Table 4.10:
e2proc3d.py Options
Argument |
Description |
|
|
-h, -help |
show this help message and exit |
-shrink=n |
Shrinks the image by integer n using median filter |
-scale=n |
Rescales the image by 'n', generally used with clip option. |
-clip=x |
y z xc yc zc Make the output have this size, no scaling. |
-fftclip=x |
y z Make the output have this size, rescaling by padding FFT. |
-filter=filtername:param1=val1:param2=val2 |
Apply a filter named 'filtername' with all its parameters/values. |
-apix=APIX |
A/pixel for S scaling |
-origin=x |
y z Set the coordinates for the pixel (0,0,0). |
-mult=f |
Scales the densities by 'f' in the output |
-add=f |
Adds a constant 'f' to the densities |
-calcsf=outputfile |
Calculate a radial structure factor. Must specify apix. |
-tophalf |
The output only keeps the top half map |
-icos5fhalfmap |
The input is the icos 5f top half map generated by the 'tophalf' option |
-outtype=image-type |
Set output image format, mrc, imagic, hdf, etc |
|
|