- A
: EMAN::SVDAnalyzer
- a_tilt
: EMAN::MrcIO::FeiMrcExtHeader
- actmsa
: EMAN::ImagicIO2::Imagic4D
- ali_params
: EMAN::CUDA_multiref_aligner
- all_translation
: EMAN::EMData
- alpha
: EMAN::Util::KaiserBessel, KaiserBessel, EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D
- alpha2
: EMAN::ImagicIO2::Imagic4D
- alphar
: EMAN::Util::KaiserBessel, KaiserBessel
- alt
: EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- amax
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amean
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amin
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amira_file
: EMAN::AmiraIO
- ampcont
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- amplitude
: EMAN::EMData, EMAN::EMAN1Ctf
- angexps
: APMQopt
- angle
: EMAN::ImagicIO2::Imagic4D
- angrefs
: APMQopt
- angvalid
: EMAN::SpiderIO::SpiderHeader
- aoverb
: EMAN::PifIO::PifImageHeader
- apix
: EMAN::SitusIO, EMAN::Ctf
- apix_x
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- apix_y
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- apix_z
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- appliedDefocus
: EMAN::MrcIO::FeiMrcExtHeader
- areasize
: EMAN::AreaProcessor
- array
: EMAN::EMArray< T >
- atomName
: EMAN::PDBReader
- attr_dict
: EMAN::EMData
- au_sym_triangles
: EMAN::Symmetry3D
- avdens
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- az
: EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- d
: d_ang, EMAN::EMObject
- data
: EMAN::XYData, BPKT, EMAN::FourierPixelInserter3D, EMAN::UnevenMatrix, EMAN::CustomVector< type >, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMDataForCuda
- data_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- data_offset_array
: EMAN::SerIO
- data_type
: EMAN::EmIO::EMHeader
- datamode
: EMAN::SerIO
- datatype
: EMAN::VtkIO, EMAN::ImagicIO2, EMAN::ImagicIO
- datatype_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- DataTypeID
: EMAN::SerIO::SerHeader
- datatypeid
: EMAN::SerIO
- date
: EMAN::SpiderIO::SpiderHeader, EMAN::EmIO::EMHeader
- defangle
: EMAN::ImagicIO2::Imagic4D
- default_bins
: EMAN::HistogramBin
- default_emandir
: EMAN::Log
- default_emanlog
: EMAN::Log
- default_max
: EMAN::ClampingProcessor
- default_min
: EMAN::ClampingProcessor
- default_sigma
: EMAN::NSigmaClampingProcessor
- DEFINE_IMAGEIO_FUNC
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- defocus
: EMAN::MrcIO::FeiMrcExtHeader, EMAN::Ctf
- defocus1
: EMAN::ImagicIO2::Imagic4D
- defocus2
: EMAN::ImagicIO2::Imagic4D
- deg2rad
: EMAN::EMConsts
- densmax
: EMAN::ImagicIO2::Imagic4D
- densmin
: EMAN::ImagicIO2::Imagic4D
- depth
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- desc
: EMAN::E2Exception
- desc_data
: EMAN::UnevenMatrix
- desc_dict
: EMAN::TypeDict
- df3file
: EMAN::Df3IO
- dfang
: EMAN::EMAN2Ctf
- dfdiff
: EMAN::EMAN2Ctf
- dict
: EMAN::Dict
- DIFFUSE_COLOR_COUNT
: EMAN::U3DWriter
- dm3file
: EMAN::DM3IO
- dm4file
: EMAN::DM4IO
- dosqrt
: EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor
- drawing_level
: EMAN::MarchingCubes
- dsbg
: EMAN::EMAN2Ctf
- dstart
: EMAN::FitsIO
- dt
: EMAN::AmiraIO
- dtable
: EMAN::Util::KaiserBessel, KaiserBessel
- dtheta
: AlignOptions
- dtype
: EMAN::FitsIO
- dvid
: EMAN::MrcIO::FeiMrcHeader
- dx
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- dy
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- dz
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- e0
: EMAN::Quaternion
- e1
: EMAN::Quaternion
- e2
: EMAN::Quaternion
- e3
: EMAN::Quaternion
- ealpha
: EMAN::ImagicIO2::Imagic4D
- eangle
: EMAN::ImagicIO2::Imagic4D
- ebeta
: EMAN::ImagicIO2::Imagic4D
- efh
: EMAN::EmimIO
- egamma
: EMAN::ImagicIO2::Imagic4D
- eigenimages
: EMAN::PCA
- eigval
: EMAN::PCAlarge, EMAN::PCAsmall
- elements
: EMAN::CustomVector< type >
- elementSym
: EMAN::PDBReader
- em_data
: EMAN::ColorRGBGenerator
- em_file
: EMAN::EmIO
- emdata
: wustl_mm::SkeletonMaker::VolumeData, EMAN::EMObject
- EMDATA_DATA_EXT
: EMAN::TestUtil
- EMDATA_HEADER_EXT
: EMAN::TestUtil
- emh
: EMAN::EmIO
- emim_file
: EMAN::EmimIO
- end
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Log, EMAN::Dict, EMAN::PawelProjector::IPCube
- endian
: EMAN::PifIO::PifFileHeader
- entry_id
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- err3d
: EMAN::ImagicIO2::Imagic4D
- ERR_LIMIT
: EMAN::Transform
- errar
: EMAN::ImagicIO2::Imagic4D
- error
: EMAN::Log, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- even
: EMAN::PifIO::PifFileHeader
- exp_time
: EMAN::MrcIO::FeiMrcExtHeader
- exponent
: EMAN::MaskGaussProcessor
- exshift
: EMAN::ImagicIO2::Imagic4D
- extra
: EMAN::MrcIO::FeiMrcHeader
- eyshift
: EMAN::ImagicIO2::Imagic4D
- ezshift
: EMAN::ImagicIO2::Imagic4D
- f
: EMAN::EMObject
- fac
: EMAN::Util::KaiserBessel, KaiserBessel
- facadj
: EMAN::Util::KaiserBessel, KaiserBessel
- face_size
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- farray
: EMAN::EMObject
- fc
: EMAN::Util::sincBlackman, sincBlackman
- feimrch
: EMAN::MrcIO
- ff
: EMAN::U3DWriter, EMAN::MarchingCubes
- file_offset
: EMAN::VtkIO, EMAN::PgmIO
- file_rw_dict
: EMAN::GlobalCache
- filename
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::E2Exception, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- filetype
: EMAN::VtkIO
- first_h
: EMAN::SpiderIO
- first_ring
: AlignOptions
- fitsfile
: EMAN::FitsIO
- flag
: EMAN::EmimIO::EmimFileHeader
- flags
: EMAN::EMData
- FLOAT_SIZE
: EMAN::XplorIO, EMAN::SitusIO
- fltb
: EMAN::Util::KaiserBessel, EMAN::Util::sincBlackman, KaiserBessel, sincBlackman
- fm
: EMAN::EMFTGL
- font
: EMAN::EMFTGL::EMFTGLFontInstance
- font_file_name
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- font_instances
: EMAN::EMFTGL::EMFTGLManager
- font_mode
: EMAN::EMFTGL::EMFTGLFontInstance
- fp
: EMAN::EMObject
- freenorm
: EMAN::FourierWeightAverager, EMAN::ImageAverager
- fullnx
: EMAN::FourierPixelInserter3D
- fullny
: EMAN::FourierPixelInserter3D
- fullnz
: EMAN::FourierPixelInserter3D
- have_angles
: AlignOptions
- hdr
: BPKT
- HDR_EXT
: EMAN::SalIO
- head
: EMAN::PDBReader, wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- head_length
: EMAN::LstFastIO
- header10
: EMAN::OmapIO::OmapHeader
- header11
: EMAN::OmapIO::OmapHeader
- header12
: EMAN::OmapIO::OmapHeader
- headlen
: EMAN::SpiderIO::SpiderHeader, EMAN::EmimIO::EmimFileHeader
- headrec
: EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- HED_EXT
: EMAN::ImagicIO2, EMAN::ImagicIO
- hed_file
: EMAN::ImagicIO2, EMAN::ImagicIO
- hed_filename
: EMAN::ImagicIO2, EMAN::ImagicIO
- high
: EMAN::RangeThresholdProcessor, EMAN::ExpProcessor
- highpass
: EMAN::HighpassAutoPeakProcessor
- history
: EMAN::ImagicIO2::Imagic4D
- host_big_endian
: EMAN::ByteOrder
- hour
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- ht
: EMAN::MrcIO::FeiMrcExtHeader
- htype
: EMAN::PifIO::PifFileHeader
- HYPERGEOM
: EMAN::Interp
- i
: ccf_point, d_ang
- i0table
: EMAN::Util::KaiserBessel, KaiserBessel
- I2G
: EMAN::EMConsts
- I3G
: EMAN::EMConsts
- I4G
: EMAN::EMConsts
- i4lp
: EMAN::ImagicIO2::Imagic4D
- I5G
: EMAN::EMConsts
- i5lp
: EMAN::ImagicIO2::Imagic4D
- i6lp
: EMAN::ImagicIO2::Imagic4D
- iarray
: EMAN::EMObject
- iblp
: EMAN::ImagicIO::ImagicHeader
- ibsd
: EMAN::ImagicIO::ImagicHeader
- icend
: EMAN::ImagicIO::ImagicHeader
- icos_file
: EMAN::IcosIO
- icosh
: EMAN::IcosIO
- icstart
: EMAN::ImagicIO::ImagicHeader
- id
: ori_t, EMAN::EmimIO::EmimImageHeader
- idtype
: EMAN::MrcIO::FeiMrcHeader
- iend
: EMAN::ImagicIO::ImagicHeader
- ifb
: EMAN::ImagicIO::ImagicHeader
- ignore0
: EMAN::ImageAverager
- ihfl
: EMAN::ImagicIO::ImagicHeader
- ihist
: EMAN::SpiderIO::SpiderHeader
- imag
: EMAN::EMData, EMAN::point_t
- image
: EMAN::ReconstructorVolumeData, EMAN::XYZReconstructor
- IMAGE_DATATYPE_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_HEIGHT_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- image_scores
: EMAN::ImageSort
- image_stack
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- image_stack_filtered
: EMAN::CUDA_Aligner
- IMAGE_THUMB_INDEX_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_WIDTH_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- imageio
: EMAN::LstIO, EMAN::LstFastIO
- imageio_cache
: EMAN::GlobalCache
- imagenum
: EMAN::PifIO::PifImageHeader
- images
: EMAN::Analyzer
- imagich
: EMAN::ImagicIO2, EMAN::ImagicIO
- imavers
: EMAN::ImagicIO2::Imagic4D
- imax
: EMAN::OmapIO::OmapHeader
- imean
: EMAN::OmapIO::OmapHeader
- IMG_EXT
: EMAN::SalIO, EMAN::ImagicIO2, EMAN::ImagicIO
- img_file
: EMAN::ImagicIO2, EMAN::ImagicIO
- img_filename
: EMAN::ImagicIO2, EMAN::ImagicIO
- img_index
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- imgnum
: EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- imin
: EMAN::OmapIO::OmapHeader
- imstr
: EMAN::ImagicIO::ImagicHeader
- imstw
: EMAN::ImagicIO::ImagicHeader
- in
: EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- index
: EMAN::Matrix4, EMAN::Matrix3, EMAN::ImageScore
- informat
: EMAN::ImagicIO2::Imagic4D
- initialized
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- inn
: EMAN::ImagicIO::ImagicHeader
- inner
: EMAN::ColorRGBGenerator
- inner_radius
: EMAN::CircularMaskProcessor
- inner_radius_square
: EMAN::CircularMaskProcessor
- inserter
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- instance
: EMAN::GlobalCache, EMAN::Log
- INTEGER_SIZE
: EMAN::XplorIO
- intercept
: EMAN::LinearRampProcessor
- inuse
: EMAN::SpiderIO::SpiderHeader
- ip
: EMAN::EMObject
- iphi
: ori_t
- iplus
: EMAN::OmapIO::OmapHeader
- iprod
: EMAN::OmapIO::OmapHeader
- irec
: EMAN::SpiderIO::SpiderHeader
- is_big_endian
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::GatanDM4::TagTable, EMAN::DM3IO, EMAN::Gatan::TagTable, EMAN::AmiraIO
- is_complex
: EMAN::EMData, EMAN::CoordinateProcessor
- is_host_endian_checked
: EMAN::ByteOrder
- is_new_file
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::PifIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::IcosIO, EMAN::FitsIO, EMAN::EmIO, EMAN::Df3IO
- is_new_hed
: EMAN::ImagicIO2, EMAN::ImagicIO
- is_new_img
: EMAN::ImagicIO2, EMAN::ImagicIO
- is_new_ver
: EMAN::EmIO::EMHeader
- is_ri
: EMAN::EMData, EMAN::MrcIO
- is_transpose
: EMAN::MrcIO
- isFEI
: EMAN::MrcIO
- isigma
: EMAN::OmapIO::OmapHeader
- iskip
: APMDopt
- ispg
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- istack
: EMAN::SpiderIO::SpiderHeader
- istart
: EMAN::ImagicIO::ImagicHeader
- istep
: APMQopt
- item_cache
: EMAN::EMCache< T >
- itht
: ori_t
- ixold
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- iyold
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- izlp
: EMAN::ImagicIO2::Imagic4D
- izold
: EMAN::ImagicIO2::Imagic4D
- label
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- labels
: EMAN::MrcIO::MrcHeader
- labl
: EMAN::MrcIO::FeiMrcHeader
- last_lst_index
: EMAN::LstIO, EMAN::LstFastIO
- last_ref_index
: EMAN::LstIO, EMAN::LstFastIO
- last_ring
: AlignOptions
- lastindx
: EMAN::SpiderIO::SpiderHeader
- lastlr
: EMAN::ImagicIO::ImagicHeader
- lastlw
: EMAN::ImagicIO::ImagicHeader
- lbr
: EMAN::ImagicIO::ImagicHeader
- lbuf
: EMAN::ImagicIO::ImagicHeader
- lbw
: EMAN::ImagicIO::ImagicHeader
- lcbr
: EMAN::ImagicIO::ImagicHeader
- lcbw
: EMAN::ImagicIO::ImagicHeader
- leff
: EMAN::ImagicIO::ImagicHeader
- len
: BPKT, EMAN::Gatan2IO::Gatan2Header
- length
: EMAN::Vector4, EMAN::Vector3, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, methodName
- lens
: EMAN::MrcIO::FeiMrcHeader
- linbuf
: EMAN::ImagicIO::ImagicHeader
- LINE_LENGTH
: EMAN::SitusIO
- line_length
: EMAN::LstFastIO
- linenum
: EMAN::E2Exception
- lines
: EMAN::PDBReader
- loc
: EMAN::Log, EMAN::PawelProjector::IPCube
- location
: EMAN::Log
- locold
: EMAN::ImagicIO2::Imagic4D
- log_level
: EMAN::Log
- low
: EMAN::RangeThresholdProcessor, EMAN::ExpProcessor
- lst_file
: EMAN::LstIO, EMAN::LstFastIO
- M
: EMAN::Util::sincBlackman, sincBlackman
- m_amp_contrast
: EMAN::file_store
- m_ampcont
: ctf_store_new, ctf_store
- m_azz
: ctf_store_new, ctf_store
- m_bfactor
: ctf_store_new, ctf_store
- m_bin_file
: EMAN::file_store, EMAN::newfile_store
- m_bin_if
: EMAN::newfile_store
- m_bin_of
: EMAN::newfile_store
- m_bin_ohandle
: EMAN::file_store
- m_count
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_cs
: ctf_store_new, ctf_store
- m_Cs
: EMAN::file_store
- m_ctf
: EMAN::file_store, EMAN::newfile_store
- m_ctf_applied
: EMAN::file_store
- m_data
: EMAN::varimax
- m_defocus
: ctf_store_new, ctf_store
- m_defocuses
: EMAN::file_store
- m_dza
: ctf_store_new, ctf_store
- m_ihandle
: EMAN::file_store
- m_mask
: EMAN::varimax
- m_mean
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- m_ndim
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_nfac
: EMAN::varimax
- m_nlen
: EMAN::varimax
- m_npad
: EMAN::file_store, EMAN::newfile_store, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_nsym
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_offsets
: EMAN::newfile_store
- m_osnr
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_phis
: EMAN::file_store
- m_pixel
: ctf_store_new, ctf_store, EMAN::file_store
- m_points
: EMAN::newfile_store
- m_prev
: EMAN::file_store
- m_psis
: EMAN::file_store
- m_sigma_squared
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- m_sign
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_sizeofprojection
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_snr
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_symmetry
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_thetas
: EMAN::file_store
- m_totsize
: EMAN::file_store
- m_txt_file
: EMAN::file_store, EMAN::newfile_store
- m_txt_of
: EMAN::newfile_store
- m_txt_ohandle
: EMAN::file_store
- m_varsnr
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_vecsize
: ctf_store_new, ctf_store
- m_vnx
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnxc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnxp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vny
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnyc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnyp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnz
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnzc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnzp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_voltage
: ctf_store_new, ctf_store, EMAN::file_store
- m_volume
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_weighting
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wghta
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wghtb
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_winsize
: ctf_store_new, ctf_store
- m_winsize2
: ctf_store_new, ctf_store
- m_wptr
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wptr2
: EMAN::nnSSNR_ctfReconstructor, EMAN::nnSSNR_Reconstructor
- m_wptr3
: EMAN::nnSSNR_ctfReconstructor
- m_write
: EMAN::file_store
- m_x_out
: EMAN::file_store
- m_xratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_xscale
: EMAN::nn4_rectReconstructor
- m_y_out
: EMAN::file_store
- m_yratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_yscale
: EMAN::nn4_rectReconstructor
- m_z_out
: EMAN::file_store
- m_zratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- machine
: EMAN::EmIO::EMHeader
- machinestamp
: EMAN::MrcIO::MrcHeader
- magic
: EMAN::PifIO::PifFileHeader, EMAN::EmimIO::EmimFileHeader
- MAGIC
: EMAN::VtkIO, EMAN::SalIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::EmimIO, EMAN::AmiraIO
- MAGIC_ASCII
: EMAN::PgmIO
- MAGIC_BINARY
: EMAN::PgmIO
- magnification
: EMAN::MrcIO::FeiMrcExtHeader
- map
: EMAN::MrcIO::MrcHeader
- mapabang
: EMAN::PifIO::PifImageHeader
- mapc
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- mapr
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- maps
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- mask
: EMAN::PointArray, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer
- mask3D
: AlignOptions
- mat
: EMAN::Matrix4, EMAN::Matrix3
- matrix
: EMAN::Transform
- matrix_size
: EMAN::AreaProcessor
- max
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::MinMaxAverager
- max2
: EMAN::MrcIO::FeiMrcHeader
- max3
: EMAN::MrcIO::FeiMrcHeader
- max4
: EMAN::MrcIO::FeiMrcHeader
- MAX_IMAGE_BATCH
: EMAN::CUDA_multiref_aligner
- maxim
: EMAN::SpiderIO::SpiderHeader
- maximum
: EMAN::ColorRGBGenerator
- maxit
: AlignOptions
- maxiter
: EMAN::KMeansAnalyzer
- maxLength
: EMAN::PriorityQueue< ValueT, KeyT >
- maxval
: EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::PgmIO
- maxvals
: EMAN::MarchingCubes
- mClasses
: EMAN::BoxSVDClassifier
- mColumns
: EMAN::BoxSVDClassifier
- mData
: EMAN::BoxSVDClassifier
- mday
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- mDFreq
: EMAN::FourierInserter3DMode8
- mean
: EMAN::Util, EMAN::SpiderIO::SpiderHeader, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::PifIO::PifImageHeader
- mean_int
: EMAN::MrcIO::FeiMrcExtHeader
- mean_x_spacing
: EMAN::XYData
- mFreqCutoff
: EMAN::FourierInserter3DMode8
- mgnum
: EMAN::EmimIO::EmimImageHeader
- mident
: EMAN::ImagicIO2::Imagic4D
- min
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::AbsMaxMinAverager
- min2
: EMAN::MrcIO::FeiMrcHeader
- min3
: EMAN::MrcIO::FeiMrcHeader
- min4
: EMAN::MrcIO::FeiMrcHeader
- minchange
: EMAN::KMeansAnalyzer
- minimum
: EMAN::ColorRGBGenerator
- mininclass
: EMAN::KMeansAnalyzer
- minute
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- minval
: EMAN::PgmIO
- minvals
: EMAN::MarchingCubes
- mirror
: ccf_point, d_ang
- misc
: EMAN::ImagicIO::ImagicHeader, EMAN::EmimIO::EmimFileHeader
- mmvalid
: EMAN::SpiderIO::SpiderHeader
- mode
: APMDopt, APMQopt, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::EmIO, EMAN::EMFTGL, EMAN::BoxingTools
- mode_size
: EMAN::PifIO, EMAN::MrcIO, EMAN::EmIO
- month
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- mr
: APMDopt, APMQopt
- mrc1
: EMAN::ImagicIO::ImagicHeader
- mrc2
: EMAN::ImagicIO::ImagicHeader
- mrcfile
: EMAN::MrcIO
- mrch
: EMAN::MrcIO
- mrcX
: EMAN::PifIO::PifFileHeader
- mrcY
: EMAN::PifIO::PifFileHeader
- mrcZ
: EMAN::PifIO::PifFileHeader
- mRows
: EMAN::BoxSVDClassifier
- mx
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- my
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- my_dict
: EMAN::Factory< T >
- my_instance
: EMAN::Factory< T >
- mz
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- N
: EMAN::Util::KaiserBessel, KaiserBessel
- n
: EMAN::PointArray, EMAN::PDBReader, EMAN::ImageSort, EMAN::EMObject
- nalisum
: EMAN::ImagicIO2::Imagic4D
- NAME
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner
- name
: EMAN::_UnexpectedBehaviorException, EMAN::_BadAllocException, EMAN::_EmptyContainerException, EMAN::_InvalidParameterException, EMAN::_InvalidCallException, EMAN::_OutofRangeException, EMAN::_InvalidStringException, EMAN::_InvalidValueException, EMAN::_TypeException, EMAN::_NullPointerException, EMAN::_ImageWriteException, EMAN::_ImageReadException, EMAN::_FileAccessException, EMAN::_ImageDimensionException, EMAN::_ImageFormatException, EMAN::_NotExistingObjectException, EMAN::E2Exception, methodName, EMAN::EmimIO::EmimImageHeader, EMAN::EmimIO::EmimFileHeader, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- name_cache
: EMAN::EMCache< T >
- ncflag
: EMAN::ImagicIO::ImagicHeader
- nchanged
: EMAN::KMeansAnalyzer
- ncls
: EMAN::KMeansAnalyzer
- ncov
: EMAN::PCAlarge, EMAN::PCAsmall
- nd1
: EMAN::MrcIO::FeiMrcHeader
- nd2
: EMAN::MrcIO::FeiMrcHeader
- ndim
: EMAN::FloatPoint, EMAN::IntPoint
- needtobind
: EMAN::MarchingCubes
- needtorecolor
: EMAN::ColorRGBGenerator
- new_nx
: EMAN::EMData::ClipInplaceVariables
- new_ny
: EMAN::EMData::ClipInplaceVariables
- new_nz
: EMAN::EMData::ClipInplaceVariables
- new_x_left
: EMAN::EMData::ClipInplaceVariables
- new_x_right
: EMAN::EMData::ClipInplaceVariables
- new_y_back
: EMAN::EMData::ClipInplaceVariables
- new_y_front
: EMAN::EMData::ClipInplaceVariables
- new_z_bottom
: EMAN::EMData::ClipInplaceVariables
- new_z_top
: EMAN::EMData::ClipInplaceVariables
- next
: EMAN::MrcIO::FeiMrcHeader, wustl_mm::SkeletonMaker::gridQueueEle
- NFLOAT_PER_LINE
: EMAN::XplorIO, EMAN::SitusIO
- nhalf
: EMAN::ImagicIO::ImagicHeader
- nhistrec
: EMAN::SpiderIO::SpiderHeader
- niactive
: EMAN::ImagicIO2::Imagic4D
- NIMA
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nimages
: EMAN::PCAlarge, EMAN::PCAsmall
- nimg
: EMAN::SerIO, EMAN::PifIO::PifFileHeader, EMAN::LstIO, EMAN::LstFastIO, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer
- nitems
: EMAN::EMCache< T >
- nlabels
: EMAN::MrcIO::MrcHeader
- nlabl
: EMAN::MrcIO::FeiMrcHeader
- nlines_in_header
: EMAN::XplorIO
- nmetric
: EMAN::ImagicIO2::Imagic4D
- nn
: EMAN::EMData, EMAN::U3DWriter, EMAN::MarchingCubes
- noise1
: EMAN::EMAN1Ctf
- noise2
: EMAN::EMAN1Ctf
- noise3
: EMAN::EMAN1Ctf
- noise4
: EMAN::EMAN1Ctf
- norm
: EMAN::Quaternion, EMAN::FourierPixelInserter3D
- norm_image
: EMAN::TomoAverager
- normimage
: EMAN::FourierWeightAverager, EMAN::ImageAverager
- not_used1
: EMAN::EmIO::EMHeader
- nparm
: EMAN::EmimIO::EmimImageHeader
- npeaks
: EMAN::PeakOnlyProcessor
- nr
: APMDopt, APMQopt
- NREF
: EMAN::CUDA_multiref_aligner
- NRING
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nrow
: EMAN::SpiderIO::SpiderHeader
- nsam
: EMAN::SpiderIO::SpiderHeader
- nslice
: EMAN::SpiderIO::SpiderHeader
- nsofar
: EMAN::SVDAnalyzer
- nsymbt
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- ntable
: EMAN::Util::KaiserBessel, EMAN::Util::sincBlackman, KaiserBessel, sincBlackman
- ntotbuf
: EMAN::ImagicIO::ImagicHeader
- num
: EMAN::ImagicIO::ImagicHeader
- num_triangles
: EMAN::Symmetry3D
- NumberDimensions
: EMAN::SerIO::SerHeader
- numcls
: EMAN::ImagicIO2::Imagic4D
- numeigen
: EMAN::ImagicIO2::Imagic4D
- numEles
: wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- numfloats
: EMAN::MrcIO::FeiMrcHeader
- numintegers
: EMAN::MrcIO::FeiMrcHeader
- nvec
: EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer
- NX
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nx
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::PgmIO, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- nx2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nxstart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- nxy
: EMAN::EMData
- nxyz
: EMAN::FourierPixelInserter3D, EMAN::EMData
- ny
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::PgmIO, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- NY
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ny2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nystart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- nz
: EMAN::XplorIO, EMAN::VtkIO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO::IcosHeader, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- nz2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nzstart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- pad
: EMAN::Util, wustl_mm::SkeletonMaker::Volume, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader
- param
: EMAN::EmimIO::EmimImageHeader
- parameters
: EMAN::EmIO::EMHeader
- params
: EMAN::Projector, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::Averager, EMAN::Analyzer, EMAN::Aligner
- parent_group
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- path
: EMAN::EMData
- pathnum
: EMAN::EMData
- pcoher
: EMAN::ImagicIO2::Imagic4D
- peak
: CudaPeakInfoFloat, CudaPeakInfo
- permissable_2d_not_rot
: EMAN::Transform
- permissable_3d_not_rot
: EMAN::Transform
- permissable_rot_keys
: EMAN::Transform
- pfh
: EMAN::PifIO
- pgm_file
: EMAN::PgmIO
- pgroup
: EMAN::ImagicIO2::Imagic4D
- phi
: EMAN::SpiderIO::SpiderHeader, EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- phi1
: EMAN::Util::tmpstruct, EMAN::SpiderIO::SpiderHeader, tmpstruct
- phi2
: EMAN::SpiderIO::SpiderHeader
- pi
: EMAN::EMConsts
- pif_file
: EMAN::PifIO
- pixel
: EMAN::SalIO, EMAN::EmimIO::EmimFileHeader, EMAN::AmiraIO
- pixel_size
: EMAN::MrcIO::FeiMrcExtHeader
- pixels
: EMAN::ImagicIO::ImagicHeader, EMAN::SVDAnalyzer
- platonic_params
: EMAN::PlatonicSym
- point_map
: EMAN::MarchingCubes
- pointInfo
: EMAN::PDBReader
- pointRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- points
: EMAN::PointArray, EMAN::PDBReader
- pos2
: EMAN::point_t
- pp
: EMAN::U3DWriter, EMAN::MarchingCubes
- pre
: wustl_mm::SkeletonMaker::GridQueue2
- prepre
: wustl_mm::SkeletonMaker::GridQueue2
- progname
: EMAN::TestUtil
- program
: EMAN::PifIO::PifFileHeader
- PRUNING_CLASS_PRUNE_CURVES
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PRUNING_CLASS_PRUNE_POINTS
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PRUNING_CLASS_PRUNE_SURFACES
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- prv_nx
: EMAN::EMData::ClipInplaceVariables
- prv_ny
: EMAN::EMData::ClipInplaceVariables
- prv_nz
: EMAN::EMData::ClipInplaceVariables
- prv_x_left
: EMAN::EMData::ClipInplaceVariables
- prv_x_right
: EMAN::EMData::ClipInplaceVariables
- prv_y_back
: EMAN::EMData::ClipInplaceVariables
- prv_y_front
: EMAN::EMData::ClipInplaceVariables
- prv_z_bottom
: EMAN::EMData::ClipInplaceVariables
- prv_z_top
: EMAN::EMData::ClipInplaceVariables
- pseq
: BPKT
- psi1
: EMAN::SpiderIO::SpiderHeader
- psi2
: EMAN::SpiderIO::SpiderHeader
- ptype
: EMAN::EmimIO::EmimImageHeader
- pWords
: EMAN::PDBReader
- pwr
: EMAN::ValuePowProcessor
- px
: CudaPeakInfo
- py
: CudaPeakInfo
- pz
: CudaPeakInfo
- r
: EMAN::Util::KaiserBessel, KaiserBessel, EMAN::Randnum, EMAN::PifIO::PifColorMap
- r1
: EMAN::PaintProcessor
- r2
: EMAN::PaintProcessor
- rad2deg
: EMAN::EMConsts
- radius
: EMAN::PifIO::PifImageHeader
- radius_x
: EMAN::MaskGaussNonuniformProcessor
- radius_y
: EMAN::MaskGaussNonuniformProcessor
- radius_z
: EMAN::MaskGaussNonuniformProcessor
- range
: APMDopt, APMQopt, EMAN::CollapseProcessor
- rdata
: EMAN::EMData
- rdonly
: EMAN::ImagicIO::ImagicHeader
- real
: EMAN::Quaternion, EMAN::EMData, EMAN::point_t
- real_scale_factor
: EMAN::PifIO
- REAL_TYPE_MAGIC
: EMAN::ImagicIO2, EMAN::ImagicIO
- reals
: EMAN::ImagicIO::ImagicHeader
- realtype
: EMAN::ImagicIO2::Imagic4D
- reclen
: EMAN::SpiderIO::SpiderHeader
- record_length
: EMAN::SalIO
- ref
: EMAN::ImagicIO2::Imagic4D
- ref3d
: EMAN::ImagicIO2::Imagic4D
- ref_angle_type
: AlignOptions
- ref_filename
: EMAN::LstIO, EMAN::LstFastIO
- ref_image_stack
: EMAN::CUDA_multiref_aligner
- ref_image_stack_filtered
: EMAN::CUDA_multiref_aligner
- remainder
: EMAN::MrcIO::FeiMrcExtHeader
- rendermax
: EMAN::PgmIO
- rendermin
: EMAN::PgmIO
- repqual
: EMAN::ImagicIO2::Imagic4D
- residueName
: EMAN::PDBReader
- resNum
: EMAN::PDBReader
- resolx
: EMAN::ImagicIO2::Imagic4D
- resoly
: EMAN::ImagicIO2::Imagic4D
- resolz
: EMAN::ImagicIO2::Imagic4D
- result
: EMAN::XYZAverager, EMAN::Averager
- rgb
: EMAN::ColorRGBGenerator
- rgbgenerator
: EMAN::MarchingCubes
- rgbmode
: EMAN::ColorRGBGenerator
- ri
: AlignOptions
- ring_avg
: EMAN::MaskEdgeMeanProcessor
- RING_LENGTH
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ring_width
: EMAN::MaskEdgeMeanProcessor
- rms
: EMAN::MrcIO::MrcHeader
- rot_fp
: EMAN::EMData
- rsize
: EMAN::ImagicIO2::Imagic4D
- rstep
: AlignOptions
- rttwopisigma
: EMAN::Util::Gaussian, Gaussian
- rw_mode
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- rX
: t_BPCQ_line
- sal_file
: EMAN::SalIO
- sBtable
: EMAN::Util::sincBlackman, sincBlackman
- scale
: EMAN::Transform, EMAN::EMData, EMAN::SpiderIO::SpiderHeader, EMAN::LinearXformProcessor, EMAN::OmapIO::OmapHeader, EMAN::OptVarianceCmp
- scale2
: EMAN::OmapIO::OmapHeader
- scale_fac
: EMAN::PifIO::PifFileHeader
- scalefactor
: EMAN::PifIO::PifFileHeader
- scan_mode
: EMAN::SalIO
- scannum
: EMAN::PifIO::PifImageHeader
- score
: wustl_mm::SkeletonMaker::gridQueueEle, EMAN::ImageScore
- sec
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- SECTION_MODE
: EMAN::XplorIO
- serfile
: EMAN::SerIO
- serh
: EMAN::SerIO
- SeriesID
: EMAN::SerIO::SerHeader
- SeriesVersion
: EMAN::SerIO::SerHeader
- shift
: EMAN::LinearXformProcessor, EMAN::OptVarianceCmp
- SHORT_CTF_MAGIC
: EMAN::MrcIO
- shrange
: APMQopt
- si
: EMAN::EMObject
- sigma
: EMAN::Util::Gaussian, EMAN::SpiderIO::SpiderHeader, Gaussian, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::LoGFourierProcessor, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- sigma1
: EMAN::DoGFourierProcessor
- sigma2
: EMAN::DoGFourierProcessor
- sigma_image
: EMAN::IterationAverager, EMAN::ImageAverager
- singular_vals
: EMAN::PCA
- sinoend
: EMAN::ImagicIO2::Imagic4D
- sinostart
: EMAN::ImagicIO2::Imagic4D
- sirt_lam
: AlignOptions
- sirt_maxit
: AlignOptions
- sirt_tol
: AlignOptions
- SITUS_HEADER_LINES
: EMAN::SitusIO
- situsfile
: EMAN::SitusIO
- size
: EMAN::ImageSort, EMAN::Dict, EMAN::TypeDict, EMAN::EMArray< T >, EMAN::CustomVector< type >, EMAN::Region, EMAN::EMCache< T >
- skeletonDirectionRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- slice_value
: EMAN::MaskGaussInvProcessor
- slope
: EMAN::LinearRampProcessor
- slowseed
: EMAN::KMeansAnalyzer
- snr
: AlignOptions, EMAN::EMAN2Ctf
- snrsum
: EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager
- spaberr
: EMAN::ImagicIO2::Imagic4D
- space
: EMAN::ImagicIO::ImagicHeader
- space2
: EMAN::ImagicIO::ImagicHeader
- space3
: EMAN::ImagicIO::ImagicHeader
- spacingx
: EMAN::VtkIO
- spacingy
: EMAN::VtkIO
- spacingz
: EMAN::VtkIO
- SPECULAR_COLOR_COUNT
: EMAN::U3DWriter
- spider_file
: EMAN::SpiderIO
- stamp
: EMAN::IcosIO::IcosHeader
- stamp1
: EMAN::IcosIO::IcosHeader
- stamp2
: EMAN::IcosIO::IcosHeader
- stamp3
: EMAN::IcosIO::IcosHeader
- start
: EMAN::PawelProjector::IPCube
- step
: AlignOptions
- STEP
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- str
: EMAN::EMObject
- strarray
: EMAN::EMObject
- sub
: EMAN::EMData, EMAN::MrcIO::FeiMrcHeader
- subnx
: EMAN::ReconstructorVolumeData
- subny
: EMAN::ReconstructorVolumeData
- subnz
: EMAN::ReconstructorVolumeData
- subx0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- suby0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- subz0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- sum
: EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor
- supp
: EMAN::EMData
- surfaceRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- symmetry
: AlignOptions
- T
: EMAN::Randnum
- tag_offset_array
: EMAN::SerIO
- tag_type
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- tags
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- tagtable
: EMAN::DM4IO, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::DM3IO, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- TagTypeID
: EMAN::SerIO::SerHeader
- tail
: EMAN::PDBReader, wustl_mm::SkeletonMaker::GridQueue
- ter_stop
: EMAN::PDBReader
- tf
: EMAN::Util, EMAN::TestUtil
- theta
: EMAN::SpiderIO::SpiderHeader
- theta1
: EMAN::Util::tmpstruct, EMAN::SpiderIO::SpiderHeader, tmpstruct
- theta2
: EMAN::SpiderIO::SpiderHeader
- THINNING_CLASS_CURVE_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_CURVE_PRESERVATION_2D
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_POINT_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_SURFACE_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_TOPOLOGY_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- thresh_sigma
: EMAN::TomoAverager
- ti
: EMAN::TestUtil
- tilt_axis
: EMAN::MrcIO::FeiMrcExtHeader
- tiltangles
: EMAN::MrcIO::FeiMrcHeader
- time
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::EmimIO::EmimImageHeader
- title
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::IcosIO::IcosHeader
- tmp_data
: EMAN::ReconstructorVolumeData
- to
: EMAN::FiniteProcessor
- tot_size
: EMAN::UnevenMatrix
- totalalloc
: EMAN::EMData
- TotalNumberElements
: EMAN::SerIO::SerHeader
- transformarray
: EMAN::EMObject
- twosigma2
: EMAN::Util::Gaussian, Gaussian
- type
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::EMObject
- type_dict
: EMAN::TypeDict
- type_registry
: EMAN::EMObject
- v
: EMAN::Util::KaiserBessel, KaiserBessel
- v1
: EMAN::PaintProcessor
- v2
: EMAN::PaintProcessor
- v4l_file
: EMAN::V4L2IO
- vadjust
: EMAN::Util::KaiserBessel, KaiserBessel
- ValidNumberElements
: EMAN::SerIO::SerHeader
- value
: ccf_point, EMAN::MaskSharpProcessor, EMAN::RealPixelProcessor, EMAN::Pixel
- value1
: EMAN::SigmaProcessor
- value2
: EMAN::SigmaProcessor
- valueQueue
: EMAN::PriorityQueue< ValueT, KeyT >
- values
: EMAN::Dict, assign_groups_comparator
- varia
: EMAN::ImagicIO::ImagicHeader
- vd1
: EMAN::MrcIO::FeiMrcHeader
- vd2
: EMAN::MrcIO::FeiMrcHeader
- vec
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- verbose
: EMAN::KMeansAnalyzer
- version
: EMAN::Gatan2IO::Gatan2Header
- volData
: wustl_mm::SkeletonMaker::Volume
- voltage
: EMAN::ImagicIO2::Imagic4D, EMAN::Ctf
- vp
: EMAN::EMObject
- vtable
: EMAN::Util::KaiserBessel, KaiserBessel
- vtk_file
: EMAN::VtkIO
- vv
: EMAN::MarchingCubes
- x
: EMAN::XYData::Pair, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, point3d_t, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- x0
: EMAN::UnevenMatrix::Xdim
- x1
: EMAN::UnevenMatrix::Xdim
- x_iter
: EMAN::EMData::ClipInplaceVariables
- x_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- x_shift
: EMAN::MrcIO::FeiMrcExtHeader
- x_stage
: EMAN::MrcIO::FeiMrcExtHeader
- xbb
: t_BPCQ_line
- xc
: EMAN::CircularMaskProcessor
- xf
: EMAN::SpiderIO::SpiderHeader
- xintp
: CudaPeakInfoFloat
- xlen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- xoff
: EMAN::EMArray< T >, EMAN::EMData
- xorg
: EMAN::MrcIO::FeiMrcHeader
- xorigin
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- xplor_file
: EMAN::XplorIO
- xrng
: AlignOptions
- xshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- xstart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
- xydata
: EMAN::EMObject
- xyz_file
: EMAN::XYZIO
- y
: EMAN::XYData::Pair, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, point3d_t, stcom_, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- y_iter
: EMAN::EMData::ClipInplaceVariables
- y_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- y_shift
: EMAN::MrcIO::FeiMrcExtHeader
- y_stage
: EMAN::MrcIO::FeiMrcExtHeader
- ybb
: t_BPCQ_line
- yc
: EMAN::CircularMaskProcessor
- year
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- yintp
: CudaPeakInfoFloat
- ylen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- ymax
: EMAN::XYData
- ymin
: EMAN::XYData
- yoff
: EMAN::EMArray< T >, EMAN::EMData
- yorg
: EMAN::MrcIO::FeiMrcHeader
- yorigin
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- yrng
: AlignOptions
- yshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- ystart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
- z
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, point3d_t, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- z_iter
: EMAN::EMData::ClipInplaceVariables
- z_stage
: EMAN::MrcIO::FeiMrcExtHeader
- zc
: EMAN::CircularMaskProcessor
- zero_to
: EMAN::RecipCarefullyProcessor
- zfac
: EMAN::MrcIO::FeiMrcHeader
- zintp
: CudaPeakInfoFloat
- zlen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- zoff
: EMAN::EMArray< T >, EMAN::EMData
- zorg
: EMAN::MrcIO::FeiMrcHeader
- zorigin
: EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- zshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- zstart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
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