Table 4.9:
e2proc2d.py Options
Argument |
Description |
|
|
-version |
show program's version number and exit |
-h, -help |
show this help message and exit |
-apix=APIX |
A/pixel for S scaling |
-average |
Averages all input images (without alignment) and writes a single (normalized) output image |
-calcsf=n |
outputfile calculate a radial structure factor for the image and write it to the output file, must specify apix. divide into n angular bins |
-clip=xsize |
ysize Define the output image size. CLIP=xsize ysize |
-ctfsplit |
Splits the input file into output files with the same CTF parameters |
-exclude=exclude-list-file |
Excludes image numbers in EXCLUDE file |
-fftavg=filename |
Incoherent Fourier average of all images and write a single power spectrum image |
-filter=filtername:param1=val1:param2=val2 |
apply a filter named 'filtername' with all its parameters/values. |
-first=n |
the first image in the input to process [0 - n-1]) |
-inplace |
Output overwrites input, USE SAME FILENAME, DO NOT 'clip' images. |
-interlv=interleave-file |
Specifies a 2nd input file. Output will be 2 files interleaved. |
-last=n |
the last image in the input to process |
-list=listfile |
Works only on the image numbers in LIST file |
-meanshrink=n |
Reduce an image size by an integral scaling factor using average. Clip is not required. |
-mraprep |
this is an experimental option |
-norefs |
Skip any input images which are marked as references (usually used with classes.*) |
-outtype=image-type |
output image format, mrc, imagic, hdf, etc |
-plt=plt-file |
output the orientations in IMAGIC .plt file format |
-radon |
Do Radon transform |
-rfp |
this is an experimental option |
-scale=f |
Scale by specified scaling factor. Clip must also be specified to change the dimensions of the output map. |
-selfcl=steps |
mode Output file will be a 180x180 self-common lines map for each image. |
-setsfpairs |
Applies the radial structure factor of the 1st image to the 2nd, the 3rd to the 4th, etc |
-shrink=n |
Reduce an image size by an integral scaling factor, uses median filter. Clip is not required. |
-split=n |
Splits the input file into a set of n output files |
-verbose=n |
verbose level [1-4] |
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