EMAN::RealPixelProcessor Class Reference

The base class for real space processor working on individual pixels. More...

#include <processor.h>

Inheritance diagram for EMAN::RealPixelProcessor:

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Collaboration diagram for EMAN::RealPixelProcessor:

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List of all members.

Public Member Functions

 RealPixelProcessor ()
void process_inplace (EMData *image)
 To process an image in-place.
virtual void set_params (const Dict &new_params)
 Set the processor parameters using a key/value dictionary.

Static Public Member Functions

static string get_group_desc ()
 Get the description of this group of processors.

Protected Member Functions

virtual void process_pixel (float *x) const =0
virtual void calc_locals (EMData *)
virtual void normalize (EMData *) const

Protected Attributes

float value
float maxval
float mean
float sigma

Detailed Description

The base class for real space processor working on individual pixels.

The processor won't consider the pixel's coordinates and neighbors.

Definition at line 1166 of file processor.h.


Constructor & Destructor Documentation

EMAN::RealPixelProcessor::RealPixelProcessor (  )  [inline]

Definition at line 1169 of file processor.h.

01169                                     :value(0), maxval(1), mean(0), sigma(0)
01170                 {
01171                 }


Member Function Documentation

virtual void EMAN::RealPixelProcessor::calc_locals ( EMData  )  [inline, protected, virtual]

Definition at line 1190 of file processor.h.

Referenced by process_inplace().

01191                 {
01192                 }

static string EMAN::RealPixelProcessor::get_group_desc (  )  [inline, static]

Get the description of this group of processors.

This function is defined in a parent class. It gives a introduction to a group of processors.

Returns:
The description of this group of processors.

Reimplemented from EMAN::Processor.

Definition at line 1183 of file processor.h.

01184                 {
01185                         return "The base class for real space processor working on individual pixels. The processor won't consider the pixel's coordinates and neighbors.";
01186                 }

virtual void EMAN::RealPixelProcessor::normalize ( EMData  )  const [inline, protected, virtual]

Definition at line 1193 of file processor.h.

01194                 {
01195                 }

void RealPixelProcessor::process_inplace ( EMData image  )  [virtual]

To process an image in-place.

For those processors which can only be processed out-of-place, override this function to just print out some error message to remind user call the out-of-place version.

Parameters:
image The image to be processed.

Implements EMAN::Processor.

Definition at line 1295 of file processor.cpp.

References calc_locals(), data, EMAN::EMData::get_attr(), EMAN::EMData::get_data(), EMAN::EMData::get_xsize(), EMAN::EMData::get_ysize(), EMAN::EMData::get_zsize(), LOGWARN, maxval, mean, process_pixel(), sigma, and EMAN::EMData::update().

01296 {
01297         if (!image) {
01298                 LOGWARN("NULL Image");
01299                 return;
01300         }
01301 
01302         maxval = image->get_attr("maximum");
01303         mean = image->get_attr("mean");
01304         sigma = image->get_attr("sigma");
01305 
01306         calc_locals(image);
01307 
01308         size_t size = (size_t)image->get_xsize() *
01309                           (size_t)image->get_ysize() *
01310                           (size_t)image->get_zsize();
01311         float *data = image->get_data();
01312 
01313         for (size_t i = 0; i < size; ++i) {
01314                 process_pixel(&data[i]);
01315         }
01316         image->update();
01317 }

virtual void EMAN::RealPixelProcessor::process_pixel ( float *  x  )  const [protected, pure virtual]

Implemented in EMAN::AbsoluateValueProcessor, EMAN::FloorValueProcessor, EMAN::BooleanProcessor, EMAN::RecipCarefullyProcessor, EMAN::ValuePowProcessor, EMAN::ValueSquaredProcessor, EMAN::ValueSqrtProcessor, EMAN::ToZeroProcessor, EMAN::CutToZeroProcessor, EMAN::BinarizeProcessor, EMAN::CollapseProcessor, EMAN::LinearXformProcessor, EMAN::ExpProcessor, EMAN::FiniteProcessor, EMAN::RangeThresholdProcessor, EMAN::SigmaProcessor, and EMAN::LogProcessor.

Referenced by process_inplace().

virtual void EMAN::RealPixelProcessor::set_params ( const Dict new_params  )  [inline, virtual]

Set the processor parameters using a key/value dictionary.

Parameters:
new_params A dictionary containing the new parameters.

Reimplemented from EMAN::Processor.

Reimplemented in EMAN::RecipCarefullyProcessor, EMAN::ValuePowProcessor, EMAN::CollapseProcessor, EMAN::LinearXformProcessor, EMAN::ExpProcessor, EMAN::FiniteProcessor, EMAN::RangeThresholdProcessor, and EMAN::SigmaProcessor.

Definition at line 1174 of file processor.h.

References EMAN::Processor::params, EMAN::Dict::size(), value, and EMAN::Dict::values().

01175                 {
01176                         params = new_params;
01177                         if (params.size() == 1) {
01178                                 vector < EMObject > dict_values = params.values();
01179                                 value = dict_values[0];
01180                         }
01181                 }


Member Data Documentation

float EMAN::RealPixelProcessor::maxval [protected]

Definition at line 1198 of file processor.h.

Referenced by process_inplace().

float EMAN::RealPixelProcessor::mean [protected]

Definition at line 1199 of file processor.h.

Referenced by process_inplace(), and EMAN::SigmaProcessor::process_pixel().

float EMAN::RealPixelProcessor::sigma [protected]

Definition at line 1200 of file processor.h.

Referenced by process_inplace(), and EMAN::SigmaProcessor::process_pixel().

float EMAN::RealPixelProcessor::value [protected]

Definition at line 1197 of file processor.h.

Referenced by EMAN::CollapseProcessor::process_pixel(), EMAN::BinarizeProcessor::process_pixel(), EMAN::CutToZeroProcessor::process_pixel(), EMAN::ToZeroProcessor::process_pixel(), EMAN::CollapseProcessor::set_params(), and set_params().


The documentation for this class was generated from the following files:
Generated on Tue Jun 11 12:43:35 2013 for EMAN2 by  doxygen 1.4.7