec(i, j) eigvec[(j)*ncov + (i)] |
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Definition at line 493 of file analyzer.cpp. Referenced by EMAN::PCA::Lanczos(), EMAN::PCAlarge::Lanczos(), and EMAN::PCA::Lanczos_ooc(). |
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Definition at line 246 of file analyzer.cpp. Referenced by EMAN::Util::coveig(), and EMAN::Util::coveig_for_py(). |
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Definition at line 495 of file analyzer.cpp. |
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Definition at line 495 of file analyzer.cpp. Referenced by EMAN::PCAlarge::analyze(), EMAN::PCA::dopca_lan(), EMAN::PCA::dopca_ooc(), EMAN::PCA::Lanczos(), EMAN::PCAlarge::Lanczos(), EMAN::PCA::Lanczos_ooc(), strmm_(), and strmv_(). |
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Definition at line 388 of file analyzer.cpp. Referenced by EMAN::Util::coveig(), and EMAN::Util::coveig_for_py(). |
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Definition at line 752 of file analyzer.cpp. |
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Definition at line 752 of file analyzer.cpp. |
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Definition at line 752 of file analyzer.cpp. Referenced by EMAN::PCAlarge::analyze(), EMAN::PCAsmall::analyze(), EMAN::Util::coveig(), EMAN::Util::coveig_for_py(), EMAN::PCA::dopca_lan(), and EMAN::PCA::dopca_ooc(). |
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Definition at line 496 of file analyzer.cpp. Referenced by EMAN::PCA::Lanczos(), and EMAN::PCAlarge::Lanczos(). |
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Definition at line 247 of file analyzer.cpp. Referenced by EMAN::varimax::analyze(), CleanStack(), CleanStack_Cart(), EMAN::PCAlarge::insert_image(), EMAN::PCAsmall::insert_image(), EMAN::PCA::Lanczos(), EMAN::PCAlarge::Lanczos(), EMAN::PCA::Lanczos_ooc(), ReadStackandDist(), ReadStackandDist_Cart(), and unified(). |
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Definition at line 384 of file analyzer.cpp. Referenced by EMAN::PCAlarge::analyze(), EMAN::PCA::dopca_lan(), and EMAN::PCA::dopca_ooc(). |
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Definition at line 494 of file analyzer.cpp. Referenced by EMAN::PCAlarge::analyze(), EMAN::PCA::dopca_lan(), EMAN::PCA::dopca_ooc(), EMAN::PCA::Lanczos(), EMAN::PCAlarge::Lanczos(), and EMAN::PCA::Lanczos_ooc(). |
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Definition at line 490 of file analyzer.cpp. |
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Definition at line 492 of file analyzer.cpp. Referenced by EMAN::Transform::invert(), EMAN::PCA::Lanczos(), EMAN::PCAlarge::Lanczos(), and EMAN::DiffBlockProcessor::process_inplace(). |