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Options

Table 4.10: e2proc3d.py Options
Argument Description
   
-h, -help show this help message and exit
-shrink=n Shrinks the image by integer n using median filter
-scale=n Rescales the image by 'n', generally used with clip option.
-clip=x y z xc yc zc Make the output have this size, no scaling.
-fftclip=x y z Make the output have this size, rescaling by padding FFT.
-filter=filtername:param1=val1:param2=val2 Apply a filter named 'filtername' with all its parameters/values.
-apix=APIX A/pixel for S scaling
-origin=x y z Set the coordinates for the pixel (0,0,0).
-mult=f Scales the densities by 'f' in the output
-add=f Adds a constant 'f' to the densities
-calcsf=outputfile Calculate a radial structure factor. Must specify apix.
-tophalf The output only keeps the top half map
-icos5fhalfmap The input is the icos 5f top half map generated by the 'tophalf' option
-outtype=image-type Set output image format, mrc, imagic, hdf, etc
   


next up previous contents index
Next: e2project3d.py Up: e2proc3d.py Previous: Description   Contents   Index
2013-06-11