#include <processor.h>
Inheritance diagram for EMAN::TestImageSinewaveCircular:
Public Member Functions | |
virtual void | process_inplace (EMData *image) |
To process an image in-place. | |
virtual string | get_name () const |
Get the processor's name. | |
virtual string | get_desc () const |
Get the descrition of this specific processor. | |
virtual TypeDict | get_param_types () const |
Get processor parameter information in a dictionary. | |
Static Public Member Functions | |
Processor * | NEW () |
Static Public Attributes | |
const string | NAME = "testimage.sinewave.circular" |
wavelength | float this value is the d in function |sin(x/d)| | |
axis | char (optional) specify a major axis for asymmetric features | |
c | distance (optional) float between focus and the center of an ellipse | |
phase | degree (optional) phase for sine wave, default is 0 |
Definition at line 6363 of file processor.h.
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Get the descrition of this specific processor. This function must be overwritten by a subclass.
Implements EMAN::Processor. Definition at line 6373 of file processor.h. 06374 { 06375 return "Replace a source image as a circular sine wave in specified wave length"; 06376 }
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Get the processor's name. Each processor is identified by a unique name.
Implements EMAN::Processor. Definition at line 6368 of file processor.h. 06369 {
06370 return NAME;
06371 }
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Get processor parameter information in a dictionary. Each parameter has one record in the dictionary. Each record contains its name, data-type, and description.
Reimplemented from EMAN::Processor. Definition at line 6383 of file processor.h. References EMAN::TypeDict::put(). 06384 { 06385 TypeDict d; 06386 d.put("wavelength", EMObject::FLOAT, "(required)this value is the d in function |sin(x/d)|, unit: pixel"); 06387 d.put("axis", EMObject::STRING, "specify a major axis for asymmetric features"); 06388 d.put("c", EMObject::FLOAT, "distance between focus and the center of an ellipse"); 06389 d.put("phase", EMObject::FLOAT, "(optional)phase for sine wave, default is 0"); 06390 return d; 06391 }
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Definition at line 6378 of file processor.h. 06379 { 06380 return new TestImageSinewaveCircular(); 06381 }
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To process an image in-place. For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.
Implements EMAN::Processor. Definition at line 7653 of file processor.cpp. References EMAN::EMData::get_data(), InvalidValueException, nx, ny, phase(), EMAN::TestImageProcessor::preprocess(), sqrt(), and EMAN::EMData::update(). 07654 { 07655 preprocess(image); 07656 07657 float wavelength = params["wavelength"]; 07658 string axis = (const char*)params["axis"]; 07659 float c = params["c"]; 07660 float phase = params["phase"]; 07661 07662 float *dat = image->get_data(); 07663 float r; //this is the distance of pixel from the image center(nx/2, ny/2, nz/2) 07664 float x2, y2, z2; //this is the coordinates of this pixel from image center 07665 for (int k = 0; k < nz; ++k) { 07666 for (int j = 0; j < ny; ++j) { 07667 for (int i = 0; i < nx; ++i, ++dat) { 07668 x2 = (float)( i - nx/2 ); 07669 y2 = (float)( j - ny/2 ); 07670 z2 = (float)( k - nz/2 ); 07671 if(axis == ""){ 07672 r = (float)sqrt(x2*x2+y2*y2+z2*z2); 07673 } 07674 else if(axis == "x"){ 07675 float lc = -c; 07676 float rc = c; 07677 r = ( (float)sqrt((x2-lc)*(x2-lc)+y2*y2+z2*z2) + 07678 (float)sqrt((x2-rc)*(x2-rc)+y2*y2+z2*z2) ) /2.0f - c; 07679 } 07680 else if(axis == "y"){ 07681 float lc = -c; 07682 float rc = c; 07683 r = ( (float)sqrt(x2*x2+(y2-lc)*(y2-lc)+z2*z2) + 07684 (float)sqrt(x2*x2+(y2-rc)*(y2-rc)+z2*z2) ) /2.0f - c; 07685 } 07686 else if(axis == "z"){ 07687 if( nz == 1 ){ 07688 throw InvalidValueException(0, "This is a 2D image, no asymmetric feature for z axis"); 07689 } 07690 float lc = -c; 07691 float rc = c; 07692 r = ( (float)sqrt(x2*x2+y2*y2+(z2-lc)*(z2-lc)) + 07693 (float)sqrt(x2*x2+y2*y2+(z2-rc)*(z2-rc)) ) /2.0f - c; 07694 } 07695 else{ 07696 throw InvalidValueException(0, "please specify a valid axis for asymmetric features"); 07697 } 07698 *dat = sin( r * (2.0f*M_PI/wavelength) - phase*180/M_PI); 07699 } 07700 } 07701 } 07702 07703 image->update(); 07704 }
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Definition at line 203 of file processor.cpp. |