pca.cpp File Reference

#include "emdata.h"
#include "util.h"
#include "emutil.h"
#include "pca.h"
#include "lapackblas.h"

Include dependency graph for pca.cpp:

Go to the source code of this file.

Defines

#define qmat(i, j)   qmat[((j)-1)*kstep + (i) -1]
#define diag(i)   diag[(i)-1]
#define TOL   1e-7
#define V(i, j)   V[((j)-1)*imgsize + (i) - 1]
#define v0(i)   v0[(i)-1]
#define Av(i)   Av[(i)-1]
#define subdiag(i)   subdiag[(i)-1]
#define diag(i)   diag[(i)-1]
#define hvec(i)   hvec[(i)-1]
#define TOL   1e-7
#define v(i)   v[(i) - 1]
#define resid(i)   resid[(i) - 1]
#define Av(i)   Av[(i)-1]
#define subdiag(i)   subdiag[(i)-1]
#define diag(i)   diag[(i)-1]


Define Documentation

#define Av (  )     Av[(i)-1]

Definition at line 447 of file pca.cpp.

#define Av (  )     Av[(i)-1]

Definition at line 447 of file pca.cpp.

#define diag (  )     diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define diag (  )     diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define diag (  )     diag[(i)-1]

Definition at line 449 of file pca.cpp.

#define hvec (  )     hvec[(i)-1]

Definition at line 293 of file pca.cpp.

#define qmat ( i,
 )     qmat[((j)-1)*kstep + (i) -1]

Definition at line 104 of file pca.cpp.

#define resid (  )     resid[(i) - 1]

Definition at line 446 of file pca.cpp.

Referenced by EMAN::PCA::Lanczos_ooc().

#define subdiag (  )     subdiag[(i)-1]

Definition at line 448 of file pca.cpp.

#define subdiag (  )     subdiag[(i)-1]

Definition at line 448 of file pca.cpp.

#define TOL   1e-7

Definition at line 444 of file pca.cpp.

#define TOL   1e-7

Definition at line 444 of file pca.cpp.

#define v (  )     v[(i) - 1]

Definition at line 445 of file pca.cpp.

Referenced by EMAN::FourierWeightAverager::add_image(), EMAN::RTFSlowExhaustiveAligner::align(), ang_diff(), EMAN::Vector4::approxEqual(), EMAN::Vector3::approxEqual(), wustl_mm::GraySkeletonCPP::VolumeSkeletonizer::Are26Neighbors(), EMAN::Vec2< Type >::as_list(), EMAN::Vec3< Type >::as_list(), EMAN::Quaternion::as_list(), EMAN::EMAN2Ctf::calc_amplitude(), EMAN::EMAN1Ctf::calc_amplitude(), EMAN::EMData::calc_highest_locations(), EMAN::EMData::calc_n_highest_locations(), EMAN::EMData::calc_radial_dist(), cmprlb_(), EMAN::EMAN2Ctf::compute_2d_complex(), EMAN::EMAN1Ctf::compute_2d_complex(), EMAN::EMData::compute_missingwedge(), EMAN::cross(), EMAN::Vec3< Type >::cross(), wustl_mm::SkeletonMaker::Volume::curveSkeleton(), EMAN::EMData::cut_slice(), EMAN::dot(), EMAN::Vec2< Type >::dot(), EMAN::Vec3< Type >::dot(), EMAN::Processor::EMFourierFilterFunc(), EMAN::TestUtil::emobject_farray_to_py(), EMAN::TestUtil::emobject_strarray_to_py(), EMAN::TestUtil::emobject_transformarray_to_py(), EMAN::EMData::extract_box(), EMAN::EMAN2Ctf::from_string(), GCVmin_Tik(), EMAN::EMUtil::get_all_attributes(), EMAN::PlatonicSym::get_asym_unit_triangles(), EMAN::DSym::get_asym_unit_triangles(), EMAN::CSym::get_asym_unit_triangles(), get_data_as_vector(), EMAN::TestUtil::get_debug_transform(), EMAN::EMUtil::get_euler_names(), EMAN::Transform::get_params(), EMAN::Transform::get_params_inverse(), EMAN::EMData::get_rotated_clip(), EMAN::Transform::get_trans(), EMAN::Transform::get_trans_2d(), EMAN::Util::group_proj_by_phitheta(), EMAN::TestTomoImage::insert_rectangle(), EMAN::PCA::Lanczos_ooc(), EMAN::length(), mainlb_(), EMAN::EMUtil::make_image_median(), EMAN::PointArray::mask(), EMAN::PointArray::mask_asymmetric_unit(), EMAN::EMData::mask_contig_region(), EMAN::EMData::max_3D_pixel_error(), EMAN::Util::nearest_ang(), EMAN::Util::nearestk_to_refdir(), EMAN::Matrix4::operator *(), EMAN::Vector4::operator *(), EMAN::Matrix3::operator *(), EMAN::Vector3::operator *(), EMAN::ScreenVector::operator *(), EMAN::operator *(), EMAN::Vec3< Type >::operator vector(), EMAN::Vector4::operator!=(), EMAN::Vector3::operator!=(), EMAN::ScreenVector::operator!=(), EMAN::Vector4::operator+(), EMAN::Point3::operator+(), EMAN::Vector3::operator+(), EMAN::ScreenPoint::operator+(), EMAN::ScreenVector::operator+(), EMAN::operator+(), EMAN::Point3::operator+=(), EMAN::ScreenPoint::operator+=(), EMAN::Vec2< Type >::operator+=(), EMAN::Vec3< Type >::operator+=(), EMAN::Vector4::operator-(), EMAN::Point3::operator-(), EMAN::Vector3::operator-(), EMAN::ScreenPoint::operator-(), EMAN::ScreenVector::operator-(), EMAN::operator-(), EMAN::Point3::operator-=(), EMAN::ScreenPoint::operator-=(), EMAN::Vec2< Type >::operator-=(), EMAN::Vec3< Type >::operator-=(), EMAN::operator/(), EMAN::operator<<(), EMAN::Vector4::operator==(), EMAN::Vector3::operator==(), EMAN::ScreenVector::operator==(), EMAN::Vector3::operator^(), EMAN::Symmetry3D::point_in_which_asym_unit(), EMAN::Util::point_is_in_triangle_2d(), EMAN::TestImageEllipse::process_inplace(), EMAN::TestImageHollowEllipse::process_inplace(), EMAN::SymSearchProcessor::process_inplace(), EMAN::AutoMaskAsymUnit::process_inplace(), EMAN::MeanZeroEdgeProcessor::process_inplace(), EMAN::SigmaZeroEdgeProcessor::process_inplace(), EMAN::WatershedProcessor::process_inplace(), EMAN::ExpProcessor::process_pixel(), EMAN::MaxValProjector::project3d(), EMAN::StandardProjector::project3d(), EMAN::EMData::read_images(), EMAN::EMData::read_images_ext(), EMAN::PointArray::right_transform(), EMAN::PDBReader::right_transform(), EMAN::Quaternion::rotate(), EMAN::Matrix4::rotation(), EMAN::Matrix3::rotationXYZtoUVW(), EMAN::EMData::set_attr_python(), EMAN::PointArray::set_from(), EMAN::PointArray::set_from_density_map(), EMAN::Transform::set_rotation(), EMAN::Transform::set_trans(), EMAN::Transform::transform(), EMAN::PointArray::transform(), EMAN::Transform::translate(), EMAN::Matrix4::translation(), EMAN::unit(), EMAN::MrcIO::update_stat(), EMAN::EMData::update_stat(), EMAN::Vec2< Type >::Vec2(), EMAN::Vec3< Type >::Vec3(), and EMAN::Vec4< Type >::Vec4().

#define V ( i,
 )     V[((j)-1)*imgsize + (i) - 1]

Definition at line 288 of file pca.cpp.

#define v0 (  )     v0[(i)-1]

Definition at line 289 of file pca.cpp.


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