#include <symmetry.h>
Inheritance diagram for EMAN::OctahedralSym:
Public Member Functions | |
OctahedralSym () | |
Constructor calls PlatonicSym::init. | |
virtual | ~OctahedralSym () |
virtual string | get_name () const |
Return OctahedralSym::NAME. | |
virtual string | get_desc () const |
Get a description. | |
virtual int | get_max_csym () const |
Gets the maximum symmetry of this object. | |
virtual Transform | get_sym (const int n) const |
This function provides access to the unique rotational symmetries of an octahedron. | |
virtual int | get_nsym () const |
Gets the total number of unique roational symmetry operations associated with this symmetry For octahedral symmetry this is 24. | |
Static Public Member Functions | |
static Symmetry3D * | NEW () |
Factory support function NEW. | |
Static Public Attributes | |
static const string | NAME = "oct" |
The name of this class - used to access it from factories etc. Should be "oct". | |
Private Member Functions | |
OctahedralSym (const OctahedralSym &) | |
Disallow copy construction. | |
OctahedralSym & | operator= (const OctahedralSym &) |
Disallow assignment. |
"A cube has m=3, n=4, F=6 E=12=nF/2, V=8=nF/m,since vertices shared by 3 squares; It is composed of 6 squares. An octahedron has m=4, n=3, F=8 E=12=nF/2, V=6=nF/m,since vertices shared by 4 triangles"
Definition at line 779 of file symmetry.h.
EMAN::OctahedralSym::OctahedralSym | ( | ) | [inline] |
Constructor calls PlatonicSym::init.
Definition at line 784 of file symmetry.h.
References EMAN::PlatonicSym::init().
Referenced by NEW().
00784 {init();}
virtual EMAN::OctahedralSym::~OctahedralSym | ( | ) | [inline, virtual] |
EMAN::OctahedralSym::OctahedralSym | ( | const OctahedralSym & | ) | [private] |
Disallow copy construction.
virtual string EMAN::OctahedralSym::get_desc | ( | ) | const [inline, virtual] |
Get a description.
Implements EMAN::FactoryBase.
Definition at line 803 of file symmetry.h.
virtual int EMAN::OctahedralSym::get_max_csym | ( | ) | const [inline, virtual] |
Gets the maximum symmetry of this object.
This is used by OrientationGenerators, and is probably not something a general user would utilize.
Implements EMAN::Symmetry3D.
Definition at line 809 of file symmetry.h.
virtual string EMAN::OctahedralSym::get_name | ( | ) | const [inline, virtual] |
Return OctahedralSym::NAME.
Implements EMAN::FactoryBase.
Definition at line 798 of file symmetry.h.
References NAME.
00798 { return NAME; };
virtual int EMAN::OctahedralSym::get_nsym | ( | ) | const [inline, virtual] |
Gets the total number of unique roational symmetry operations associated with this symmetry For octahedral symmetry this is 24.
Implements EMAN::Symmetry3D.
Definition at line 834 of file symmetry.h.
Transform OctahedralSym::get_sym | ( | const int | n | ) | const [virtual] |
This function provides access to the unique rotational symmetries of an octahedron.
We have placed the octahedral symmetry group with a face along the z-axis. In all, there are 24 (accessed by get_nysm) unique rotational symmetric operations for the octahedron. In the terminology defined Append A (titled Symmetry Elements) in the manuscript Baldwin and Penczek, 2007. The Transform Class in SPARX and EMAN2. JSB 157(250-261), Doctor Phil has this to say: "B^4=A^3=1; BABA=1; implies AA=BAB, ABA=B^3 , AB^2A = BBBABBB and 20 words with at most a single A 1 B BB BBB A BA AB BBA BAB ABB BBBA BBAB BABB ABBB BBBAB BBABB BABBB BBBABB BBABBB BBBABBB also ABBBA is distinct yields 4 more words ABBBA BABBBA BBABBBA BBBABBBA for a total of 24 words Note A BBB A BBB A reduces to BBABB and B A BBB A is the same as A BBB A BBB etc."
n | the symmetric operation number. |
Implements EMAN::Symmetry3D.
Definition at line 1913 of file symmetry.cpp.
01914 { 01915 // These rotations courtesy of Phil Baldwin 01916 // We have placed the OCT symmetry group with a face along the z-axis 01917 static double lvl0=0.; 01918 static double lvl1=90.; 01919 static double lvl2=180.; 01920 01921 static double OCT[72] = {// This is with a face of a cube along z 01922 0,lvl0,0, 0,lvl0,90, 0,lvl0,180, 0,lvl0,270, 01923 0,lvl1,0, 0,lvl1,90, 0,lvl1,180, 0,lvl1,270, 01924 90,lvl1,0, 90,lvl1,90, 90,lvl1,180, 90,lvl1,270, 01925 180,lvl1,0, 180,lvl1,90, 180,lvl1,180, 180,lvl1,270, 01926 270,lvl1,0, 270,lvl1,90, 270,lvl1,180, 270,lvl1,270, 01927 0,lvl2,0, 0,lvl2,90, 0,lvl2,180, 0,lvl2,270 01928 }; 01929 01930 int idx = n % 24; 01931 // Transform3D ret; 01932 // ret.set_rotation((float)OCT[idx * 3 ],(float)OCT[idx * 3 + 1], (float)OCT[idx * 3 + 2] ); 01933 Dict d("type","eman"); 01934 d["az"] = (float)OCT[idx * 3 ]; 01935 d["alt"] = (float)OCT[idx * 3 + 1]; 01936 d["phi"] = (float)OCT[idx * 3 + 2]; 01937 return Transform(d); 01938 01939 }
static Symmetry3D* EMAN::OctahedralSym::NEW | ( | ) | [inline, static] |
Factory support function NEW.
Definition at line 790 of file symmetry.h.
References OctahedralSym().
00791 { 00792 return new OctahedralSym(); 00793 }
OctahedralSym& EMAN::OctahedralSym::operator= | ( | const OctahedralSym & | ) | [private] |
Disallow assignment.
const string OctahedralSym::NAME = "oct" [static] |
The name of this class - used to access it from factories etc. Should be "oct".
Definition at line 834 of file symmetry.h.
Referenced by EMAN::PlatonicSym::get_delimiters(), and get_name().