#include <aligner.h>
Inheritance diagram for EMAN::RotateFlipAlignerIterative:
Public Member Functions | |
virtual EMData * | align (EMData *this_img, EMData *to_img, const string &cmp_name="dot", const Dict &cmp_params=Dict()) const |
To align 'this_img' with another image passed in through its parameters. | |
virtual EMData * | align (EMData *this_img, EMData *to_img) const |
virtual string | get_name () const |
Get the Aligner's name. | |
virtual string | get_desc () const |
virtual TypeDict | get_param_types () const |
Static Public Member Functions | |
static Aligner * | NEW () |
static TypeDict | static_get_param_types () |
Static Public Attributes | |
static const string | NAME = "rotate_flip_iterative" |
r1 | inner ring | |
r2 | outer ring |
Definition at line 766 of file aligner.h.
virtual EMData* EMAN::RotateFlipAlignerIterative::align | ( | EMData * | this_img, | |
EMData * | to_img | |||
) | const [inline, virtual] |
Implements EMAN::Aligner.
Definition at line 771 of file aligner.h.
References align().
00772 { 00773 return align(this_img, to_img, "dot", Dict()); 00774 }
EMData * RotateFlipAlignerIterative::align | ( | EMData * | this_img, | |
EMData * | to_img, | |||
const string & | cmp_name = "dot" , |
|||
const Dict & | cmp_params = Dict() | |||
) | const [virtual] |
To align 'this_img' with another image passed in through its parameters.
The alignment uses a user-given comparison method to compare the two images. If none is given, a default one is used.
this_img | The image to be compared. | |
to_img | 'this_img" is aligned with 'to_img'. | |
cmp_name | The comparison method to compare the two images. | |
cmp_params | The parameter dictionary for comparison method. |
Implements EMAN::Aligner.
Definition at line 1058 of file aligner.cpp.
References EMAN::EMData::align(), EMAN::EMData::cmp(), cmp1(), cmp2(), EMAN::EMData::get_attr(), EMAN::Aligner::params, EMAN::EMData::process(), EMAN::EMData::process_inplace(), EMAN::EMData::set_attr(), EMAN::Dict::set_default(), and t.
Referenced by align().
01060 { 01061 Dict rot_params("r1",params.set_default("r1",-1),"r2",params.set_default("r2",-1)); 01062 EMData * r1 = this_img->align("rotational_iterative", to, rot_params,cmp_name, cmp_params); 01063 01064 EMData * flipped =to->process("xform.flip", Dict("axis", "x")); 01065 EMData * r2 = this_img->align("rotational_iterative", flipped,rot_params, cmp_name, cmp_params); 01066 Transform* t = r2->get_attr("xform.align2d"); 01067 t->set_mirror(true); 01068 r2->set_attr("xform.align2d",t); 01069 delete t; 01070 01071 float cmp1 = r1->cmp(cmp_name, to, cmp_params); 01072 float cmp2 = r2->cmp(cmp_name, flipped, cmp_params); 01073 01074 delete flipped; flipped = 0; 01075 01076 EMData *result = 0; 01077 01078 if (cmp1 < cmp2) { 01079 if( r2 ) 01080 { 01081 delete r2; 01082 r2 = 0; 01083 } 01084 result = r1; 01085 } 01086 else { 01087 if( r1 ) 01088 { 01089 delete r1; 01090 r1 = 0; 01091 } 01092 result = r2; 01093 result->process_inplace("xform.flip",Dict("axis","x")); 01094 } 01095 01096 return result; 01097 }
virtual string EMAN::RotateFlipAlignerIterative::get_desc | ( | ) | const [inline, virtual] |
Implements EMAN::Aligner.
Definition at line 780 of file aligner.h.
00781 { 00782 return "Performs two rotational alignments, iterative style, one using the original image and one using the hand-flipped image. Decides which alignment is better using a comparitor and returns it"; 00783 }
virtual string EMAN::RotateFlipAlignerIterative::get_name | ( | ) | const [inline, virtual] |
virtual TypeDict EMAN::RotateFlipAlignerIterative::get_param_types | ( | ) | const [inline, virtual] |
Implements EMAN::Aligner.
Definition at line 790 of file aligner.h.
References static_get_param_types().
00791 { 00792 return static_get_param_types(); 00793 }
static Aligner* EMAN::RotateFlipAlignerIterative::NEW | ( | ) | [inline, static] |
static TypeDict EMAN::RotateFlipAlignerIterative::static_get_param_types | ( | ) | [inline, static] |
Definition at line 795 of file aligner.h.
References EMAN::EMObject::INT, and EMAN::TypeDict::put().
Referenced by get_param_types().
00795 { 00796 TypeDict d; 00797 d.put("r1", EMObject::INT, "Inner ring, pixels"); 00798 d.put("r2", EMObject::INT, "Outer ring, pixels"); 00799 return d; 00800 }
const string RotateFlipAlignerIterative::NAME = "rotate_flip_iterative" [static] |