Here is a list of all class members with links to the classes they belong to:
- cache_au_planes()
: EMAN::Symmetry3D
- cache_size
: EMAN::Symmetry3D
- cached_au_planes
: EMAN::Symmetry3D
- calc_amp1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_amplitude()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_az_dist()
: EMAN::EMData
- calc_bessel()
: EMAN::Util
- calc_best_fft_size()
: EMAN::Util
- calc_bilinear_least_square()
: EMAN::Util
- calc_ccf()
: EMAN::EMData
- calc_ccfx()
: EMAN::EMData
- calc_center_density()
: EMAN::EMData
- calc_center_of_mass()
: EMAN::EMData
- calc_correlation()
: EMAN::XYData
- calc_ctf1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_dist()
: EMAN::EMData
- calc_fast_sigma_image()
: EMAN::EMData
- calc_flcf()
: EMAN::EMData
- calc_fourier_shell_correlation()
: EMAN::EMData
- calc_g1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_g2()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_gamma()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_highest_locations()
: EMAN::EMData
- calc_hist()
: EMAN::EMData
- calc_lambda()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_least_square_fit()
: EMAN::Util
- calc_locals()
: EMAN::MaskGaussInvProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor
- calc_max_index()
: EMAN::EMData
- calc_max_location()
: EMAN::EMData
- calc_max_location_wrap()
: EMAN::EMData
- calc_max_location_wrap_intp()
: EMAN::EMData
- calc_mean()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_min_index()
: EMAN::EMData
- calc_min_location()
: EMAN::EMData
- calc_mutual_correlation()
: EMAN::EMData
- calc_n_highest_locations()
: EMAN::EMData
- calc_noise()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_radial_dist()
: EMAN::EMData
- calc_ref_image_index()
: EMAN::LstIO, EMAN::LstFastIO
- calc_sigma()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_sigma_diff()
: EMAN::EMData
- calc_snr()
: EMAN::EMAN1Ctf
- calcsigmamean
: EMAN::KMeansAnalyzer
- calculate_min_max_vals()
: EMAN::MarchingCubes
- calculate_surface()
: EMAN::MarchingCubes
- call_cl1()
: EMAN::Util
- CANG()
: EMAN::Util
- cb2sph()
: EMAN::ChaoProjector
- cc
: EMAN::MarchingCubes
- ccc
: EMAN::ImagicIO2::Imagic4D
- ccc3d
: EMAN::ImagicIO2::Imagic4D
- ccc_images()
: EMAN::Util
- ccc_images_G()
: EMAN::Util
- ccf
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- cconj()
: EMAN::EMData
- cell_alpha
: EMAN::XplorIO
- cell_beta
: EMAN::XplorIO
- cell_gama
: EMAN::XplorIO
- cella1
: EMAN::ImagicIO::ImagicHeader
- cella2
: EMAN::ImagicIO::ImagicHeader
- cellx
: EMAN::ImagicIO::ImagicHeader
- celly
: EMAN::ImagicIO::ImagicHeader
- cellz
: EMAN::ImagicIO::ImagicHeader
- center_origin()
: EMAN::EMData
- center_origin_fft()
: EMAN::EMData
- center_origin_yz()
: EMAN::EMData
- center_to_zero()
: EMAN::PointArray
- centers
: EMAN::KMeansAnalyzer
- chainId
: EMAN::PDBReader
- change_filename_ext()
: EMAN::Util
- changecount
: EMAN::EMData
- CHAR
: EMAN::VtkIO, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- check_file_by_magic()
: EMAN::Util
- check_image()
: EMAN::TestUtil
- check_read_access()
: EMAN::ImageIO
- check_region()
: EMAN::ImageIO
- check_write_access()
: EMAN::ImageIO
- ciend
: cilist
- cierr
: cilist
- cifmt
: cilist
- CircularMaskProcessor()
: EMAN::CircularMaskProcessor
- cirec
: cilist
- cit
: EMAN::Symmetry3D
- ciunit
: cilist
- cl1()
: EMAN::Util
- ClampingProcessor()
: EMAN::ClampingProcessor
- classify()
: EMAN::BoxingTools
- classno
: EMAN::ImagicIO2::Imagic4D
- CleanUpSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- clear()
: EMAN::PCA, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor, EMAN::CustomVector< type >, EMAN::Dict
- clear_min_max_vals()
: EMAN::MarchingCubes
- clearupdate()
: EMAN::EMData
- clip_inplace()
: EMAN::EMData
- ClipInplaceVariables()
: EMAN::EMData::ClipInplaceVariables
- clipnum
: EMAN::EmimIO::EmimImageHeader
- cluster_equalsize()
: EMAN::Util
- cluster_pairwise()
: EMAN::Util
- cm_euc()
: EMAN::EMData
- cmap
: EMAN::ColorRGBGenerator
- cml_disc()
: EMAN::Util
- cml_init_rot()
: EMAN::Util
- cml_line_in3d()
: EMAN::Util
- cml_line_insino()
: EMAN::Util
- cml_line_insino_all()
: EMAN::Util
- cml_prepare_line()
: EMAN::Util
- cml_spin_psi()
: EMAN::Util
- cml_spin_psi_now()
: EMAN::Util
- cml_update_rot()
: EMAN::Util
- cml_weights()
: EMAN::Util
- cmp()
: EMAN::XYZCmp, EMAN::EMData, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp
- cmp1()
: EMAN::Util
- cmp2()
: EMAN::Util
- cmplx()
: EMAN::EMData
- CmpMode
: EMAN::BoxingTools
- cmtotvar
: EMAN::ImagicIO2::Imagic4D
- cog()
: EMAN::EMData
- color_vertices()
: EMAN::MarchingCubes
- colored_rectangle()
: EMAN::GLUtil
- colormap
: EMAN::ColorRGBGenerator
- colorMappingByClassSize()
: EMAN::BoxSVDClassifier
- ColorRGBGenerator()
: EMAN::ColorRGBGenerator
- colors
: EMAN::BoxingTools
- colreverse()
: EMAN::Util
- column()
: EMAN::Matrix4, EMAN::Matrix3
- comment
: EMAN::EmIO::EMHeader
- common_lines()
: EMAN::EMData
- common_lines_real()
: EMAN::EMData
- complex
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- COMPLEX16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- COMPLEX8_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- components26()
: wustl_mm::SkeletonMaker::Volume
- components6()
: wustl_mm::SkeletonMaker::Volume
- compress_image_mask()
: EMAN::Util
- compute_1d()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_complex()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_real()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_missingwedge()
: EMAN::EMData
- conj()
: EMAN::Quaternion
- conjg()
: EMAN::EMData
- const_iterator()
: EMAN::Dict::const_iterator
- constrained_helix()
: EMAN::Util
- constrained_helix_test()
: EMAN::Util
- contour_isosurface()
: EMAN::GLUtil
- convolute()
: EMAN::EMData
- ConvolutionProcessor()
: EMAN::ConvolutionProcessor
- CoordinateProcessor()
: EMAN::CoordinateProcessor
- coosmsa
: EMAN::ImagicIO2::Imagic4D
- copy()
: EMAN::PointArray, EMAN::PDBReader, EMAN::EMData
- copy_empty_head()
: EMAN::EMData
- copy_exclude_keys()
: EMAN::Dict
- copy_exclusive_keys()
: EMAN::Dict
- copy_from()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- copy_head()
: EMAN::EMData
- copy_keys_in()
: EMAN::Dict
- copy_matrix_into_array()
: EMAN::Transform
- copy_relevant_params()
: EMAN::FactoryBase
- count
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::EmimIO::EmimFileHeader
- count_stop
: EMAN::PDBReader
- countExt()
: wustl_mm::SkeletonMaker::Volume
- countInt()
: wustl_mm::SkeletonMaker::Volume
- countIntEuler()
: wustl_mm::SkeletonMaker::Volume
- coveig()
: EMAN::Util
- coveig_for_py()
: EMAN::Util
- covmat
: EMAN::PCAsmall
- create_inverse()
: EMAN::Quaternion
- create_kernel()
: EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::AreaProcessor
- create_processor_image()
: EMAN::ImageProcessor
- create_radial_func()
: EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor
- Crosrng_e()
: EMAN::Util
- Crosrng_ew()
: EMAN::Util
- Crosrng_ms()
: EMAN::Util
- Crosrng_ms_delta()
: EMAN::Util
- Crosrng_msg()
: EMAN::Util
- Crosrng_msg_m()
: EMAN::Util
- Crosrng_msg_s()
: EMAN::Util
- Crosrng_msg_vec()
: EMAN::Util
- Crosrng_msg_vec_p()
: EMAN::Util
- Crosrng_ns()
: EMAN::Util
- Crosrng_psi()
: EMAN::Util
- Crosrng_sm_psi()
: EMAN::Util
- cross()
: EMAN::Vec3< Type >
- cs
: EMAN::Ctf
- CSym()
: EMAN::CSym
- CTF
: AlignOptions, EMAN::EMObject, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ctf
: EMAN::Wiener2DFourierProcessor
- ctf2
: EMAN::point_t
- ctf2_rimg()
: EMAN::Util
- CTF_
: EMAN::Processor
- ctf_a0
: EMAN::PifIO::PifFileHeader
- ctf_a1
: EMAN::PifIO::PifFileHeader
- ctf_a2
: EMAN::PifIO::PifFileHeader
- ctf_a3
: EMAN::PifIO::PifFileHeader
- ctf_a4
: EMAN::PifIO::PifFileHeader
- ctf_a5
: EMAN::PifIO::PifFileHeader
- CTF_AMP
: EMAN::Ctf
- CTF_BACKGROUND
: EMAN::Ctf
- ctf_img()
: EMAN::Util
- CTF_MAGIC
: EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO
- ctf_params
: EMAN::CUDA_multiref_aligner
- ctf_rimg()
: EMAN::Util
- CTF_SIGN
: EMAN::Ctf
- CTF_SNR
: EMAN::Ctf
- CTF_SNR_SMOOTH
: EMAN::Ctf
- CTF_TOTAL
: EMAN::Ctf
- CTF_WIENER_FILTER
: EMAN::Ctf
- CtfCAutoAverager()
: EMAN::CtfCAutoAverager
- CtfCWautoAverager()
: EMAN::CtfCWautoAverager
- CTFOS
: EMAN::Ctf
- CtfType
: EMAN::Ctf
- CUDA_Aligner()
: EMAN::CUDA_Aligner
- cuda_available()
: EMAN::EMUtil
- CUDA_multiref_aligner()
: EMAN::CUDA_multiref_aligner
- cur
: wustl_mm::SkeletonMaker::GridQueue2
- cur_h
: EMAN::SpiderIO
- curveRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- curveSkeleton()
: wustl_mm::SkeletonMaker::Volume
- curveSkeleton2D()
: wustl_mm::SkeletonMaker::Volume
- CustomVector()
: EMAN::CustomVector< type >
- cut_slice()
: EMAN::EMData
- cyclicshift()
: EMAN::Util
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