- SaffOrientationGenerator()
: EMAN::SaffOrientationGenerator
- SalIO()
: EMAN::SalIO
- sanitycheck()
: EMAN::Util
- save_byteorder_to_dict()
: EMAN::EMData
- save_data()
: EMAN::Util
- save_to_pdb()
: EMAN::PointArray, EMAN::PDBReader
- sbasename()
: EMAN::Util
- sBwin_tab()
: EMAN::Util::sincBlackman, sincBlackman
- scale()
: EMAN::Transform, EMAN::EMData, EMAN::SpiderIO::SpiderHeader, EMAN::LinearXformProcessor, EMAN::OmapIO::OmapHeader, EMAN::OptVarianceCmp
- scale_pixel()
: EMAN::EMData
- ScaleAlignerABS()
: EMAN::ScaleAlignerABS
- scaling()
: EMAN::Matrix4
- ScreenPoint()
: EMAN::ScreenPoint
- ScreenVector()
: EMAN::ScreenVector
- search2()
: EMAN::Util
- search_nearby()
: EMAN::AutoMask3DProcessor
- SerIO()
: EMAN::SerIO
- set()
: EMAN::Transform, EMAN::ImageSort
- set_array_offsets()
: EMAN::EMArray< T >, EMAN::EMData
- set_attr()
: EMAN::EMData
- set_attr_dict()
: EMAN::EMData
- set_attr_dict_explicit()
: EMAN::EMData
- set_attr_python()
: EMAN::EMData
- set_background()
: EMAN::EMAN2Ctf
- set_changecount()
: EMAN::EMData
- set_cmap_data()
: EMAN::ColorRGBGenerator
- set_col()
: EMAN::EMData
- set_complex()
: EMAN::EMData
- set_complex_at()
: EMAN::EMData
- set_complex_size()
: EMAN::EMData
- set_complex_x()
: EMAN::EMData
- set_CTF()
: AlignOptions
- set_ctf()
: EMAN::EMData
- set_data()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface, EMAN::EMData
- set_data_pickle()
: EMAN::EMData
- set_default()
: EMAN::Dict
- set_depth()
: EMAN::Region, EMAN::EMFTGL
- set_dtheta()
: AlignOptions
- set_endian()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_face_size()
: EMAN::EMFTGL
- set_fftodd()
: EMAN::EMData
- set_fftpad()
: EMAN::EMData
- set_FH()
: EMAN::EMData
- set_first_ring()
: AlignOptions
- set_flags()
: EMAN::EMData
- set_flipped()
: EMAN::EMData
- set_font_file_name()
: EMAN::EMFTGL
- set_font_mode()
: EMAN::EMFTGL
- set_from()
: EMAN::PointArray
- set_from_density_map()
: EMAN::PointArray
- set_have_angles()
: AlignOptions
- set_height()
: EMAN::Region
- set_last_ring()
: AlignOptions
- set_level()
: EMAN::Log
- set_line()
: EMAN::Util
- set_log_level()
: EMAN::Util
- set_logfile()
: EMAN::Log
- set_mask3D()
: AlignOptions
- set_matrix()
: EMAN::Transform
- set_maxit()
: AlignOptions
- set_mirror()
: EMAN::Transform
- set_mode()
: EMAN::BoxingTools
- set_number_points()
: EMAN::PointArray, EMAN::PDBReader
- set_nxc()
: EMAN::EMData
- set_origin()
: EMAN::Region
- set_param()
: EMAN::FactoryBase
- set_params()
: EMAN::Transform, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::PaintProcessor, EMAN::PeakOnlyProcessor, EMAN::AreaProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::RealPixelProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::Wiener2DFourierProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::Aligner
- set_params_inverse()
: EMAN::Transform
- set_path()
: EMAN::EMData
- set_pathnum()
: EMAN::EMData
- set_points_array()
: EMAN::PointArray, EMAN::PDBReader
- set_pre_trans()
: EMAN::Transform
- set_progname()
: EMAN::TestUtil
- set_radial_non_zero()
: EMAN::BoxingTools
- set_randnum_seed()
: EMAN::Util
- set_ref_angle_type()
: AlignOptions
- set_region()
: EMAN::BoxingTools
- set_ri()
: AlignOptions, EMAN::EMData
- set_rotation()
: EMAN::Transform, EMAN::EMData
- set_row()
: EMAN::EMData
- set_rstep()
: AlignOptions
- set_sampling()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_scale()
: EMAN::Transform
- set_seed()
: EMAN::Randnum
- set_shuffled()
: EMAN::EMData
- set_sirt_lam()
: AlignOptions
- set_sirt_maxit()
: AlignOptions
- set_sirt_tol()
: AlignOptions
- set_size()
: EMAN::XYData, EMAN::EMData
- set_snr()
: AlignOptions, EMAN::EMAN2Ctf
- set_step()
: AlignOptions
- set_supp_pickle()
: EMAN::EMData
- set_surface_value()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_symmetry()
: AlignOptions
- set_thumb_index()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_trans()
: EMAN::Transform
- set_translation()
: EMAN::EMData
- set_use_sirt()
: AlignOptions
- set_using_display_lists()
: EMAN::EMFTGL
- set_value()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- set_value_at()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::EMData
- set_value_at_fast()
: EMAN::EMData
- set_value_at_index()
: EMAN::EMData
- set_vector_at()
: EMAN::PointArray
- set_width()
: EMAN::Region
- set_x()
: EMAN::XYData
- set_xrng()
: AlignOptions
- set_xy_list()
: EMAN::XYData
- set_xyz_origin()
: EMAN::EMData
- set_xyzoff()
: EMAN::EMData
- set_y()
: EMAN::XYData
- set_yrng()
: AlignOptions
- setbutterworthdefaults()
: EMAN::NewFourierProcessor
- setCmapData()
: EMAN::MarchingCubes, EMAN::Isosurface
- setCmapMinMax()
: EMAN::MarchingCubes, EMAN::Isosurface
- SetDataAt()
: wustl_mm::SkeletonMaker::VolumeData
- setDataAt()
: wustl_mm::SkeletonMaker::Volume
- setDims()
: EMAN::BoxSVDClassifier
- setdm()
: EMAN::ChaoProjector
- setMinMax()
: EMAN::ColorRGBGenerator
- setNeedToRecolor()
: EMAN::ColorRGBGenerator
- SetOrigin()
: wustl_mm::SkeletonMaker::VolumeData
- setOrigin()
: EMAN::ColorRGBGenerator, wustl_mm::SkeletonMaker::Volume
- setRGBmode()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface
- setRGBorigin()
: EMAN::MarchingCubes, EMAN::Isosurface
- setRGBscale()
: EMAN::MarchingCubes, EMAN::Isosurface
- setScale()
: EMAN::ColorRGBGenerator
- SetSize()
: wustl_mm::SkeletonMaker::VolumeData
- setSpacing()
: wustl_mm::SkeletonMaker::Volume
- SetSpacing()
: wustl_mm::SkeletonMaker::VolumeData
- setup()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- setup4slice()
: EMAN::EMData
- setup_params()
: EMAN::CUDA_multiref_aligner
- setup_seed()
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- sfopen()
: EMAN::ImageIO
- sget_value_at()
: EMAN::EMData
- sget_value_at_interp()
: EMAN::EMData
- sgn()
: EMAN::Util
- shuffle_pad_corner()
: EMAN::EMData
- sincBlackman()
: EMAN::Util::sincBlackman, sincBlackman
- SingleSpiderIO()
: EMAN::SingleSpiderIO
- sinhwin()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- SitusIO()
: EMAN::SitusIO
- size()
: EMAN::ImageSort, EMAN::Dict, EMAN::TypeDict, EMAN::EMArray< T >, EMAN::CustomVector< type >, EMAN::Region, EMAN::EMCache< T >
- size_of_in_bytes()
: EMAN::U3DWriter
- skeleton()
: wustl_mm::SkeletonMaker::Volume
- slicereverse()
: EMAN::Util
- sort()
: wustl_mm::SkeletonMaker::GridQueue, EMAN::ImageSort
- sort_by_axis()
: EMAN::PointArray
- sort_mat()
: EMAN::Util
- sph2cb()
: EMAN::ChaoProjector
- SpiderIO()
: EMAN::SpiderIO
- spline()
: EMAN::Util
- spline_mat()
: EMAN::Util
- splint()
: EMAN::Util
- SqEuclideanCmp()
: EMAN::SqEuclideanCmp
- sqrt()
: EMAN::EMData
- square()
: EMAN::Util
- square_sum()
: EMAN::Util
- squared_length()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >
- sstrncmp()
: EMAN::Util
- static_get_param_types()
: EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner
- str_to_lower()
: EMAN::Util
- sub()
: EMAN::EMData, EMAN::MrcIO::FeiMrcHeader
- sub_fav()
: EMAN::Util
- sub_img()
: EMAN::Util
- subn_img()
: EMAN::Util
- subsquare()
: EMAN::EMData
- sum_oe()
: EMAN::CUDA_Aligner
- surface_face_z()
: EMAN::MarchingCubes
- surfaceSkeletonPres()
: wustl_mm::SkeletonMaker::Volume
- SVDAnalyzer()
: EMAN::SVDAnalyzer
- svdcmp()
: EMAN::Util
- swap()
: wustl_mm::SkeletonMaker::GridQueue2
- swap_bytes()
: EMAN::ByteOrder
- swap_central_slices_180()
: EMAN::Phase180Processor
- swap_corners_180()
: EMAN::Phase180Processor
- swap_data()
: EMAN::SpiderIO
- swap_header()
: EMAN::SpiderIO, EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO
- swapEle()
: wustl_mm::SkeletonMaker::GridQueue
- Symmetry3D()
: EMAN::Symmetry3D
- symplane0()
: EMAN::EMData
- symplane0_ctf()
: EMAN::EMData
- symplane0_rect()
: EMAN::EMData
- symplane1()
: EMAN::EMData
- symplane2()
: EMAN::EMData
- symvol()
: EMAN::EMData
Generated on Tue Jun 11 12:42:13 2013 for EMAN2 by
1.4.7