- abs()
: EMAN::Quaternion
- absi()
: EMAN::EMData
- AbsMaxMinAverager()
: EMAN::AbsMaxMinAverager
- accrue_mean()
: EMAN::MeanShrinkProcessor
- accrue_mean_one_p_five()
: EMAN::MeanShrinkProcessor
- accrue_median()
: EMAN::MedianShrinkProcessor
- add()
: EMAN::PriorityQueue< ValueT, KeyT >, EMAN::Factory< T >, EMAN::EMData, EMAN::EMCache< T >, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- add_complex_at()
: EMAN::EMData
- add_complex_at_fast()
: EMAN::EMData
- add_data()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- add_image()
: EMAN::file_store, EMAN::newfile_store, EMAN::XYZAverager, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager
- add_image_list()
: EMAN::Averager
- add_imageio()
: EMAN::GlobalCache
- add_img()
: EMAN::Util
- add_img2()
: EMAN::Util
- add_img_abs()
: EMAN::Util
- add_incoherent()
: EMAN::EMData
- add_orientation()
: EMAN::OrientationGenerator
- add_tovol()
: EMAN::newfile_store
- addn_img()
: EMAN::Util
- addsquare()
: EMAN::EMData
- agauss()
: EMAN::Util
- ali2d_ccf_list()
: EMAN::Util
- ali2d_single_iter()
: EMAN::CUDA_Aligner
- align()
: EMAN::XYZAligner, EMAN::EMData, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- align_180_ambiguous()
: EMAN::RotationalAligner
- align_2d()
: EMAN::PointArray
- align_trans_2d()
: EMAN::PointArray
- align_using_base()
: EMAN::ScaleAlignerABS
- alignment_2d()
: EMAN::CUDA_Aligner
- AlignOptions()
: AlignOptions
- alloc_data()
: EMAN::UnevenMatrix
- alrl_ms()
: EMAN::Util
- AmiraIO()
: EMAN::AmiraIO
- amplitude()
: EMAN::EMData, EMAN::EMAN1Ctf
- analyze()
: EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer
- Analyzer()
: EMAN::Analyzer
- ang_diff()
: EMAN::Util
- ang_n()
: EMAN::Util
- ang_to_xyz()
: EMAN::Util
- angle_err_ri()
: EMAN::Util
- angle_sub_2pi()
: EMAN::Util
- angle_sub_pi()
: EMAN::Util
- ap2ri()
: EMAN::Util, EMAN::EMData
- append_image()
: EMAN::EMData
- apply_precision()
: EMAN::Util
- apply_radial_func()
: EMAN::EMData
- Applyws()
: EMAN::Util
- approxEqual()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3
- Are26Neighbors()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- AreaProcessor()
: EMAN::AreaProcessor
- areav_()
: EMAN::Util
- array_mutation()
: EMAN::Util
- as_list()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion
- assert_valid_2d()
: EMAN::Transform
- assert_valid_aspect()
: EMAN::IntTranslateProcessor, EMAN::TransformProcessor
- assign_groups()
: EMAN::Util
- assign_groups_comparator()
: assign_groups_comparator
- assign_projangles()
: EMAN::Util
- at()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Transform
- auto_correlation_pick()
: EMAN::BoxingTools
- average_circ_sub()
: EMAN::EMData
- Averager()
: EMAN::Averager
- backproject()
: EMAN::EMData
- backproject3d()
: EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::XYZProjector
- BackProjectionReconstructor()
: EMAN::BackProjectionReconstructor
- bb_enumerateMPI_()
: EMAN::Util
- bckpj3()
: EMAN::ChaoProjector
- become_big_endian()
: EMAN::ByteOrder
- become_host_endian()
: EMAN::ImageIO, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- become_little_endian()
: EMAN::ByteOrder
- begin()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Log, EMAN::Dict
- bilinear()
: EMAN::Util
- bilinear_interpolate()
: EMAN::Util
- binary_operate()
: EMAN::MinPixelOperator, EMAN::MaxPixelOperator
- bispecRotTransInvDirect()
: EMAN::EMData
- bispecRotTransInvN()
: EMAN::EMData
- bounding_box()
: EMAN::EMFTGL
- BoxingTools()
: EMAN::BoxingTools
- BoxSVDClassifier()
: EMAN::BoxSVDClassifier
- BPCQ()
: EMAN::Util
- branch_factor_0()
: EMAN::Util
- branch_factor_2()
: EMAN::Util
- branch_factor_3()
: EMAN::Util
- branch_factor_4()
: EMAN::Util
- branchMPI()
: EMAN::Util
- build_I0table()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- build_sBtable()
: EMAN::Util::sincBlackman, sincBlackman
- buildFFTVolume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- buildNorm2Volume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nnSSNR_Reconstructor
- buildNorm3Volume()
: EMAN::nnSSNR_ctfReconstructor
- buildNormVolume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- cache_au_planes()
: EMAN::Symmetry3D
- calc_amp1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_amplitude()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_az_dist()
: EMAN::EMData
- calc_bessel()
: EMAN::Util
- calc_best_fft_size()
: EMAN::Util
- calc_bilinear_least_square()
: EMAN::Util
- calc_ccf()
: EMAN::EMData
- calc_ccfx()
: EMAN::EMData
- calc_center_density()
: EMAN::EMData
- calc_center_of_mass()
: EMAN::EMData
- calc_correlation()
: EMAN::XYData
- calc_ctf1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_dist()
: EMAN::EMData
- calc_fast_sigma_image()
: EMAN::EMData
- calc_flcf()
: EMAN::EMData
- calc_fourier_shell_correlation()
: EMAN::EMData
- calc_g1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_g2()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_gamma()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_highest_locations()
: EMAN::EMData
- calc_hist()
: EMAN::EMData
- calc_lambda()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_least_square_fit()
: EMAN::Util
- calc_locals()
: EMAN::MaskGaussInvProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor
- calc_max_index()
: EMAN::EMData
- calc_max_location()
: EMAN::EMData
- calc_max_location_wrap()
: EMAN::EMData
- calc_max_location_wrap_intp()
: EMAN::EMData
- calc_mean()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_min_index()
: EMAN::EMData
- calc_min_location()
: EMAN::EMData
- calc_mutual_correlation()
: EMAN::EMData
- calc_n_highest_locations()
: EMAN::EMData
- calc_noise()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_radial_dist()
: EMAN::EMData
- calc_ref_image_index()
: EMAN::LstIO, EMAN::LstFastIO
- calc_sigma()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_sigma_diff()
: EMAN::EMData
- calc_snr()
: EMAN::EMAN1Ctf
- calculate_min_max_vals()
: EMAN::MarchingCubes
- calculate_surface()
: EMAN::MarchingCubes
- call_cl1()
: EMAN::Util
- CANG()
: EMAN::Util
- cb2sph()
: EMAN::ChaoProjector
- ccc_images()
: EMAN::Util
- ccc_images_G()
: EMAN::Util
- cconj()
: EMAN::EMData
- center_origin()
: EMAN::EMData
- center_origin_fft()
: EMAN::EMData
- center_origin_yz()
: EMAN::EMData
- center_to_zero()
: EMAN::PointArray
- change_filename_ext()
: EMAN::Util
- check_file_by_magic()
: EMAN::Util
- check_image()
: EMAN::TestUtil
- check_read_access()
: EMAN::ImageIO
- check_region()
: EMAN::ImageIO
- check_write_access()
: EMAN::ImageIO
- CircularMaskProcessor()
: EMAN::CircularMaskProcessor
- cl1()
: EMAN::Util
- ClampingProcessor()
: EMAN::ClampingProcessor
- classify()
: EMAN::BoxingTools
- CleanUpSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- clear()
: EMAN::PCA, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor, EMAN::CustomVector< type >, EMAN::Dict
- clear_min_max_vals()
: EMAN::MarchingCubes
- clearupdate()
: EMAN::EMData
- clip_inplace()
: EMAN::EMData
- ClipInplaceVariables()
: EMAN::EMData::ClipInplaceVariables
- cluster_equalsize()
: EMAN::Util
- cluster_pairwise()
: EMAN::Util
- cm_euc()
: EMAN::EMData
- cml_disc()
: EMAN::Util
- cml_init_rot()
: EMAN::Util
- cml_line_in3d()
: EMAN::Util
- cml_line_insino()
: EMAN::Util
- cml_line_insino_all()
: EMAN::Util
- cml_prepare_line()
: EMAN::Util
- cml_spin_psi()
: EMAN::Util
- cml_spin_psi_now()
: EMAN::Util
- cml_update_rot()
: EMAN::Util
- cml_weights()
: EMAN::Util
- cmp()
: EMAN::XYZCmp, EMAN::EMData, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp
- cmp1()
: EMAN::Util
- cmp2()
: EMAN::Util
- cmplx()
: EMAN::EMData
- cog()
: EMAN::EMData
- color_vertices()
: EMAN::MarchingCubes
- colored_rectangle()
: EMAN::GLUtil
- colorMappingByClassSize()
: EMAN::BoxSVDClassifier
- ColorRGBGenerator()
: EMAN::ColorRGBGenerator
- colreverse()
: EMAN::Util
- column()
: EMAN::Matrix4, EMAN::Matrix3
- common_lines()
: EMAN::EMData
- common_lines_real()
: EMAN::EMData
- components26()
: wustl_mm::SkeletonMaker::Volume
- components6()
: wustl_mm::SkeletonMaker::Volume
- compress_image_mask()
: EMAN::Util
- compute_1d()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_complex()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_real()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_missingwedge()
: EMAN::EMData
- conj()
: EMAN::Quaternion
- conjg()
: EMAN::EMData
- const_iterator()
: EMAN::Dict::const_iterator
- constrained_helix()
: EMAN::Util
- constrained_helix_test()
: EMAN::Util
- contour_isosurface()
: EMAN::GLUtil
- convolute()
: EMAN::EMData
- ConvolutionProcessor()
: EMAN::ConvolutionProcessor
- CoordinateProcessor()
: EMAN::CoordinateProcessor
- copy()
: EMAN::PointArray, EMAN::PDBReader, EMAN::EMData
- copy_empty_head()
: EMAN::EMData
- copy_exclude_keys()
: EMAN::Dict
- copy_exclusive_keys()
: EMAN::Dict
- copy_from()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- copy_head()
: EMAN::EMData
- copy_keys_in()
: EMAN::Dict
- copy_matrix_into_array()
: EMAN::Transform
- copy_relevant_params()
: EMAN::FactoryBase
- countExt()
: wustl_mm::SkeletonMaker::Volume
- countInt()
: wustl_mm::SkeletonMaker::Volume
- countIntEuler()
: wustl_mm::SkeletonMaker::Volume
- coveig()
: EMAN::Util
- coveig_for_py()
: EMAN::Util
- create_inverse()
: EMAN::Quaternion
- create_kernel()
: EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::AreaProcessor
- create_processor_image()
: EMAN::ImageProcessor
- create_radial_func()
: EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor
- Crosrng_e()
: EMAN::Util
- Crosrng_ew()
: EMAN::Util
- Crosrng_ms()
: EMAN::Util
- Crosrng_ms_delta()
: EMAN::Util
- Crosrng_msg()
: EMAN::Util
- Crosrng_msg_m()
: EMAN::Util
- Crosrng_msg_s()
: EMAN::Util
- Crosrng_msg_vec()
: EMAN::Util
- Crosrng_msg_vec_p()
: EMAN::Util
- Crosrng_ns()
: EMAN::Util
- Crosrng_psi()
: EMAN::Util
- Crosrng_sm_psi()
: EMAN::Util
- cross()
: EMAN::Vec3< Type >
- CSym()
: EMAN::CSym
- ctf2_rimg()
: EMAN::Util
- ctf_img()
: EMAN::Util
- ctf_rimg()
: EMAN::Util
- CtfCAutoAverager()
: EMAN::CtfCAutoAverager
- CtfCWautoAverager()
: EMAN::CtfCWautoAverager
- CUDA_Aligner()
: EMAN::CUDA_Aligner
- cuda_available()
: EMAN::EMUtil
- CUDA_multiref_aligner()
: EMAN::CUDA_multiref_aligner
- curveSkeleton()
: wustl_mm::SkeletonMaker::Volume
- curveSkeleton2D()
: wustl_mm::SkeletonMaker::Volume
- CustomVector()
: EMAN::CustomVector< type >
- cut_slice()
: EMAN::EMData
- cyclicshift()
: EMAN::Util
- d_ang()
: d_ang
- debug()
: EMAN::Log
- debug_print_parms()
: EMAN::EMData
- decimate()
: EMAN::Util
- del_attr()
: EMAN::EMData
- del_attr_dict()
: EMAN::EMData
- delete_au_planes()
: EMAN::Symmetry3D
- delete_disconnected_regions()
: EMAN::EMData
- depad()
: EMAN::EMData
- depad_corner()
: EMAN::EMData
- det2x2()
: EMAN::Matrix3
- detect_problem_keys()
: EMAN::Transform
- determinant()
: EMAN::Matrix3
- determine_slice_agreement()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- Df3IO()
: EMAN::Df3IO
- Dict()
: EMAN::Dict
- disorder2()
: EMAN::Util
- distanceFromOrigin()
: EMAN::Point3
- distanceFromOriginSquared()
: EMAN::Point3
- distanceTo()
: EMAN::Point3
- distanceToSquared()
: EMAN::Point3
- distmx()
: EMAN::PointArray
- div()
: EMAN::EMData
- div_filter()
: EMAN::Util
- div_img()
: EMAN::Util
- divkbsinh()
: EMAN::EMData
- divkbsinh_rect()
: EMAN::EMData
- divn_filter()
: EMAN::Util
- divn_img()
: EMAN::Util
- DM3IO()
: EMAN::DM3IO
- DM4IO()
: EMAN::DM4IO
- do_compare_slice_work()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- do_fft()
: EMAN::EMData
- do_fft_inplace()
: EMAN::EMData
- do_ift()
: EMAN::EMData
- do_ift_inplace()
: EMAN::EMData
- do_insert_slice_work()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- do_radon()
: EMAN::EMData
- DoGFourierProcessor()
: EMAN::DoGFourierProcessor
- dopca()
: EMAN::PCA
- dopca_lan()
: EMAN::PCA
- dopca_ooc()
: EMAN::PCA
- dot()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::EMData
- dot_rotate_translate()
: EMAN::EMData
- downsample()
: EMAN::EMData
- draw_cube()
: EMAN::MarchingCubes
- DSym()
: EMAN::DSym
- dump()
: EMAN::TypeDict, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- dump_dict()
: EMAN::EMUtil
- dump_emdata()
: EMAN::TestUtil
- dump_image_from_file()
: EMAN::TestUtil
- dump_table()
: EMAN::Util::KaiserBessel, KaiserBessel
- E2Exception()
: EMAN::E2Exception
- elem()
: EMAN::CustomVector< type >
- em_calloc()
: EMAN::EMUtil
- em_free()
: EMAN::EMUtil
- em_malloc()
: EMAN::EMUtil
- em_memcpy()
: EMAN::EMUtil
- em_memset()
: EMAN::EMUtil
- em_realloc()
: EMAN::EMUtil
- EMAN1Ctf()
: EMAN::EMAN1Ctf
- EMAN2Ctf()
: EMAN::EMAN2Ctf
- eman_copysign()
: EMAN::Util
- eman_erfc()
: EMAN::Util
- EmanOrientationGenerator()
: EMAN::EmanOrientationGenerator
- EMArray()
: EMAN::EMArray< T >
- EMCache()
: EMAN::EMCache< T >
- EMData()
: EMAN::EMData
- EMFourierFilter()
: EMAN::Processor
- EMFourierFilterFunc()
: EMAN::Processor
- EMFourierFilterInPlace()
: EMAN::Processor
- EMFTGL()
: EMAN::EMFTGL
- EMFTGLFontInstance()
: EMAN::EMFTGL::EMFTGLFontInstance
- EMFTGLManager()
: EMAN::EMFTGL::EMFTGLManager
- EmimIO()
: EMAN::EmimIO
- EmIO()
: EMAN::EmIO
- EMObject()
: EMAN::EMObject
- emobject_farray_to_py()
: EMAN::TestUtil
- emobject_strarray_to_py()
: EMAN::TestUtil
- emobject_to_py()
: EMAN::TestUtil
- emobject_transformarray_to_py()
: EMAN::TestUtil
- end()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Log, EMAN::Dict, EMAN::PawelProjector::IPCube
- ener()
: EMAN::Util
- ener_tot()
: EMAN::Util
- equal()
: EMAN::EMData, EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- equation_of_plane()
: EMAN::Util
- erase()
: EMAN::Dict
- erodeHelix()
: wustl_mm::SkeletonMaker::Volume
- erodeSheet()
: wustl_mm::SkeletonMaker::Volume
- error()
: EMAN::Log, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- eval()
: EMAN::Util
- even_angles()
: EMAN::Util
- EvenOrientationGenerator()
: EMAN::EvenOrientationGenerator
- exclude_numbers_io()
: EMAN::EMUtil
- explore()
: EMAN::Util
- explore2()
: EMAN::Util
- ExpProcessor()
: EMAN::ExpProcessor
- extract_box()
: EMAN::EMData
- extract_plane()
: EMAN::EMData
- extract_plane_rect()
: EMAN::EMData
- extract_plane_rect_fast()
: EMAN::EMData
- extractline()
: EMAN::EMData
- extractpoint()
: EMAN::EMData
- extractpoint2()
: EMAN::Util
- Factory()
: EMAN::Factory< T >
- FactoryBase()
: EMAN::FactoryBase
- FakeKaiserBessel()
: EMAN::Util::FakeKaiserBessel, FakeKaiserBessel
- fast_acos()
: EMAN::Util
- fast_exp()
: EMAN::Util
- fast_floor()
: EMAN::Util
- fast_get_image_type()
: EMAN::EMUtil
- fft_resample()
: EMAN::FFTResampleProcessor
- fft_shuffle()
: EMAN::EMData
- fftc_d()
: EMAN::Util
- fftc_q()
: EMAN::Util
- fftr_d()
: EMAN::Util
- fftr_q()
: EMAN::Util
- FH2F()
: EMAN::EMData
- FH2Real()
: EMAN::EMData
- file_lock_wait()
: EMAN::Util
- file_store()
: EMAN::file_store
- fill_nearby()
: EMAN::AutoMask3DProcessor
- filter_by_image()
: EMAN::EMData
- filter_stack()
: EMAN::CUDA_Aligner
- find()
: EMAN::Dict
- find_3d_threshold()
: EMAN::EMData
- find_max()
: EMAN::Util
- find_min_and_max()
: EMAN::Util
- find_pixels_with_value()
: EMAN::EMData
- find_radial_max()
: EMAN::BoxingTools
- find_region()
: EMAN::WatershedProcessor
- find_type()
: EMAN::TypeDict
- finish()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor, EMAN::XYZAverager, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- FiniteProcessor()
: EMAN::FiniteProcessor
- FitsIO()
: EMAN::FitsIO
- flip23()
: EMAN::Util
- flip_complex_phase()
: EMAN::Util
- flip_image()
: EMAN::Util
- FloatPoint()
: EMAN::FloatPoint
- FloatSize()
: EMAN::FloatSize
- flush()
: EMAN::ImageIO
- force_add()
: EMAN::Factory< T >
- Four_ds()
: EMAN::EMData
- Four_shuf_ds_cen_us()
: EMAN::EMData
- fourier_phaseshift180()
: EMAN::Phase180Processor
- fouriergridrot2d()
: EMAN::EMData
- fouriergridrot_shift2d()
: EMAN::EMData
- FourierInserter3DMode1()
: EMAN::FourierInserter3DMode1
- FourierInserter3DMode2()
: EMAN::FourierInserter3DMode2
- FourierInserter3DMode3()
: EMAN::FourierInserter3DMode3
- FourierInserter3DMode5()
: EMAN::FourierInserter3DMode5
- FourierInserter3DMode6()
: EMAN::FourierInserter3DMode6
- FourierInserter3DMode7()
: EMAN::FourierInserter3DMode7
- FourierInserter3DMode8()
: EMAN::FourierInserter3DMode8
- FourierPixelInserter3D()
: EMAN::FourierPixelInserter3D
- FourierPlaneReconstructor()
: EMAN::FourierPlaneReconstructor
- FourierReconstructor()
: EMAN::FourierReconstructor
- FourierReconstructorSimple2D()
: EMAN::FourierReconstructorSimple2D
- FourierWeightAverager()
: EMAN::FourierWeightAverager
- FourInterpol()
: EMAN::EMData
- FourTruncate()
: EMAN::EMData
- free_memory()
: EMAN::FourierPixelInserter3D, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::ReconstructorVolumeData, EMAN::EMData
- free_rdata()
: EMAN::EMData
- Frngs()
: EMAN::Util
- Frngs_inv()
: EMAN::Util
- from_dict()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- from_string()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- from_vector()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- fseek_to()
: EMAN::PifIO
- fwdpj3()
: EMAN::ChaoProjector
- Gatan2IO()
: EMAN::Gatan2IO
- GaussFFTProjector()
: EMAN::GaussFFTProjector
- Gaussian()
: EMAN::Util::Gaussian, Gaussian
- GaussianFunctoid()
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- gen_gl_texture()
: EMAN::GLUtil
- gen_glu_mipmaps()
: EMAN::GLUtil
- gen_orientations()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::Symmetry3D
- generate_machine_stamp()
: EMAN::MrcIO, EMAN::ImagicIO2
- generateRadialColorMap()
: EMAN::ColorRGBGenerator
- generatesubmax()
: EMAN::Util
- get()
: EMAN::Factory< T >, EMAN::Dict, EMAN::EMCache< T >
- get_2dcview()
: EMAN::EMData
- get_2dview()
: EMAN::EMData
- get_3dcview()
: EMAN::EMData
- get_3dcviewptr()
: EMAN::EMData
- get_3dview()
: EMAN::EMData
- get_all_attributes()
: EMAN::EMUtil
- get_amplitude_thres()
: EMAN::EMData
- get_array_offsets()
: EMAN::EMArray< T >, EMAN::EMData
- get_asym_unit_points()
: EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_asym_unit_triangles()
: EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_atomName()
: EMAN::PDBReader
- get_attr()
: EMAN::EMData
- get_attr_default()
: EMAN::EMData
- get_attr_dict()
: EMAN::EMData
- get_az_alignment_offset()
: EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::TetrahedralSym, EMAN::Symmetry3D
- get_az_delta()
: EMAN::EmanOrientationGenerator
- get_az_max()
: EMAN::OrientationGenerator
- get_background()
: EMAN::EMAN2Ctf
- get_bfactor()
: EMAN::EMAN1Ctf
- get_biggest_cluster()
: EMAN::Util
- get_bounding_box()
: EMAN::PointArray
- get_center()
: EMAN::PointArray
- get_changecount()
: EMAN::EMData
- get_ci()
: EMAN::Dict
- get_circle_mean()
: EMAN::EMData
- get_clip()
: EMAN::EMData
- get_clip_region()
: EMAN::IntTranslateProcessor
- get_col()
: EMAN::EMData
- get_color()
: EMAN::BoxingTools
- get_complex_at()
: EMAN::EMData
- get_complex_index()
: EMAN::EMData
- get_complex_index_fast()
: EMAN::EMData
- get_const_data()
: EMAN::EMData
- get_CTF()
: AlignOptions
- get_ctf()
: ctf_store_new, ctf_store, EMAN::EMData
- get_data()
: EMAN::CustomVector< type >, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_data_as_vector()
: EMAN::EMData
- get_data_pickle()
: EMAN::EMData
- get_datasettype_from_name()
: EMAN::VtkIO
- get_datatype()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_datatype_from_name()
: EMAN::VtkIO, EMAN::ImagicIO2, EMAN::ImagicIO
- get_datatype_size()
: EMAN::ImagicIO2, EMAN::ImagicIO
- get_datatype_string()
: EMAN::EMUtil
- get_debug_float()
: EMAN::TestUtil
- get_debug_image()
: EMAN::TestUtil
- get_debug_int()
: EMAN::TestUtil
- get_debug_string()
: EMAN::TestUtil
- get_debug_transform()
: EMAN::TestUtil
- get_defocus()
: EMAN::EMAN1Ctf
- get_delimiters()
: EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_depth()
: EMAN::Region, EMAN::EMFTGL
- get_desc()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::AreaProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::TypeDict, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_determinant()
: EMAN::Transform
- get_double()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_dtheta()
: AlignOptions
- get_edge_mean()
: EMAN::EMData
- get_edge_num()
: EMAN::MarchingCubes
- get_emdata()
: EMAN::ReconstructorVolumeData, wustl_mm::SkeletonMaker::VolumeData, wustl_mm::SkeletonMaker::Volume
- get_entry_id()
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- get_euler_names()
: EMAN::EMUtil
- get_face_size()
: EMAN::EMFTGL
- get_fft_amplitude()
: EMAN::EMData
- get_fft_amplitude2D()
: EMAN::EMData
- get_fft_phase()
: EMAN::EMData
- get_filename_ext()
: EMAN::Util
- get_first_ring()
: AlignOptions
- get_flags()
: EMAN::EMData
- get_float()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_font()
: EMAN::EMFTGL::EMFTGLManager, EMAN::EMFTGL::EMFTGLFontInstance
- get_font_file_name()
: EMAN::EMFTGL
- get_font_mode()
: EMAN::EMFTGL
- get_frand()
: EMAN::Util, EMAN::Randnum
- get_frand_pos()
: EMAN::Randnum
- get_gauss_rand()
: EMAN::Util, EMAN::Randnum
- get_gimx()
: EMAN::Interp
- get_golden_image()
: EMAN::TestUtil
- get_group_desc()
: EMAN::NewFourierProcessor, EMAN::TestImageProcessor, EMAN::NormalizeProcessor, EMAN::BoxStatProcessor, EMAN::ComplexPixelProcessor, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::ImageProcessor, EMAN::Processor
- get_have_angles()
: AlignOptions
- get_height()
: EMAN::Region
- get_hflip_transform()
: EMAN::Transform
- get_hyperg()
: EMAN::Interp
- get_image()
: EMAN::file_store, EMAN::newfile_store
- get_image_count()
: EMAN::EMUtil
- get_image_ext_type()
: EMAN::EMUtil
- get_image_type()
: EMAN::EMUtil
- get_imageio()
: EMAN::EMUtil, EMAN::GlobalCache
- get_imagetype_name()
: EMAN::EMUtil
- get_index()
: EMAN::ImageSort
- get_int()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_irand()
: EMAN::Util, EMAN::Randnum
- get_isosurface()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_isosurface_dl()
: EMAN::GLUtil
- get_kbi0_win()
: EMAN::Util::KaiserBessel, KaiserBessel
- get_kbsinh_win()
: EMAN::Util::KaiserBessel, KaiserBessel
- get_last_ring()
: AlignOptions
- get_line_from_string()
: EMAN::Util
- get_list()
: EMAN::Factory< T >
- get_machine_type()
: EMAN::EmIO
- get_mask3D()
: AlignOptions
- get_matrix()
: EMAN::Transform
- get_matrix3_row()
: EMAN::Transform
- get_matrix_4x4()
: EMAN::Transform
- get_max()
: EMAN::Util
- get_max_csym()
: EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_maxit()
: AlignOptions
- get_maxy()
: EMAN::XYData
- get_min()
: EMAN::Util
- get_min_delta_profile()
: EMAN::BoxingTools
- get_miny()
: EMAN::XYData
- get_mirror()
: EMAN::Transform
- get_mode_size()
: EMAN::VtkIO, EMAN::PifIO, EMAN::MrcIO, EMAN::FitsIO, EMAN::EmIO
- get_name()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_ndim()
: EMAN::Region, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMAN::EMData
- get_nimg()
: EMAN::SpiderIO, EMAN::SerIO, EMAN::XYZIO, EMAN::PifIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::EmimIO
- get_normal()
: EMAN::MarchingCubes
- get_nsym()
: EMAN::Transform, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_number_points()
: EMAN::PointArray, EMAN::PDBReader
- get_object_type_name()
: EMAN::EMObject
- get_offset()
: EMAN::MarchingCubes
- get_optimal_delta()
: EMAN::OrientationGenerator
- get_orientations_tally()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator
- get_origin()
: EMAN::Region
- get_param_types()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewFourierProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierPixelInserter3D, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeMaskProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::BeamstopProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::BoxStatProcessor, EMAN::AreaProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::ToZeroProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::LowpassAutoBProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_params()
: EMAN::Transform, EMAN::Projector, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::Analyzer, EMAN::Aligner
- get_params_inverse()
: EMAN::Transform
- get_path()
: EMAN::EMData
- get_pathnum()
: EMAN::EMData
- get_pixel_conv()
: EMAN::EMData
- get_pixel_conv7()
: EMAN::EMData
- get_pixel_conv_new()
: EMAN::Util
- get_pixel_conv_new_background()
: EMAN::Util
- get_pixel_filtered()
: EMAN::EMData
- get_pixel_value_by_dist1()
: EMAN::TestUtil
- get_pixel_value_by_dist2()
: EMAN::TestUtil
- get_point()
: EMAN::Pixel
- get_points()
: EMAN::PointArray, EMAN::PDBReader
- get_points_array()
: EMAN::PointArray, EMAN::PDBReader
- get_pow()
: EMAN::EMData
- get_pre_trans()
: EMAN::Transform
- get_pre_trans_2d()
: EMAN::Transform
- get_randnum_seed()
: EMAN::Util
- get_ref_angle_type()
: AlignOptions
- get_region_dims()
: EMAN::EMUtil
- get_region_origins()
: EMAN::EMUtil
- get_resName()
: EMAN::PDBReader
- get_resNum()
: EMAN::PDBReader
- get_ri()
: AlignOptions
- get_rotated_clip()
: EMAN::EMData
- get_rotation()
: EMAN::Transform
- get_rotation_transform()
: EMAN::Transform
- get_row()
: EMAN::EMData
- get_rstep()
: AlignOptions
- get_sampling()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sampling_range()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sB_size()
: EMAN::Util::sincBlackman, sincBlackman
- get_scale()
: EMAN::Transform, EMAN::OptVarianceCmp
- get_scale_and_mirror()
: EMAN::Transform
- get_score()
: EMAN::ImageSort
- get_seed()
: EMAN::Randnum
- get_shift()
: EMAN::OptVarianceCmp
- get_sigma()
: EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor
- get_sirt_lam()
: AlignOptions
- get_sirt_maxit()
: AlignOptions
- get_sirt_tol()
: AlignOptions
- get_size()
: EMAN::XYData, EMAN::UnevenMatrix, EMAN::Region, EMAN::EMData, EMAN::EMCache< T >
- get_slice()
: EMAN::Util
- get_snr()
: AlignOptions, EMAN::EMAN2Ctf
- get_start_val()
: EMAN::MinShrinkProcessor::LessThan, EMAN::MaxShrinkProcessor::GreaterThan
- get_stats()
: EMAN::Util
- get_stats_cstyle()
: EMAN::Util
- get_step()
: AlignOptions
- get_str_float()
: EMAN::Util
- get_str_int()
: EMAN::Util
- get_string()
: EMAN::Region, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_supp_pickle()
: EMAN::EMData
- get_surface_value()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sym()
: EMAN::Transform, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_sym_proj()
: EMAN::Transform
- get_symmetries()
: EMAN::Symmetry3D
- get_symmetry()
: AlignOptions
- get_syms()
: EMAN::Symmetry3D
- get_time_label()
: EMAN::Util
- get_top_half()
: EMAN::EMData
- get_touching_au_transforms()
: EMAN::Symmetry3D
- get_trans()
: EMAN::Transform
- get_trans_2d()
: EMAN::Transform
- get_transform()
: EMAN::EMData
- get_transform_params()
: EMAN::Util
- get_translation()
: EMAN::EMData
- get_type()
: EMAN::TypeDict, EMAN::EMObject
- get_type_string()
: EMAN::EMObject
- get_use_sirt()
: AlignOptions
- get_using_display_lists()
: EMAN::EMFTGL
- get_vals()
: EMAN::PCA
- get_value()
: EMAN::Pixel
- get_value_at()
: EMAN::PointArray, EMAN::EMData
- get_value_at_index()
: EMAN::EMData
- get_value_at_wrap()
: EMAN::EMData
- get_vecs()
: EMAN::PCA
- get_vector_at()
: EMAN::PointArray
- get_vflip_transform()
: EMAN::Transform
- get_width()
: EMAN::Region
- get_window_size()
: EMAN::Util::KaiserBessel::kbi0_win, EMAN::Util::KaiserBessel::kbsinh_win, EMAN::Util::KaiserBessel, KaiserBessel::kbi0_win, KaiserBessel::kbsinh_win, KaiserBessel
- get_x()
: EMAN::XYData, EMAN::PDBReader
- get_xlist()
: EMAN::XYData
- get_xmax()
: EMAN::UnevenMatrix
- get_xmin()
: EMAN::UnevenMatrix
- get_xoff()
: EMAN::EMData
- get_xrng()
: AlignOptions
- get_xsize()
: EMAN::EMArray< T >, EMAN::UnevenMatrix, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_y()
: EMAN::XYData, EMAN::PDBReader
- get_yatx()
: EMAN::XYData
- get_ylist()
: EMAN::XYData
- get_yoff()
: EMAN::EMData
- get_yrng()
: AlignOptions
- get_ysize()
: EMAN::EMArray< T >, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_z()
: EMAN::PDBReader
- get_zoff()
: EMAN::EMData
- get_zsize()
: EMAN::EMArray< T >, EMAN::EMData
- getBaldwinGridWeights()
: EMAN::Util
- getconvpt2d_kbi0()
: EMAN::EMData
- getDataAt()
: wustl_mm::SkeletonMaker::Volume
- GetDataAt()
: wustl_mm::SkeletonMaker::VolumeData
- getDistances()
: EMAN::BoxSVDClassifier
- getHead()
: wustl_mm::SkeletonMaker::GridQueue
- getIndex()
: wustl_mm::SkeletonMaker::Volume
- GetIndex()
: wustl_mm::SkeletonMaker::VolumeData
- getIterativeCluster()
: EMAN::BoxSVDClassifier
- GetJuCurveSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuSurfaceSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuThinning()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuTopologySkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- getLength()
: EMAN::PriorityQueue< ValueT, KeyT >
- getMapping()
: EMAN::BoxSVDClassifier
- GetMaxIndex()
: wustl_mm::SkeletonMaker::VolumeData
- getNeedToRecolor()
: EMAN::ColorRGBGenerator
- getNext()
: wustl_mm::SkeletonMaker::GridQueue2
- getnnz()
: EMAN::ChaoProjector
- getNumElements()
: wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- getNumNeighbor6()
: wustl_mm::SkeletonMaker::Volume
- getNumPotComplex()
: wustl_mm::SkeletonMaker::Volume
- getNumPotComplex2()
: wustl_mm::SkeletonMaker::Volume
- GetOrigin()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginX()
: wustl_mm::SkeletonMaker::Volume
- GetOriginX()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginY()
: wustl_mm::SkeletonMaker::Volume
- GetOriginY()
: wustl_mm::SkeletonMaker::VolumeData
- GetOriginZ()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginZ()
: wustl_mm::SkeletonMaker::Volume
- getRenderMinMax()
: EMAN::EMUtil
- getResolution()
: EMAN::EMData
- getRGBColor()
: EMAN::ColorRGBGenerator
- getRGBmode()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator
- GetSize()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeX()
: wustl_mm::SkeletonMaker::Volume
- GetSizeX()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeY()
: wustl_mm::SkeletonMaker::Volume
- GetSizeY()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeZ()
: wustl_mm::SkeletonMaker::Volume
- GetSizeZ()
: wustl_mm::SkeletonMaker::VolumeData
- GetSpacing()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingX()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingX()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingY()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingY()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingZ()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingZ()
: wustl_mm::SkeletonMaker::VolumeData
- getvec()
: EMAN::Util
- getVolumeData()
: wustl_mm::SkeletonMaker::Volume
- glDrawBoundingBox()
: EMAN::GLUtil
- glDrawDisk()
: EMAN::GLUtil
- glLoadMatrix()
: EMAN::GLUtil
- glMultMatrix()
: EMAN::GLUtil
- GlobalCache()
: EMAN::GlobalCache
- globalinit()
: EMAN::V4L2IO
- go()
: EMAN::BoxSVDClassifier
- goodf()
: EMAN::Util
- GridQueue()
: wustl_mm::SkeletonMaker::GridQueue
- GridQueue2()
: wustl_mm::SkeletonMaker::GridQueue2
- group_proj_by_phitheta()
: EMAN::Util
- I0table_maxerror()
: EMAN::Util::KaiserBessel, KaiserBessel
- i0win()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- i0win_tab()
: EMAN::Util::KaiserBessel, KaiserBessel
- icos_5_to_2()
: EMAN::Transform
- Icosahedral2Sym()
: EMAN::Icosahedral2Sym
- IcosahedralSym()
: EMAN::IcosahedralSym
- IcosIO()
: EMAN::IcosIO
- identity()
: EMAN::Matrix4, EMAN::Matrix3
- ifix()
: EMAN::ChaoProjector
- im_diff()
: EMAN::Util
- imag()
: EMAN::EMData, EMAN::point_t
- image_mutation()
: EMAN::Util
- ImageAverager()
: EMAN::ImageAverager
- ImageScore()
: EMAN::ImageScore
- ImageSort()
: EMAN::ImageSort
- ImagicIO()
: EMAN::ImagicIO
- ImagicIO2()
: EMAN::ImagicIO2
- in_which_asym_unit()
: EMAN::Symmetry3D
- index()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::ImageScore
- infomask()
: EMAN::Util
- init()
: EMAN::PlatonicSym, ctf_store_new, ctf_store, EMAN::FourierInserter3DMode8, EMAN::FourierPixelInserter3D, EMAN::ImageIO, EMAN::Factory< T >, EMAN::EMObject
- init_gimx()
: EMAN::Interp
- init_permissable_keys()
: EMAN::Transform
- init_test()
: EMAN::ImagicIO2
- initial_prune()
: EMAN::Util
- InitializeVolumeData()
: wustl_mm::SkeletonMaker::VolumeData
- insert_buffed_slice()
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- insert_clip()
: EMAN::EMData
- insert_hollow_ellipse()
: EMAN::TestTomoImage
- insert_image()
: EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- insert_images_list()
: EMAN::SVDAnalyzer, EMAN::Analyzer
- insert_padfft_slice()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- insert_params()
: EMAN::FactoryBase
- insert_pixel()
: EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::FourierPixelInserter3D
- insert_rect_slice()
: EMAN::EMData
- insert_rect_slice_ctf()
: EMAN::EMData
- insert_rect_slice_ctf_applied()
: EMAN::EMData
- insert_rectangle()
: EMAN::TestTomoImage
- insert_ref_image()
: EMAN::CUDA_multiref_aligner
- insert_scaled_sum()
: EMAN::EMData
- insert_slice()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor
- insert_solid_ellipse()
: EMAN::TestTomoImage
- inside_region()
: EMAN::Region
- Instance()
: EMAN::Randnum
- instance()
: EMAN::GlobalCache, EMAN::Log
- int2str()
: EMAN::Util
- interp_ft_3d()
: EMAN::GaussFFTProjector
- interpolate()
: EMAN::Quaternion
- IntPoint()
: EMAN::IntPoint
- IntSize()
: EMAN::IntSize
- inverse()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Transform, EMAN::Quaternion
- invert()
: EMAN::Transform
- is_c_sym()
: EMAN::CSym, EMAN::Symmetry3D
- is_complex()
: EMAN::EMData, EMAN::CoordinateProcessor
- is_complex_mode()
: EMAN::ImageIO
- is_complex_type()
: EMAN::EMUtil
- is_complex_x()
: EMAN::EMData
- is_d_sym()
: EMAN::DSym, EMAN::Symmetry3D
- is_data_big_endian()
: EMAN::ByteOrder
- is_fftodd()
: EMAN::EMData
- is_fftpadded()
: EMAN::EMData
- is_FH()
: EMAN::EMData
- is_file_exist()
: EMAN::Util
- is_flipped()
: EMAN::EMData
- is_float_big_endian()
: EMAN::ByteOrder
- is_float_int()
: EMAN::PifIO
- is_h_sym()
: EMAN::HSym, EMAN::Symmetry3D
- is_host_big_endian()
: EMAN::ByteOrder
- is_identity()
: EMAN::Transform
- is_image_big_endian()
: EMAN::ImageIO
- is_in_asym_unit()
: EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- is_local_maximum()
: EMAN::BoxingTools
- is_null()
: EMAN::EMObject
- is_platonic_sym()
: EMAN::PlatonicSym, EMAN::Symmetry3D
- is_real()
: EMAN::EMData
- is_region_in_box()
: EMAN::Region
- is_ri()
: EMAN::EMData, EMAN::MrcIO
- is_rot_identity()
: EMAN::Transform
- is_same_ctf()
: EMAN::EMUtil
- is_same_size()
: EMAN::EMUtil
- is_shuffled()
: EMAN::EMData
- is_single_image_format()
: EMAN::SingleSpiderIO, EMAN::SpiderIO, EMAN::PifIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::EmimIO
- is_tet_sym()
: EMAN::TetrahedralSym, EMAN::Symmetry3D
- is_valid()
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SingleSpiderIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- is_valid_filename()
: EMAN::EMUtil
- is_valid_spider()
: EMAN::SingleSpiderIO, EMAN::SpiderIO
- is_validx()
: EMAN::XYData
- isEmpty()
: EMAN::PriorityQueue< ValueT, KeyT >
- isFeatureFace()
: wustl_mm::SkeletonMaker::Volume
- isFull()
: EMAN::PriorityQueue< ValueT, KeyT >
- isHelixEnd()
: wustl_mm::SkeletonMaker::Volume
- Isosurface()
: EMAN::Isosurface
- isPiercable()
: wustl_mm::SkeletonMaker::Volume
- IsPower2()
: EMAN::Util
- isSheetEnd()
: wustl_mm::SkeletonMaker::Volume
- isSimple()
: wustl_mm::SkeletonMaker::Volume
- IterationAverager()
: EMAN::IterationAverager
- iterator()
: EMAN::Dict::iterator
- Lanczos()
: EMAN::PCA, EMAN::PCAlarge
- Lanczos_ooc()
: EMAN::PCA
- length()
: EMAN::Vector4, EMAN::Vector3, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, methodName
- lengthSquared()
: EMAN::Vector4, EMAN::Vector3, EMAN::ScreenVector
- linear_interpolate()
: EMAN::Util
- LinearRampProcessor()
: EMAN::LinearRampProcessor
- LinearXformProcessor()
: EMAN::LinearXformProcessor
- list_mutation()
: EMAN::Util
- little_big_dot()
: EMAN::EMData
- load_default_settings()
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- load_inserter()
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- loc()
: EMAN::Log, EMAN::PawelProjector::IPCube
- log()
: EMAN::EMData
- Log()
: EMAN::Log
- log10()
: EMAN::EMData
- log2()
: EMAN::PolarData
- LoGFourierProcessor()
: EMAN::LoGFourierProcessor
- logger()
: EMAN::Log
- lsfit()
: EMAN::Util
- LstFastIO()
: EMAN::LstFastIO
- LstIO()
: EMAN::LstIO
- mad_scalar()
: EMAN::Util
- madn_scalar()
: EMAN::Util
- make_footprint()
: EMAN::EMData
- make_header_host_endian()
: EMAN::ImagicIO2, EMAN::ImagicIO
- make_image_file()
: EMAN::TestUtil
- make_image_file2()
: EMAN::TestUtil
- make_image_file_by_mode()
: EMAN::TestUtil
- make_image_median()
: EMAN::EMUtil
- make_rotational_footprint()
: EMAN::EMData
- make_rotational_footprint_cmc()
: EMAN::EMData
- make_rotational_footprint_e1()
: EMAN::EMData
- makePointArray()
: EMAN::PDBReader
- marching_cube()
: EMAN::MarchingCubes
- MarchingCubes()
: EMAN::MarchingCubes
- markCellFace()
: wustl_mm::SkeletonMaker::Volume
- MarkSurfaces()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- mask()
: EMAN::PointArray, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer
- mask_asymmetric_unit()
: EMAN::PointArray
- mask_contig_region()
: EMAN::EMData
- MaskGaussNonuniformProcessor()
: EMAN::MaskGaussNonuniformProcessor
- MaskSharpProcessor()
: EMAN::MaskSharpProcessor
- match_points()
: EMAN::PointArray
- Matrix3()
: EMAN::Matrix3
- Matrix4()
: EMAN::Matrix4
- max_3D_pixel_error()
: EMAN::EMData
- mean()
: EMAN::Util, EMAN::SpiderIO::SpiderHeader, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::PifIO::PifImageHeader
- merge_peaks()
: EMAN::Util
- min_dist_four()
: EMAN::Util
- min_dist_real()
: EMAN::Util
- MinMaxAverager()
: EMAN::MinMaxAverager
- mono()
: EMAN::Util
- move_points()
: EMAN::Util
- MrcIO()
: EMAN::MrcIO
- mul_img()
: EMAN::Util
- mul_scalar()
: EMAN::Util
- muln_img()
: EMAN::Util
- mult()
: EMAN::EMData, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::ImageAverager, EMAN::Averager
- mult3()
: EMAN::CustomVector< type >
- mult_complex_efficient()
: EMAN::EMData
- mult_radial()
: EMAN::EMData
- mult_scalar()
: EMAN::Util
- multi_align_error()
: EMAN::Util
- multi_align_error_dfunc()
: EMAN::Util
- multi_align_error_func()
: EMAN::Util
- multi_align_error_func2()
: EMAN::Util
- multiref_ali2d()
: EMAN::CUDA_multiref_aligner
- multiref_peaks_ali2d()
: EMAN::Util
- multiref_peaks_compress_ali2d()
: EMAN::Util
- multiref_polar_ali_2d()
: EMAN::Util
- multiref_polar_ali_2d_delta()
: EMAN::Util
- multiref_polar_ali_2d_local()
: EMAN::Util
- multiref_polar_ali_2d_local_psi()
: EMAN::Util
- multiref_polar_ali_2d_nom()
: EMAN::Util
- multiref_polar_ali_2d_peaklist()
: EMAN::Util
- multiref_polar_ali_helical()
: EMAN::Util
- multiref_polar_ali_helical_90()
: EMAN::Util
- multiref_polar_ali_helical_90_local()
: EMAN::Util
- multiref_polar_ali_helical_local()
: EMAN::Util
- MUTEX_INIT()
: EMAN::Util
- MUTEX_LOCK()
: EMAN::Util
- MUTEX_UNLOCK()
: EMAN::Util
- mx_bbox()
: EMAN::GLUtil
- name()
: EMAN::_UnexpectedBehaviorException, EMAN::_BadAllocException, EMAN::_EmptyContainerException, EMAN::_InvalidParameterException, EMAN::_InvalidCallException, EMAN::_OutofRangeException, EMAN::_InvalidStringException, EMAN::_InvalidValueException, EMAN::_TypeException, EMAN::_NullPointerException, EMAN::_ImageWriteException, EMAN::_ImageReadException, EMAN::_FileAccessException, EMAN::_ImageDimensionException, EMAN::_ImageFormatException, EMAN::_NotExistingObjectException, EMAN::E2Exception, methodName, EMAN::EmimIO::EmimImageHeader, EMAN::EmimIO::EmimFileHeader, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- nearest_ang()
: EMAN::Util
- nearest_projected_points()
: EMAN::GLUtil
- nearestk_to_refdir()
: EMAN::Util
- need_swap()
: EMAN::SpiderIO
- negate()
: EMAN::Transform
- NEW()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner
- newfile_store()
: EMAN::newfile_store
- nint180()
: EMAN::Util
- nn()
: EMAN::EMData, EMAN::U3DWriter, EMAN::MarchingCubes
- nn4_ctf_rectReconstructor()
: EMAN::nn4_ctf_rectReconstructor
- nn4_ctfReconstructor()
: EMAN::nn4_ctfReconstructor
- nn4_rectReconstructor()
: EMAN::nn4_rectReconstructor
- nn4Reconstructor()
: EMAN::nn4Reconstructor
- nn_ctf()
: EMAN::EMData
- nn_ctf_applied()
: EMAN::EMData
- nn_SSNR()
: EMAN::EMData
- nn_SSNR_ctf()
: EMAN::EMData
- nnSSNR_ctfReconstructor()
: EMAN::nnSSNR_ctfReconstructor
- nnSSNR_Reconstructor()
: EMAN::nnSSNR_Reconstructor
- nonconvex()
: EMAN::Util
- norm()
: EMAN::Quaternion, EMAN::FourierPixelInserter3D
- norm_pad()
: EMAN::EMData
- normalize()
: EMAN::Vector4, EMAN::Vector3, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Quaternion, EMAN::RealPixelProcessor
- Normalize_ring()
: EMAN::Util
- normalize_threed()
: EMAN::ReconstructorVolumeData
- NSigmaClampingProcessor()
: EMAN::NSigmaClampingProcessor
- number_of_element()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- Numrinit()
: EMAN::PolarData
- OctahedralSym()
: EMAN::OctahedralSym
- OmapIO()
: EMAN::OmapIO
- oneDfftPolar()
: EMAN::EMData
- onelinenn()
: EMAN::EMData
- onelinenn_ctf()
: EMAN::EMData
- onelinenn_ctf_applied()
: EMAN::EMData
- onelinenn_mult()
: EMAN::EMData
- operator *()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Vector3, EMAN::ScreenVector
- operator *=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator bool()
: EMAN::EMObject
- operator const char *()
: EMAN::EMObject
- operator Ctf *()
: EMAN::EMObject
- operator double()
: EMAN::EMObject
- operator EMData *()
: EMAN::EMObject
- operator float()
: EMAN::EMObject
- operator float *()
: EMAN::EMObject
- operator int()
: EMAN::EMObject
- operator int *()
: EMAN::EMObject
- operator IntPoint()
: EMAN::FloatPoint
- operator short()
: EMAN::EMObject
- operator Transform *()
: EMAN::EMObject
- operator unsigned int()
: EMAN::EMObject
- operator vector()
: EMAN::Vec3< Type >, EMAN::FloatPoint, EMAN::FloatSize, EMAN::EMObject
- operator void *()
: EMAN::EMObject
- operator XYData *()
: EMAN::EMObject
- operator!=()
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::Dict, EMAN::EMObject
- operator()()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Util::Gaussian, EMAN::Util::KaiserBessel::kbi0_win, EMAN::Util::KaiserBessel::kbsinh_win, Gaussian, KaiserBessel::kbi0_win, KaiserBessel::kbsinh_win, ccf_value, assign_groups_comparator, cmpang, EMAN::EMArray< T >, EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid, EMAN::MinShrinkProcessor::LessThan, EMAN::MaxShrinkProcessor::GreaterThan, EMAN::EMData
- operator+()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- operator+=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator-()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- operator-=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator/()
: EMAN::Vector4, EMAN::Vector3
- operator/=()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator<()
: EMAN::XYData::Pair, d_ang
- operator=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D, EMAN::EMArray< T >, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::FourierPixelInserter3D, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::ReconstructorVolumeData, EMAN::Reconstructor, EMAN::PointArray, EMAN::PDBReader, EMAN::FloatPoint, EMAN::Dict::const_iterator, EMAN::Dict::iterator, EMAN::Dict, EMAN::EMObject, EMAN::EMData
- operator==()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::Dict, EMAN::EMObject, EMAN::EMData
- operator[]()
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Transform, EMAN::Reconstructor, EMAN::CustomVector< type >, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMAN::Dict, EMAN::TypeDict
- operator^()
: EMAN::Vector3
- opt_from_proj()
: EMAN::PointArray
- optimize_distances()
: EMAN::OptimumOrientationGenerator
- OptimumOrientationGenerator()
: EMAN::OptimumOrientationGenerator
- OptVarianceCmp()
: EMAN::OptVarianceCmp
- OrientationGenerator()
: EMAN::OrientationGenerator
- orthogonalize()
: EMAN::Transform
- pack_complex_to_real()
: EMAN::Util
- Pad()
: wustl_mm::SkeletonMaker::VolumeData
- pad()
: EMAN::Util, wustl_mm::SkeletonMaker::Volume, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader
- pad_corner()
: EMAN::EMData
- PaintProcessor()
: EMAN::PaintProcessor
- Pair()
: EMAN::XYData::Pair
- params_match()
: EMAN::EMFTGL::EMFTGLFontInstance
- PCAlarge()
: EMAN::PCAlarge
- PCAsmall()
: EMAN::PCAsmall
- pdb2mrc_by_nfft()
: EMAN::PointArray
- pdb2mrc_by_summation()
: EMAN::PointArray
- PDBReader()
: EMAN::PDBReader
- peak_ccf()
: EMAN::EMData
- peak_search()
: EMAN::EMData
- peakcmp()
: EMAN::EMData
- PerformPureJuSkeletonization()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PgmIO()
: EMAN::PgmIO
- phase()
: EMAN::EMData
- phase_cog()
: EMAN::EMData
- PifIO()
: EMAN::PifIO
- Pixel()
: EMAN::Pixel
- pixel_at()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- platonic_alt_lower_bound()
: EMAN::PlatonicSym
- PlatonicSym()
: EMAN::PlatonicSym
- Point3()
: EMAN::Point3
- point3d_t()
: point3d_t
- point_in_which_asym_unit()
: EMAN::Symmetry3D
- point_is_in_convex_polygon_2d()
: EMAN::Util
- point_is_in_triangle_2d()
: EMAN::Util
- PointArray()
: EMAN::PointArray
- Polar2D()
: EMAN::Util
- Polar2Dm()
: EMAN::Util
- Polar2Dmi()
: EMAN::Util
- PolarData()
: EMAN::PolarData
- popQueue()
: wustl_mm::SkeletonMaker::GridQueue
- power()
: EMAN::EMData
- prb1d()
: EMAN::Util
- predict()
: EMAN::Util
- prepcubes()
: EMAN::PawelProjector
- prepend()
: wustl_mm::SkeletonMaker::GridQueue2
- preprocess()
: EMAN::NewFourierProcessor, EMAN::TestImageProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor
- preprocess_slice()
: EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- preprocessandconvertpars()
: EMAN::NewFourierProcessor
- print()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- print_generator_type()
: EMAN::Randnum
- print_image()
: EMAN::EMData
- print_params()
: EMAN::Reconstructor
- printInfo()
: EMAN::EMObject
- printMatI3D()
: EMAN::Util
- printme()
: EMAN::Transform
- PriorityQueue()
: EMAN::PriorityQueue< ValueT, KeyT >
- process()
: EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::DirectionalSumProcessor, EMAN::TransposeProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::BooleanShrinkProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::Processor, EMAN::EMData
- process_ascii_region_io()
: EMAN::EMUtil
- process_dist_pixel()
: EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor
- process_inplace()
: EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::BooleanShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::BoxStatProcessor, EMAN::AreaProcessor, EMAN::ComplexPixelProcessor, EMAN::LinearPyramidProcessor, EMAN::CoordinateProcessor, EMAN::BinarizeFourierProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::RealPixelProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::ImageProcessor, EMAN::Processor, EMAN::XYZProcessor, EMAN::EMData
- process_lines_io()
: EMAN::EMUtil
- process_list_inplace()
: EMAN::Processor
- process_numbers_io()
: EMAN::EMUtil
- process_pixel()
: EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::BoxStatProcessor, EMAN::ZeroConstantProcessor, EMAN::AreaProcessor, EMAN::ComplexNormPixel, EMAN::ComplexPixelProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::RealPixelProcessor
- process_region_io()
: EMAN::EMUtil
- project()
: EMAN::EMData
- project3d()
: EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::XYZProjector
- projection_by_nfft()
: EMAN::PointArray
- projection_by_summation()
: EMAN::PointArray
- PruneCurves()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PruneSurfaces()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- push_back()
: EMAN::CustomVector< type >
- push_back_3()
: EMAN::CustomVector< type >
- pushQueue()
: wustl_mm::SkeletonMaker::GridQueue
- put()
: EMAN::Dict, EMAN::TypeDict
- pw_extract()
: EMAN::Util
- Radialize()
: EMAN::Util
- radprofile()
: EMAN::ModelHelixProcessor
- Randnum()
: EMAN::Randnum
- RandomOrientationGenerator()
: EMAN::RandomOrientationGenerator
- randomSeedCluster()
: EMAN::BoxSVDClassifier
- RangeThresholdProcessor()
: EMAN::RangeThresholdProcessor
- read()
: EMAN::newfile_store, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- read_any()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_array_data()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_array_types()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_binedimage()
: EMAN::EMData
- read_ctf()
: EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::FitsIO
- read_data()
: EMAN::ImageIO, EMAN::EMData
- read_data_element()
: EMAN::SerIO
- read_data_tag()
: EMAN::SerIO
- read_dataset()
: EMAN::VtkIO
- read_dim_arr()
: EMAN::SerIO
- read_fei_header()
: EMAN::MrcIO
- read_file()
: EMAN::XYData
- read_from_pdb()
: EMAN::PointArray, EMAN::PDBReader
- read_header()
: EMAN::ImageIO
- read_image()
: EMAN::EMData
- read_images()
: EMAN::EMData
- read_images_ext()
: EMAN::EMData
- read_mrc_header()
: EMAN::MrcIO
- read_native()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_string()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_struct_types()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- real()
: EMAN::Quaternion, EMAN::EMData, EMAN::point_t
- real2complex()
: EMAN::EMData
- real2FH()
: EMAN::EMData
- RealPixelProcessor()
: EMAN::RealPixelProcessor
- reclassify()
: EMAN::KMeansAnalyzer
- reconstitute_image_mask()
: EMAN::Util
- Reconstructor()
: EMAN::Reconstructor
- ReconstructorVolumeData()
: EMAN::ReconstructorVolumeData
- recv_broadcast()
: EMAN::Util
- reduce()
: EMAN::Symmetry3D
- Region()
: EMAN::Region
- remove()
: EMAN::PriorityQueue< ValueT, KeyT >, wustl_mm::SkeletonMaker::GridQueue2, EMAN::EMCache< T >
- remove_filename_ext()
: EMAN::Util
- render_amp24()
: EMAN::EMData
- render_amp8()
: EMAN::GLUtil, EMAN::EMData
- render_amp8_gl_texture()
: EMAN::GLUtil
- render_ap24()
: EMAN::EMData
- render_string()
: EMAN::EMFTGL
- render_using_VBOs()
: EMAN::GLUtil
- replace_amplitudes()
: EMAN::EMData
- replace_by_summation()
: EMAN::PointArray
- reseed()
: EMAN::KMeansAnalyzer
- reset()
: wustl_mm::SkeletonMaker::GridQueue2
- resize()
: EMAN::CustomVector< type >
- restart()
: EMAN::file_store, EMAN::newfile_store
- restrict1()
: EMAN::Util, EMAN::EMData
- restrict2()
: EMAN::EMData
- ri2ap()
: EMAN::EMData
- ri2inten()
: EMAN::EMData
- right_transform()
: EMAN::PointArray, EMAN::PDBReader
- ringwe()
: EMAN::PolarData
- rot_scale_conv()
: EMAN::EMData
- rot_scale_conv7()
: EMAN::EMData
- rot_scale_conv_new()
: EMAN::EMData
- rot_scale_conv_new_3D()
: EMAN::EMData
- rot_scale_conv_new_background()
: EMAN::EMData
- rot_scale_conv_new_background_3D()
: EMAN::EMData
- rot_scale_trans()
: EMAN::EMData
- rot_scale_trans2D()
: EMAN::EMData
- rot_scale_trans2D_background()
: EMAN::EMData
- rot_scale_trans_background()
: EMAN::EMData
- rotate()
: EMAN::Transform, EMAN::Quaternion, EMAN::EMData
- rotate_180()
: EMAN::EMData
- rotate_origin()
: EMAN::Transform
- rotate_origin_newBasis()
: EMAN::Transform
- rotate_phase_origin()
: EMAN::Util
- rotate_translate()
: EMAN::EMData
- rotate_x()
: EMAN::EMData
- RotateTranslateFlipScaleAligner()
: EMAN::RotateTranslateFlipScaleAligner
- RotateTranslateFlipScaleAlignerIterative()
: EMAN::RotateTranslateFlipScaleAlignerIterative
- RotateTranslateScaleAligner()
: EMAN::RotateTranslateScaleAligner
- RotateTranslateScaleAlignerIterative()
: EMAN::RotateTranslateScaleAlignerIterative
- rotation()
: EMAN::Matrix4
- rotationXYZtoUVW()
: EMAN::Matrix3
- rotavg()
: EMAN::EMData
- rotavg_i()
: EMAN::EMData
- round()
: EMAN::Util
- row()
: EMAN::Matrix4, EMAN::Matrix3
- SaffOrientationGenerator()
: EMAN::SaffOrientationGenerator
- SalIO()
: EMAN::SalIO
- sanitycheck()
: EMAN::Util
- save_byteorder_to_dict()
: EMAN::EMData
- save_data()
: EMAN::Util
- save_to_pdb()
: EMAN::PointArray, EMAN::PDBReader
- sbasename()
: EMAN::Util
- sBwin_tab()
: EMAN::Util::sincBlackman, sincBlackman
- scale()
: EMAN::Transform, EMAN::EMData, EMAN::SpiderIO::SpiderHeader, EMAN::LinearXformProcessor, EMAN::OmapIO::OmapHeader, EMAN::OptVarianceCmp
- scale_pixel()
: EMAN::EMData
- ScaleAlignerABS()
: EMAN::ScaleAlignerABS
- scaling()
: EMAN::Matrix4
- ScreenPoint()
: EMAN::ScreenPoint
- ScreenVector()
: EMAN::ScreenVector
- search2()
: EMAN::Util
- search_nearby()
: EMAN::AutoMask3DProcessor
- SerIO()
: EMAN::SerIO
- set()
: EMAN::Transform, EMAN::ImageSort
- set_array_offsets()
: EMAN::EMArray< T >, EMAN::EMData
- set_attr()
: EMAN::EMData
- set_attr_dict()
: EMAN::EMData
- set_attr_dict_explicit()
: EMAN::EMData
- set_attr_python()
: EMAN::EMData
- set_background()
: EMAN::EMAN2Ctf
- set_changecount()
: EMAN::EMData
- set_cmap_data()
: EMAN::ColorRGBGenerator
- set_col()
: EMAN::EMData
- set_complex()
: EMAN::EMData
- set_complex_at()
: EMAN::EMData
- set_complex_size()
: EMAN::EMData
- set_complex_x()
: EMAN::EMData
- set_ctf()
: EMAN::EMData
- set_CTF()
: AlignOptions
- set_data()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface, EMAN::EMData
- set_data_pickle()
: EMAN::EMData
- set_default()
: EMAN::Dict
- set_depth()
: EMAN::Region, EMAN::EMFTGL
- set_dtheta()
: AlignOptions
- set_endian()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_face_size()
: EMAN::EMFTGL
- set_fftodd()
: EMAN::EMData
- set_fftpad()
: EMAN::EMData
- set_FH()
: EMAN::EMData
- set_first_ring()
: AlignOptions
- set_flags()
: EMAN::EMData
- set_flipped()
: EMAN::EMData
- set_font_file_name()
: EMAN::EMFTGL
- set_font_mode()
: EMAN::EMFTGL
- set_from()
: EMAN::PointArray
- set_from_density_map()
: EMAN::PointArray
- set_have_angles()
: AlignOptions
- set_height()
: EMAN::Region
- set_last_ring()
: AlignOptions
- set_level()
: EMAN::Log
- set_line()
: EMAN::Util
- set_log_level()
: EMAN::Util
- set_logfile()
: EMAN::Log
- set_mask3D()
: AlignOptions
- set_matrix()
: EMAN::Transform
- set_maxit()
: AlignOptions
- set_mirror()
: EMAN::Transform
- set_mode()
: EMAN::BoxingTools
- set_number_points()
: EMAN::PointArray, EMAN::PDBReader
- set_nxc()
: EMAN::EMData
- set_origin()
: EMAN::Region
- set_param()
: EMAN::FactoryBase
- set_params()
: EMAN::Transform, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::PaintProcessor, EMAN::PeakOnlyProcessor, EMAN::AreaProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::RealPixelProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::Wiener2DFourierProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::Aligner
- set_params_inverse()
: EMAN::Transform
- set_path()
: EMAN::EMData
- set_pathnum()
: EMAN::EMData
- set_points_array()
: EMAN::PointArray, EMAN::PDBReader
- set_pre_trans()
: EMAN::Transform
- set_progname()
: EMAN::TestUtil
- set_radial_non_zero()
: EMAN::BoxingTools
- set_randnum_seed()
: EMAN::Util
- set_ref_angle_type()
: AlignOptions
- set_region()
: EMAN::BoxingTools
- set_ri()
: AlignOptions, EMAN::EMData
- set_rotation()
: EMAN::Transform, EMAN::EMData
- set_row()
: EMAN::EMData
- set_rstep()
: AlignOptions
- set_sampling()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_scale()
: EMAN::Transform
- set_seed()
: EMAN::Randnum
- set_shuffled()
: EMAN::EMData
- set_sirt_lam()
: AlignOptions
- set_sirt_maxit()
: AlignOptions
- set_sirt_tol()
: AlignOptions
- set_size()
: EMAN::XYData, EMAN::EMData
- set_snr()
: AlignOptions, EMAN::EMAN2Ctf
- set_step()
: AlignOptions
- set_supp_pickle()
: EMAN::EMData
- set_surface_value()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_symmetry()
: AlignOptions
- set_thumb_index()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_trans()
: EMAN::Transform
- set_translation()
: EMAN::EMData
- set_use_sirt()
: AlignOptions
- set_using_display_lists()
: EMAN::EMFTGL
- set_value()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- set_value_at()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::EMData
- set_value_at_fast()
: EMAN::EMData
- set_value_at_index()
: EMAN::EMData
- set_vector_at()
: EMAN::PointArray
- set_width()
: EMAN::Region
- set_x()
: EMAN::XYData
- set_xrng()
: AlignOptions
- set_xy_list()
: EMAN::XYData
- set_xyz_origin()
: EMAN::EMData
- set_xyzoff()
: EMAN::EMData
- set_y()
: EMAN::XYData
- set_yrng()
: AlignOptions
- setbutterworthdefaults()
: EMAN::NewFourierProcessor
- setCmapData()
: EMAN::MarchingCubes, EMAN::Isosurface
- setCmapMinMax()
: EMAN::MarchingCubes, EMAN::Isosurface
- SetDataAt()
: wustl_mm::SkeletonMaker::VolumeData
- setDataAt()
: wustl_mm::SkeletonMaker::Volume
- setDims()
: EMAN::BoxSVDClassifier
- setdm()
: EMAN::ChaoProjector
- setMinMax()
: EMAN::ColorRGBGenerator
- setNeedToRecolor()
: EMAN::ColorRGBGenerator
- SetOrigin()
: wustl_mm::SkeletonMaker::VolumeData
- setOrigin()
: EMAN::ColorRGBGenerator, wustl_mm::SkeletonMaker::Volume
- setRGBmode()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface
- setRGBorigin()
: EMAN::MarchingCubes, EMAN::Isosurface
- setRGBscale()
: EMAN::MarchingCubes, EMAN::Isosurface
- setScale()
: EMAN::ColorRGBGenerator
- SetSize()
: wustl_mm::SkeletonMaker::VolumeData
- setSpacing()
: wustl_mm::SkeletonMaker::Volume
- SetSpacing()
: wustl_mm::SkeletonMaker::VolumeData
- setup()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- setup4slice()
: EMAN::EMData
- setup_params()
: EMAN::CUDA_multiref_aligner
- setup_seed()
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- sfopen()
: EMAN::ImageIO
- sget_value_at()
: EMAN::EMData
- sget_value_at_interp()
: EMAN::EMData
- sgn()
: EMAN::Util
- shuffle_pad_corner()
: EMAN::EMData
- sincBlackman()
: EMAN::Util::sincBlackman, sincBlackman
- SingleSpiderIO()
: EMAN::SingleSpiderIO
- sinhwin()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- SitusIO()
: EMAN::SitusIO
- size()
: EMAN::ImageSort, EMAN::Dict, EMAN::TypeDict, EMAN::EMArray< T >, EMAN::CustomVector< type >, EMAN::Region, EMAN::EMCache< T >
- size_of_in_bytes()
: EMAN::U3DWriter
- skeleton()
: wustl_mm::SkeletonMaker::Volume
- slicereverse()
: EMAN::Util
- sort()
: wustl_mm::SkeletonMaker::GridQueue, EMAN::ImageSort
- sort_by_axis()
: EMAN::PointArray
- sort_mat()
: EMAN::Util
- sph2cb()
: EMAN::ChaoProjector
- SpiderIO()
: EMAN::SpiderIO
- spline()
: EMAN::Util
- spline_mat()
: EMAN::Util
- splint()
: EMAN::Util
- SqEuclideanCmp()
: EMAN::SqEuclideanCmp
- sqrt()
: EMAN::EMData
- square()
: EMAN::Util
- square_sum()
: EMAN::Util
- squared_length()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >
- sstrncmp()
: EMAN::Util
- static_get_param_types()
: EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner
- str_to_lower()
: EMAN::Util
- sub()
: EMAN::EMData, EMAN::MrcIO::FeiMrcHeader
- sub_fav()
: EMAN::Util
- sub_img()
: EMAN::Util
- subn_img()
: EMAN::Util
- subsquare()
: EMAN::EMData
- sum_oe()
: EMAN::CUDA_Aligner
- surface_face_z()
: EMAN::MarchingCubes
- surfaceSkeletonPres()
: wustl_mm::SkeletonMaker::Volume
- SVDAnalyzer()
: EMAN::SVDAnalyzer
- svdcmp()
: EMAN::Util
- swap()
: wustl_mm::SkeletonMaker::GridQueue2
- swap_bytes()
: EMAN::ByteOrder
- swap_central_slices_180()
: EMAN::Phase180Processor
- swap_corners_180()
: EMAN::Phase180Processor
- swap_data()
: EMAN::SpiderIO
- swap_header()
: EMAN::SpiderIO, EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO
- swapEle()
: wustl_mm::SkeletonMaker::GridQueue
- Symmetry3D()
: EMAN::Symmetry3D
- symplane0()
: EMAN::EMData
- symplane0_ctf()
: EMAN::EMData
- symplane0_rect()
: EMAN::EMData
- symplane1()
: EMAN::EMData
- symplane2()
: EMAN::EMData
- symvol()
: EMAN::EMData
- TagData()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- TagEntry()
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- TagGroup()
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- TagTable()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- test_dict()
: EMAN::TestUtil
- test_FloatPoint()
: EMAN::TestUtil
- test_FloatSize()
: EMAN::TestUtil
- test_IntPoint()
: EMAN::TestUtil
- test_IntSize()
: EMAN::TestUtil
- test_map_emobject()
: EMAN::TestUtil
- test_map_float()
: EMAN::TestUtil
- test_map_int()
: EMAN::TestUtil
- test_map_long()
: EMAN::TestUtil
- test_map_string()
: EMAN::TestUtil
- test_map_vecstring()
: EMAN::TestUtil
- test_type_sizes()
: EMAN::U3DWriter
- test_Vec3f()
: EMAN::TestUtil
- test_Vec3i()
: EMAN::TestUtil
- test_vector_emdata()
: EMAN::TestUtil
- test_vector_float()
: EMAN::TestUtil
- test_vector_int()
: EMAN::TestUtil
- test_vector_long()
: EMAN::TestUtil
- test_vector_pixel()
: EMAN::TestUtil
- test_vector_string()
: EMAN::TestUtil
- tet_3_to_2()
: EMAN::Transform
- TetrahedralSym()
: EMAN::TetrahedralSym
- tf()
: EMAN::Util, EMAN::TestUtil
- threshold()
: wustl_mm::SkeletonMaker::Volume
- to_angle()
: EMAN::Quaternion
- to_axis()
: EMAN::Quaternion
- to_dict()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_em_datatype()
: EMAN::VtkIO, EMAN::PifIO, EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO
- to_emobject()
: EMAN::TestUtil
- to_identity()
: EMAN::Transform
- to_matrix3()
: EMAN::Quaternion
- to_mrcmode()
: EMAN::MrcIO, EMAN::FitsIO
- to_one()
: EMAN::EMData
- to_pif_datatype()
: EMAN::PifIO
- to_str()
: EMAN::EMObject
- to_string()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_value()
: EMAN::EMData
- to_vector()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_zero()
: EMAN::EMData
- TomoAverager()
: EMAN::TomoAverager
- Transform()
: EMAN::Transform
- transform()
: EMAN::Transform, EMAN::TransformProcessor, EMAN::PointArray, EMAN::EMData
- translate()
: EMAN::Transform, EMAN::EMData
- translate_newBasis()
: EMAN::Transform
- translation()
: EMAN::Matrix4
- transpose()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Transform, EMAN::MrcIO
- transpose_inplace()
: EMAN::Transform
- trilinear_interpolate()
: EMAN::Util
- triquad()
: EMAN::Util
- trmsh3_()
: EMAN::Util
- twoD_fine_ali()
: EMAN::Util
- twoD_fine_ali_G()
: EMAN::Util
- twoD_fine_ali_SD()
: EMAN::Util
- twoD_fine_ali_SD_G()
: EMAN::Util
- twoD_to_3D_ali()
: EMAN::Util
- TwoDTestFunc()
: EMAN::Util
- TypeDict()
: EMAN::TypeDict
- typesize()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
Generated on Tue Jun 11 13:41:44 2013 for EMAN2 by
1.3.9.1