#include <aligner.h>
Inheritance diagram for EMAN::RotateFlipAlignerIterative:
Public Member Functions | |
virtual EMData * | align (EMData *this_img, EMData *to_img, const string &cmp_name="dot", const Dict &cmp_params=Dict()) const |
To align 'this_img' with another image passed in through its parameters. | |
virtual EMData * | align (EMData *this_img, EMData *to_img) const |
virtual string | get_name () const |
Get the Aligner's name. | |
virtual string | get_desc () const |
virtual TypeDict | get_param_types () const |
Static Public Member Functions | |
Aligner * | NEW () |
TypeDict | static_get_param_types () |
Static Public Attributes | |
const string | NAME = "rotate_flip_iterative" |
r1 | inner ring | |
r2 | outer ring |
Definition at line 766 of file aligner.h.
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Implements EMAN::Aligner. Definition at line 771 of file aligner.h. References align(). 00772 { 00773 return align(this_img, to_img, "dot", Dict()); 00774 }
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To align 'this_img' with another image passed in through its parameters. The alignment uses a user-given comparison method to compare the two images. If none is given, a default one is used.
Implements EMAN::Aligner. Definition at line 1058 of file aligner.cpp. References EMAN::EMData::align(), EMAN::EMData::cmp(), EMAN::EMData::get_attr(), EMAN::EMData::process(), EMAN::EMData::process_inplace(), EMAN::EMData::set_attr(), EMAN::Dict::set_default(), EMAN::Transform::set_mirror(), and t. 01060 { 01061 Dict rot_params("r1",params.set_default("r1",-1),"r2",params.set_default("r2",-1)); 01062 EMData * r1 = this_img->align("rotational_iterative", to, rot_params,cmp_name, cmp_params); 01063 01064 EMData * flipped =to->process("xform.flip", Dict("axis", "x")); 01065 EMData * r2 = this_img->align("rotational_iterative", flipped,rot_params, cmp_name, cmp_params); 01066 Transform* t = r2->get_attr("xform.align2d"); 01067 t->set_mirror(true); 01068 r2->set_attr("xform.align2d",t); 01069 delete t; 01070 01071 float cmp1 = r1->cmp(cmp_name, to, cmp_params); 01072 float cmp2 = r2->cmp(cmp_name, flipped, cmp_params); 01073 01074 delete flipped; flipped = 0; 01075 01076 EMData *result = 0; 01077 01078 if (cmp1 < cmp2) { 01079 if( r2 ) 01080 { 01081 delete r2; 01082 r2 = 0; 01083 } 01084 result = r1; 01085 } 01086 else { 01087 if( r1 ) 01088 { 01089 delete r1; 01090 r1 = 0; 01091 } 01092 result = r2; 01093 result->process_inplace("xform.flip",Dict("axis","x")); 01094 } 01095 01096 return result; 01097 }
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Implements EMAN::Aligner. Definition at line 780 of file aligner.h. 00781 { 00782 return "Performs two rotational alignments, iterative style, one using the original image and one using the hand-flipped image. Decides which alignment is better using a comparitor and returns it"; 00783 }
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Get the Aligner's name. Each Aligner is identified by a unique name.
Implements EMAN::Aligner. Definition at line 775 of file aligner.h. 00776 {
00777 return NAME;
00778 }
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Implements EMAN::Aligner. Definition at line 790 of file aligner.h. 00791 { 00792 return static_get_param_types(); 00793 }
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Definition at line 785 of file aligner.h. 00786 { 00787 return new RotateFlipAlignerIterative(); 00788 }
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Definition at line 795 of file aligner.h. References EMAN::TypeDict::put(). 00795 { 00796 TypeDict d; 00797 d.put("r1", EMObject::INT, "Inner ring, pixels"); 00798 d.put("r2", EMObject::INT, "Outer ring, pixels"); 00799 return d; 00800 }
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Definition at line 70 of file aligner.cpp. |