Here is a list of all class members with links to the classes they belong to:
- A
: EMAN::SVDAnalyzer
- a_tilt
: EMAN::MrcIO::FeiMrcExtHeader
- abs()
: EMAN::Quaternion
- absi()
: EMAN::EMData
- AbsMaxMinAverager()
: EMAN::AbsMaxMinAverager
- accrue_mean()
: EMAN::MeanShrinkProcessor
- accrue_mean_one_p_five()
: EMAN::MeanShrinkProcessor
- accrue_median()
: EMAN::MedianShrinkProcessor
- actmsa
: EMAN::ImagicIO2::Imagic4D
- add()
: EMAN::PriorityQueue< ValueT, KeyT >, EMAN::Factory< T >, EMAN::EMData, EMAN::EMCache< T >, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- add_complex_at()
: EMAN::EMData
- add_complex_at_fast()
: EMAN::EMData
- add_data()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- add_image()
: EMAN::file_store, EMAN::newfile_store, EMAN::XYZAverager, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager
- add_image_list()
: EMAN::Averager
- add_imageio()
: EMAN::GlobalCache
- add_img()
: EMAN::Util
- add_img2()
: EMAN::Util
- add_img_abs()
: EMAN::Util
- add_incoherent()
: EMAN::EMData
- add_orientation()
: EMAN::OrientationGenerator
- add_tovol()
: EMAN::newfile_store
- addn_img()
: EMAN::Util
- addsquare()
: EMAN::EMData
- agauss()
: EMAN::Util
- ali2d_ccf_list()
: EMAN::Util
- ali2d_single_iter()
: EMAN::CUDA_Aligner
- ali_params
: EMAN::CUDA_multiref_aligner
- align()
: EMAN::XYZAligner, EMAN::EMData, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- align_180_ambiguous()
: EMAN::RotationalAligner
- align_2d()
: EMAN::PointArray
- align_trans_2d()
: EMAN::PointArray
- align_using_base()
: EMAN::ScaleAlignerABS
- alignment_2d()
: EMAN::CUDA_Aligner
- AlignOptions()
: AlignOptions
- all_translation
: EMAN::EMData
- alloc_data()
: EMAN::UnevenMatrix
- alpha
: EMAN::Util::KaiserBessel, KaiserBessel, EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D
- alpha2
: EMAN::ImagicIO2::Imagic4D
- alphar
: EMAN::Util::KaiserBessel, KaiserBessel
- alrl_ms()
: EMAN::Util
- alt
: EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- amax
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amean
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amin
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- amira_file
: EMAN::AmiraIO
- AmiraIO()
: EMAN::AmiraIO
- ampcont
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- amplitude
: EMAN::EMData, EMAN::EMAN1Ctf
- analyze()
: EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer
- Analyzer()
: EMAN::Analyzer
- ang_diff()
: EMAN::Util
- ang_n()
: EMAN::Util
- ang_to_xyz()
: EMAN::Util
- angexps
: APMQopt
- angle
: EMAN::ImagicIO2::Imagic4D
- angle_err_ri()
: EMAN::Util
- angle_sub_2pi()
: EMAN::Util
- angle_sub_pi()
: EMAN::Util
- angrefs
: APMQopt
- angvalid
: EMAN::SpiderIO::SpiderHeader
- aoverb
: EMAN::PifIO::PifImageHeader
- ap2ri()
: EMAN::Util, EMAN::EMData
- apix
: EMAN::SitusIO, EMAN::Ctf
- apix_x
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- apix_y
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- apix_z
: EMAN::XplorIO, EMAN::OmapIO::OmapHeader
- append_image()
: EMAN::EMData
- appliedDefocus
: EMAN::MrcIO::FeiMrcExtHeader
- apply_precision()
: EMAN::Util
- apply_radial_func()
: EMAN::EMData
- Applyws()
: EMAN::Util
- approxEqual()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3
- Are26Neighbors()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- AreaProcessor()
: EMAN::AreaProcessor
- areasize
: EMAN::AreaProcessor
- areav_()
: EMAN::Util
- array
: EMAN::EMArray< T >
- ARRAY
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- array_mutation()
: EMAN::Util
- as_list()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion
- assert_valid_2d()
: EMAN::Transform
- assert_valid_aspect()
: EMAN::IntTranslateProcessor, EMAN::TransformProcessor
- assign_groups()
: EMAN::Util
- assign_groups_comparator()
: assign_groups_comparator
- assign_projangles()
: EMAN::Util
- at()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Transform
- atomName
: EMAN::PDBReader
- attr_dict
: EMAN::EMData
- au_sym_triangles
: EMAN::Symmetry3D
- auto_correlation_pick()
: EMAN::BoxingTools
- avdens
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- average_circ_sub()
: EMAN::EMData
- Averager()
: EMAN::Averager
- az
: EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- b
: EMAN::PifIO::PifColorMap, EMAN::EMObject
- b_tilt
: EMAN::MrcIO::FeiMrcExtHeader
- background
: EMAN::EMAN2Ctf
- backproject()
: EMAN::EMData
- backproject3d()
: EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::XYZProjector
- BackProjectionReconstructor()
: EMAN::BackProjectionReconstructor
- basealigner
: EMAN::ScaleAlignerABS
- basealigner_params
: EMAN::ScaleAlignerABS
- bb_enumerateMPI_()
: EMAN::Util
- bckpj3()
: EMAN::ChaoProjector
- become_big_endian()
: EMAN::ByteOrder
- become_host_endian()
: EMAN::ImageIO, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- become_little_endian()
: EMAN::ByteOrder
- begin()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Log, EMAN::Dict
- beta
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D
- beta2
: EMAN::ImagicIO2::Imagic4D
- bfactor
: EMAN::PointArray, EMAN::Ctf
- bgsize
: EMAN::Wiener2DAutoAreaProcessor
- bilinear()
: EMAN::Util
- bilinear_interpolate()
: EMAN::Util
- BINARY_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- binary_operate()
: EMAN::MinPixelOperator, EMAN::MaxPixelOperator
- binning
: EMAN::MrcIO::FeiMrcExtHeader
- bispecRotTransInvDirect()
: EMAN::EMData
- bispecRotTransInvN()
: EMAN::EMData
- BIT
: EMAN::VtkIO
- BITMAP
: EMAN::EMFTGL
- bkg
: EMAN::PifIO::PifImageHeader
- BOOL
: EMAN::EMObject
- BOOLEAN
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- bounding_box()
: EMAN::EMFTGL
- BoxingTools()
: EMAN::BoxingTools
- BoxSVDClassifier()
: EMAN::BoxSVDClassifier
- BPCQ()
: EMAN::Util
- branch_factor_0()
: EMAN::Util
- branch_factor_2()
: EMAN::Util
- branch_factor_3()
: EMAN::Util
- branch_factor_4()
: EMAN::Util
- branchMPI()
: EMAN::Util
- buffer
: EMAN::MarchingCubes, EMAN::ImagicIO2::Imagic4D, EMAN::GLUtil
- build_I0table()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- build_sBtable()
: EMAN::Util::sincBlackman, sincBlackman
- buildFFTVolume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- buildNorm2Volume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nnSSNR_Reconstructor
- buildNorm3Volume()
: EMAN::nnSSNR_ctfReconstructor
- buildNormVolume()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- BUTTERWORTH_HIGH_PASS
: EMAN::Processor
- BUTTERWORTH_HOMOMORPHIC
: EMAN::Processor
- BUTTERWORTH_LOW_PASS
: EMAN::Processor
- ByteOrder
: EMAN::SerIO::SerHeader
- cache_au_planes()
: EMAN::Symmetry3D
- cache_size
: EMAN::Symmetry3D
- cached_au_planes
: EMAN::Symmetry3D
- calc_amp1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_amplitude()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_az_dist()
: EMAN::EMData
- calc_bessel()
: EMAN::Util
- calc_best_fft_size()
: EMAN::Util
- calc_bilinear_least_square()
: EMAN::Util
- calc_ccf()
: EMAN::EMData
- calc_ccfx()
: EMAN::EMData
- calc_center_density()
: EMAN::EMData
- calc_center_of_mass()
: EMAN::EMData
- calc_correlation()
: EMAN::XYData
- calc_ctf1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_dist()
: EMAN::EMData
- calc_fast_sigma_image()
: EMAN::EMData
- calc_flcf()
: EMAN::EMData
- calc_fourier_shell_correlation()
: EMAN::EMData
- calc_g1()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_g2()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_gamma()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_highest_locations()
: EMAN::EMData
- calc_hist()
: EMAN::EMData
- calc_lambda()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_least_square_fit()
: EMAN::Util
- calc_locals()
: EMAN::MaskGaussInvProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor
- calc_max_index()
: EMAN::EMData
- calc_max_location()
: EMAN::EMData
- calc_max_location_wrap()
: EMAN::EMData
- calc_max_location_wrap_intp()
: EMAN::EMData
- calc_mean()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_min_index()
: EMAN::EMData
- calc_min_location()
: EMAN::EMData
- calc_mutual_correlation()
: EMAN::EMData
- calc_n_highest_locations()
: EMAN::EMData
- calc_noise()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf
- calc_radial_dist()
: EMAN::EMData
- calc_ref_image_index()
: EMAN::LstIO, EMAN::LstFastIO
- calc_sigma()
: EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeMaskProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::NormalizeProcessor
- calc_sigma_diff()
: EMAN::EMData
- calc_snr()
: EMAN::EMAN1Ctf
- calcsigmamean
: EMAN::KMeansAnalyzer
- calculate_min_max_vals()
: EMAN::MarchingCubes
- calculate_surface()
: EMAN::MarchingCubes
- call_cl1()
: EMAN::Util
- CANG()
: EMAN::Util
- cb2sph()
: EMAN::ChaoProjector
- cc
: EMAN::MarchingCubes
- ccc
: EMAN::ImagicIO2::Imagic4D
- ccc3d
: EMAN::ImagicIO2::Imagic4D
- ccc_images()
: EMAN::Util
- ccc_images_G()
: EMAN::Util
- ccf
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- cconj()
: EMAN::EMData
- cell_alpha
: EMAN::XplorIO
- cell_beta
: EMAN::XplorIO
- cell_gama
: EMAN::XplorIO
- cella1
: EMAN::ImagicIO::ImagicHeader
- cella2
: EMAN::ImagicIO::ImagicHeader
- cellx
: EMAN::ImagicIO::ImagicHeader
- celly
: EMAN::ImagicIO::ImagicHeader
- cellz
: EMAN::ImagicIO::ImagicHeader
- center_origin()
: EMAN::EMData
- center_origin_fft()
: EMAN::EMData
- center_origin_yz()
: EMAN::EMData
- center_to_zero()
: EMAN::PointArray
- centers
: EMAN::KMeansAnalyzer
- chainId
: EMAN::PDBReader
- change_filename_ext()
: EMAN::Util
- changecount
: EMAN::EMData
- CHAR
: EMAN::VtkIO, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- check_file_by_magic()
: EMAN::Util
- check_image()
: EMAN::TestUtil
- check_read_access()
: EMAN::ImageIO
- check_region()
: EMAN::ImageIO
- check_write_access()
: EMAN::ImageIO
- ciend
: cilist
- cierr
: cilist
- cifmt
: cilist
- CircularMaskProcessor()
: EMAN::CircularMaskProcessor
- cirec
: cilist
- cit
: EMAN::Symmetry3D
- ciunit
: cilist
- cl1()
: EMAN::Util
- ClampingProcessor()
: EMAN::ClampingProcessor
- classify()
: EMAN::BoxingTools
- classno
: EMAN::ImagicIO2::Imagic4D
- CleanUpSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- clear()
: EMAN::PCA, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor, EMAN::CustomVector< type >, EMAN::Dict
- clear_min_max_vals()
: EMAN::MarchingCubes
- clearupdate()
: EMAN::EMData
- clip_inplace()
: EMAN::EMData
- ClipInplaceVariables()
: EMAN::EMData::ClipInplaceVariables
- clipnum
: EMAN::EmimIO::EmimImageHeader
- cluster_equalsize()
: EMAN::Util
- cluster_pairwise()
: EMAN::Util
- cm_euc()
: EMAN::EMData
- cmap
: EMAN::ColorRGBGenerator
- cml_disc()
: EMAN::Util
- cml_init_rot()
: EMAN::Util
- cml_line_in3d()
: EMAN::Util
- cml_line_insino()
: EMAN::Util
- cml_line_insino_all()
: EMAN::Util
- cml_prepare_line()
: EMAN::Util
- cml_spin_psi()
: EMAN::Util
- cml_spin_psi_now()
: EMAN::Util
- cml_update_rot()
: EMAN::Util
- cml_weights()
: EMAN::Util
- cmp()
: EMAN::XYZCmp, EMAN::EMData, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp
- cmp1()
: EMAN::Util
- cmp2()
: EMAN::Util
- cmplx()
: EMAN::EMData
- CmpMode
: EMAN::BoxingTools
- cmtotvar
: EMAN::ImagicIO2::Imagic4D
- cog()
: EMAN::EMData
- color_vertices()
: EMAN::MarchingCubes
- colored_rectangle()
: EMAN::GLUtil
- colormap
: EMAN::ColorRGBGenerator
- colorMappingByClassSize()
: EMAN::BoxSVDClassifier
- ColorRGBGenerator()
: EMAN::ColorRGBGenerator
- colors
: EMAN::BoxingTools
- colreverse()
: EMAN::Util
- column()
: EMAN::Matrix4, EMAN::Matrix3
- comment
: EMAN::EmIO::EMHeader
- common_lines()
: EMAN::EMData
- common_lines_real()
: EMAN::EMData
- complex
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- COMPLEX16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- COMPLEX8_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- components26()
: wustl_mm::SkeletonMaker::Volume
- components6()
: wustl_mm::SkeletonMaker::Volume
- compress_image_mask()
: EMAN::Util
- compute_1d()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_complex()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_2d_real()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- compute_missingwedge()
: EMAN::EMData
- conj()
: EMAN::Quaternion
- conjg()
: EMAN::EMData
- const_iterator()
: EMAN::Dict::const_iterator
- constrained_helix()
: EMAN::Util
- constrained_helix_test()
: EMAN::Util
- contour_isosurface()
: EMAN::GLUtil
- convolute()
: EMAN::EMData
- ConvolutionProcessor()
: EMAN::ConvolutionProcessor
- CoordinateProcessor()
: EMAN::CoordinateProcessor
- coosmsa
: EMAN::ImagicIO2::Imagic4D
- copy()
: EMAN::PointArray, EMAN::PDBReader, EMAN::EMData
- copy_empty_head()
: EMAN::EMData
- copy_exclude_keys()
: EMAN::Dict
- copy_exclusive_keys()
: EMAN::Dict
- copy_from()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- copy_head()
: EMAN::EMData
- copy_keys_in()
: EMAN::Dict
- copy_matrix_into_array()
: EMAN::Transform
- copy_relevant_params()
: EMAN::FactoryBase
- count
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::EmimIO::EmimFileHeader
- count_stop
: EMAN::PDBReader
- countExt()
: wustl_mm::SkeletonMaker::Volume
- countInt()
: wustl_mm::SkeletonMaker::Volume
- countIntEuler()
: wustl_mm::SkeletonMaker::Volume
- coveig()
: EMAN::Util
- coveig_for_py()
: EMAN::Util
- covmat
: EMAN::PCAsmall
- create_inverse()
: EMAN::Quaternion
- create_kernel()
: EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::AreaProcessor
- create_processor_image()
: EMAN::ImageProcessor
- create_radial_func()
: EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor
- Crosrng_e()
: EMAN::Util
- Crosrng_ew()
: EMAN::Util
- Crosrng_ms()
: EMAN::Util
- Crosrng_ms_delta()
: EMAN::Util
- Crosrng_msg()
: EMAN::Util
- Crosrng_msg_m()
: EMAN::Util
- Crosrng_msg_s()
: EMAN::Util
- Crosrng_msg_vec()
: EMAN::Util
- Crosrng_msg_vec_p()
: EMAN::Util
- Crosrng_ns()
: EMAN::Util
- Crosrng_psi()
: EMAN::Util
- Crosrng_sm_psi()
: EMAN::Util
- cross()
: EMAN::Vec3< Type >
- cs
: EMAN::Ctf
- CSym()
: EMAN::CSym
- CTF
: AlignOptions, EMAN::EMObject, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ctf
: EMAN::Wiener2DFourierProcessor
- ctf2
: EMAN::point_t
- ctf2_rimg()
: EMAN::Util
- CTF_
: EMAN::Processor
- ctf_a0
: EMAN::PifIO::PifFileHeader
- ctf_a1
: EMAN::PifIO::PifFileHeader
- ctf_a2
: EMAN::PifIO::PifFileHeader
- ctf_a3
: EMAN::PifIO::PifFileHeader
- ctf_a4
: EMAN::PifIO::PifFileHeader
- ctf_a5
: EMAN::PifIO::PifFileHeader
- CTF_AMP
: EMAN::Ctf
- CTF_BACKGROUND
: EMAN::Ctf
- ctf_img()
: EMAN::Util
- CTF_MAGIC
: EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO
- ctf_params
: EMAN::CUDA_multiref_aligner
- ctf_rimg()
: EMAN::Util
- CTF_SIGN
: EMAN::Ctf
- CTF_SNR
: EMAN::Ctf
- CTF_SNR_SMOOTH
: EMAN::Ctf
- CTF_TOTAL
: EMAN::Ctf
- CTF_WIENER_FILTER
: EMAN::Ctf
- CtfCAutoAverager()
: EMAN::CtfCAutoAverager
- CtfCWautoAverager()
: EMAN::CtfCWautoAverager
- CTFOS
: EMAN::Ctf
- CtfType
: EMAN::Ctf
- CUDA_Aligner()
: EMAN::CUDA_Aligner
- cuda_available()
: EMAN::EMUtil
- CUDA_multiref_aligner()
: EMAN::CUDA_multiref_aligner
- cur
: wustl_mm::SkeletonMaker::GridQueue2
- cur_h
: EMAN::SpiderIO
- curveRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- curveSkeleton()
: wustl_mm::SkeletonMaker::Volume
- curveSkeleton2D()
: wustl_mm::SkeletonMaker::Volume
- CustomVector()
: EMAN::CustomVector< type >
- cut_slice()
: EMAN::EMData
- cyclicshift()
: EMAN::Util
- d
: d_ang, EMAN::EMObject
- d_ang()
: d_ang
- data
: EMAN::XYData, BPKT, EMAN::FourierPixelInserter3D, EMAN::UnevenMatrix, EMAN::CustomVector< type >, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMDataForCuda
- data_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- data_offset_array
: EMAN::SerIO
- DATA_TAG
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- data_type
: EMAN::EmIO::EMHeader
- datamode
: EMAN::SerIO
- DATASET_UNKNOWN
: EMAN::VtkIO
- DatasetType
: EMAN::VtkIO
- datatype
: EMAN::VtkIO, EMAN::ImagicIO2, EMAN::ImagicIO
- DataType
: EMAN::VtkIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::Gatan2IO, EMAN::EmIO
- datatype_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- DATATYPE_UNKNOWN
: EMAN::VtkIO
- DataTypeID
: EMAN::SerIO::SerHeader
- datatypeid
: EMAN::SerIO
- date
: EMAN::SpiderIO::SpiderHeader, EMAN::EmIO::EMHeader
- debug()
: EMAN::Log
- DEBUG_LOG
: EMAN::Log
- debug_print_parms()
: EMAN::EMData
- decimate()
: EMAN::Util
- defangle
: EMAN::ImagicIO2::Imagic4D
- default_bins
: EMAN::HistogramBin
- default_emandir
: EMAN::Log
- default_emanlog
: EMAN::Log
- default_max
: EMAN::ClampingProcessor
- default_min
: EMAN::ClampingProcessor
- default_sigma
: EMAN::NSigmaClampingProcessor
- DEFINE_IMAGEIO_FUNC
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- defocus
: EMAN::MrcIO::FeiMrcExtHeader, EMAN::Ctf
- defocus1
: EMAN::ImagicIO2::Imagic4D
- defocus2
: EMAN::ImagicIO2::Imagic4D
- deg2rad
: EMAN::EMConsts
- del_attr()
: EMAN::EMData
- del_attr_dict()
: EMAN::EMData
- delete_au_planes()
: EMAN::Symmetry3D
- delete_disconnected_regions()
: EMAN::EMData
- Density2PointsArrayAlgorithm
: EMAN::PointArray, EMAN::PDBReader
- densmax
: EMAN::ImagicIO2::Imagic4D
- densmin
: EMAN::ImagicIO2::Imagic4D
- depad()
: EMAN::EMData
- depad_corner()
: EMAN::EMData
- depth
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- desc
: EMAN::E2Exception
- desc_data
: EMAN::UnevenMatrix
- desc_dict
: EMAN::TypeDict
- det2x2()
: EMAN::Matrix3
- detect_problem_keys()
: EMAN::Transform
- determinant()
: EMAN::Matrix3
- determine_slice_agreement()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- df3file
: EMAN::Df3IO
- Df3IO()
: EMAN::Df3IO
- dfang
: EMAN::EMAN2Ctf
- dfdiff
: EMAN::EMAN2Ctf
- dict
: EMAN::Dict
- Dict()
: EMAN::Dict
- DIFFUSE_COLOR_COUNT
: EMAN::U3DWriter
- disorder2()
: EMAN::Util
- distanceFromOrigin()
: EMAN::Point3
- distanceFromOriginSquared()
: EMAN::Point3
- distanceTo()
: EMAN::Point3
- distanceToSquared()
: EMAN::Point3
- distmx()
: EMAN::PointArray
- div()
: EMAN::EMData
- div_filter()
: EMAN::Util
- div_img()
: EMAN::Util
- divkbsinh()
: EMAN::EMData
- divkbsinh_rect()
: EMAN::EMData
- divn_filter()
: EMAN::Util
- divn_img()
: EMAN::Util
- dm3file
: EMAN::DM3IO
- DM3IO()
: EMAN::DM3IO
- dm4file
: EMAN::DM4IO
- DM4IO()
: EMAN::DM4IO
- do_compare_slice_work()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- do_fft()
: EMAN::EMData
- do_fft_inplace()
: EMAN::EMData
- do_ift()
: EMAN::EMData
- do_ift_inplace()
: EMAN::EMData
- do_insert_slice_work()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- do_radon()
: EMAN::EMData
- DoGFourierProcessor()
: EMAN::DoGFourierProcessor
- dopca()
: EMAN::PCA
- dopca_lan()
: EMAN::PCA
- dopca_ooc()
: EMAN::PCA
- dosqrt
: EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor
- dot()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::EMData
- dot_rotate_translate()
: EMAN::EMData
- DOUBLE
: EMAN::VtkIO, EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- downsample()
: EMAN::EMData
- draw_cube()
: EMAN::MarchingCubes
- drawing_level
: EMAN::MarchingCubes
- dsbg
: EMAN::EMAN2Ctf
- dstart
: EMAN::FitsIO
- DSym()
: EMAN::DSym
- dt
: EMAN::AmiraIO
- dtable
: EMAN::Util::KaiserBessel, KaiserBessel
- dtheta
: AlignOptions
- dtype
: EMAN::FitsIO
- dump()
: EMAN::TypeDict, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- dump_dict()
: EMAN::EMUtil
- dump_emdata()
: EMAN::TestUtil
- dump_image_from_file()
: EMAN::TestUtil
- dump_table()
: EMAN::Util::KaiserBessel, KaiserBessel
- dvid
: EMAN::MrcIO::FeiMrcHeader
- dx
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- dy
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- dz
: EMAN::SpiderIO::SpiderHeader, EMAN::CircularMaskProcessor, EMAN::EmimIO::EmimImageHeader
- e0
: EMAN::Quaternion
- e1
: EMAN::Quaternion
- e2
: EMAN::Quaternion
- E2Exception()
: EMAN::E2Exception
- e3
: EMAN::Quaternion
- ealpha
: EMAN::ImagicIO2::Imagic4D
- eangle
: EMAN::ImagicIO2::Imagic4D
- ebeta
: EMAN::ImagicIO2::Imagic4D
- efh
: EMAN::EmimIO
- egamma
: EMAN::ImagicIO2::Imagic4D
- eigenimages
: EMAN::PCA
- eigval
: EMAN::PCAlarge, EMAN::PCAsmall
- elem()
: EMAN::CustomVector< type >
- elements
: EMAN::CustomVector< type >
- elementSym
: EMAN::PDBReader
- em_calloc()
: EMAN::EMUtil
- EM_CHAR
: EMAN::EMUtil
- EM_CONVEX
: EMAN::EmIO
- em_data
: EMAN::ColorRGBGenerator
- EM_DOUBLE
: EMAN::EMUtil
- EM_EM_CHAR
: EMAN::EmIO
- EM_EM_COMPLEX
: EMAN::EmIO
- EM_EM_DOUBLE
: EMAN::EmIO
- EM_EM_FLOAT
: EMAN::EmIO
- EM_EM_INT
: EMAN::EmIO
- EM_EM_SHORT
: EMAN::EmIO
- EM_EM_UNKNOWN
: EMAN::EmIO
- em_file
: EMAN::EmIO
- EM_FLOAT
: EMAN::EMUtil
- EM_FLOAT_COMPLEX
: EMAN::EMUtil
- em_free()
: EMAN::EMUtil
- EM_INT
: EMAN::EMUtil
- EM_MAC
: EMAN::EmIO
- em_malloc()
: EMAN::EMUtil
- em_memcpy()
: EMAN::EMUtil
- em_memset()
: EMAN::EMUtil
- EM_OS8
: EMAN::EmIO
- EM_PC
: EMAN::EmIO
- em_realloc()
: EMAN::EMUtil
- EM_SGI
: EMAN::EmIO
- EM_SHORT
: EMAN::EMUtil
- EM_SHORT_COMPLEX
: EMAN::EMUtil
- EM_UCHAR
: EMAN::EMUtil
- EM_UINT
: EMAN::EMUtil
- EM_UNKNOWN
: EMAN::EMUtil
- EM_UNKNOWN_MACHINE
: EMAN::EmIO
- EM_USHORT
: EMAN::EMUtil
- EM_USHORT_COMPLEX
: EMAN::EMUtil
- EM_VAX
: EMAN::EmIO
- EMAN1Ctf()
: EMAN::EMAN1Ctf
- EMAN2Ctf()
: EMAN::EMAN2Ctf
- eman_copysign()
: EMAN::Util
- eman_erfc()
: EMAN::Util
- EmanOrientationGenerator()
: EMAN::EmanOrientationGenerator
- EMArray()
: EMAN::EMArray< T >
- EMCache()
: EMAN::EMCache< T >
- emdata
: wustl_mm::SkeletonMaker::VolumeData, EMAN::EMObject
- EMDATA
: EMAN::EMObject
- EMData()
: EMAN::EMData
- EMDATA_BUSY
: EMAN::EMData
- EMDATA_CPU_NEEDS_UPDATE
: EMAN::EMData
- EMDATA_DATA_EXT
: EMAN::TestUtil
- EMDATA_FFTODD
: EMAN::EMData
- EMDATA_FH
: EMAN::EMData
- EMDATA_FLIP
: EMAN::EMData
- EMDATA_GPU_NEEDS_UPDATE
: EMAN::EMData
- EMDATA_GPU_RO_NEEDS_UPDATE
: EMAN::EMData
- EMDATA_HASCTFF
: EMAN::EMData
- EMDATA_HEADER_EXT
: EMAN::TestUtil
- EMDATA_NEEDUPD
: EMAN::EMData
- EMDATA_PAD
: EMAN::EMData
- EMDATA_SHUFFLE
: EMAN::EMData
- EMDataFlags
: EMAN::EMData
- EMDataType
: EMAN::EMUtil
- EMFourierFilter()
: EMAN::Processor
- EMFourierFilterFunc()
: EMAN::Processor
- EMFourierFilterInPlace()
: EMAN::Processor
- EMFTGL()
: EMAN::EMFTGL
- EMFTGLFontInstance()
: EMAN::EMFTGL::EMFTGLFontInstance
- EMFTGLManager()
: EMAN::EMFTGL::EMFTGLManager
- emh
: EMAN::EmIO
- EMIM_COMPLEX
: EMAN::EmimIO
- emim_file
: EMAN::EmimIO
- EmimIO()
: EMAN::EmimIO
- EmIO()
: EMAN::EmIO
- EMObject()
: EMAN::EMObject
- emobject_farray_to_py()
: EMAN::TestUtil
- emobject_strarray_to_py()
: EMAN::TestUtil
- emobject_to_py()
: EMAN::TestUtil
- emobject_transformarray_to_py()
: EMAN::TestUtil
- end
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Log, EMAN::Dict, EMAN::PawelProjector::IPCube
- endian
: EMAN::PifIO::PifFileHeader
- ener()
: EMAN::Util
- ener_tot()
: EMAN::Util
- entry_id
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- EntryType
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- equal()
: EMAN::EMData, EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- equation_of_plane()
: EMAN::Util
- erase()
: EMAN::Dict
- erodeHelix()
: wustl_mm::SkeletonMaker::Volume
- erodeSheet()
: wustl_mm::SkeletonMaker::Volume
- err3d
: EMAN::ImagicIO2::Imagic4D
- ERR_LIMIT
: EMAN::Transform
- errar
: EMAN::ImagicIO2::Imagic4D
- error
: EMAN::Log, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- ERROR_LOG
: EMAN::Log
- eval()
: EMAN::Util
- even
: EMAN::PifIO::PifFileHeader
- even_angles()
: EMAN::Util
- EvenOrientationGenerator()
: EMAN::EvenOrientationGenerator
- exclude_numbers_io()
: EMAN::EMUtil
- exp_time
: EMAN::MrcIO::FeiMrcExtHeader
- explore()
: EMAN::Util
- explore2()
: EMAN::Util
- exponent
: EMAN::MaskGaussProcessor
- ExpProcessor()
: EMAN::ExpProcessor
- exshift
: EMAN::ImagicIO2::Imagic4D
- extra
: EMAN::MrcIO::FeiMrcHeader
- extract_box()
: EMAN::EMData
- extract_plane()
: EMAN::EMData
- extract_plane_rect()
: EMAN::EMData
- extract_plane_rect_fast()
: EMAN::EMData
- extractline()
: EMAN::EMData
- extractpoint()
: EMAN::EMData
- extractpoint2()
: EMAN::Util
- EXTRUDE
: EMAN::EMFTGL
- eyshift
: EMAN::ImagicIO2::Imagic4D
- ezshift
: EMAN::ImagicIO2::Imagic4D
- f
: EMAN::EMObject
- F32
: EMAN::U3DWriter
- F64
: EMAN::U3DWriter
- fac
: EMAN::Util::KaiserBessel, KaiserBessel
- facadj
: EMAN::Util::KaiserBessel, KaiserBessel
- face_size
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- Factory()
: EMAN::Factory< T >
- FactoryBase()
: EMAN::FactoryBase
- FakeKaiserBessel()
: EMAN::Util::FakeKaiserBessel, FakeKaiserBessel
- farray
: EMAN::EMObject
- fast_acos()
: EMAN::Util
- fast_exp()
: EMAN::Util
- fast_floor()
: EMAN::Util
- fast_get_image_type()
: EMAN::EMUtil
- fc
: EMAN::Util::sincBlackman, sincBlackman
- feimrch
: EMAN::MrcIO
- ff
: EMAN::U3DWriter, EMAN::MarchingCubes
- FFT_IN_PLACE
: EMAN::EMData
- FFT_OUT_OF_PLACE
: EMAN::EMData
- fft_resample()
: EMAN::FFTResampleProcessor
- fft_shuffle()
: EMAN::EMData
- fftc_d()
: EMAN::Util
- fftc_q()
: EMAN::Util
- FFTPLACE
: EMAN::EMData
- fftr_d()
: EMAN::Util
- fftr_q()
: EMAN::Util
- FH2F()
: EMAN::EMData
- FH2Real()
: EMAN::EMData
- file_lock_wait()
: EMAN::Util
- file_offset
: EMAN::VtkIO, EMAN::PgmIO
- file_rw_dict
: EMAN::GlobalCache
- file_store()
: EMAN::file_store
- filename
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::E2Exception, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- filetype
: EMAN::VtkIO
- FileType
: EMAN::PgmIO
- fill_nearby()
: EMAN::AutoMask3DProcessor
- filter_by_image()
: EMAN::EMData
- filter_stack()
: EMAN::CUDA_Aligner
- find()
: EMAN::Dict
- find_3d_threshold()
: EMAN::EMData
- find_max()
: EMAN::Util
- find_min_and_max()
: EMAN::Util
- find_pixels_with_value()
: EMAN::EMData
- find_radial_max()
: EMAN::BoxingTools
- find_region()
: EMAN::WatershedProcessor
- find_type()
: EMAN::TypeDict
- finish()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor, EMAN::XYZAverager, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- FiniteProcessor()
: EMAN::FiniteProcessor
- first_h
: EMAN::SpiderIO
- first_ring
: AlignOptions
- fitsfile
: EMAN::FitsIO
- FitsIO()
: EMAN::FitsIO
- flag
: EMAN::EmimIO::EmimFileHeader
- flags
: EMAN::EMData
- flip23()
: EMAN::Util
- flip_complex_phase()
: EMAN::Util
- flip_image()
: EMAN::Util
- FLOAT
: EMAN::VtkIO, EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- FLOAT_POINTER
: EMAN::EMObject
- FLOAT_SIZE
: EMAN::XplorIO, EMAN::SitusIO
- FLOATARRAY
: EMAN::EMObject
- FloatPoint()
: EMAN::FloatPoint
- FloatSize()
: EMAN::FloatSize
- fltb
: EMAN::Util::KaiserBessel, EMAN::Util::sincBlackman, KaiserBessel, sincBlackman
- flush()
: EMAN::ImageIO
- fm
: EMAN::EMFTGL
- font
: EMAN::EMFTGL::EMFTGLFontInstance
- font_file_name
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- font_instances
: EMAN::EMFTGL::EMFTGLManager
- font_mode
: EMAN::EMFTGL::EMFTGLFontInstance
- FontMode
: EMAN::EMFTGL
- force_add()
: EMAN::Factory< T >
- Four_ds()
: EMAN::EMData
- Four_shuf_ds_cen_us()
: EMAN::EMData
- fourier_filter_types
: EMAN::Processor
- fourier_phaseshift180()
: EMAN::Phase180Processor
- fouriergridrot2d()
: EMAN::EMData
- fouriergridrot_shift2d()
: EMAN::EMData
- FourierInserter3DMode1()
: EMAN::FourierInserter3DMode1
- FourierInserter3DMode2()
: EMAN::FourierInserter3DMode2
- FourierInserter3DMode3()
: EMAN::FourierInserter3DMode3
- FourierInserter3DMode5()
: EMAN::FourierInserter3DMode5
- FourierInserter3DMode6()
: EMAN::FourierInserter3DMode6
- FourierInserter3DMode7()
: EMAN::FourierInserter3DMode7
- FourierInserter3DMode8()
: EMAN::FourierInserter3DMode8
- FourierPixelInserter3D()
: EMAN::FourierPixelInserter3D
- FourierPlaneReconstructor()
: EMAN::FourierPlaneReconstructor
- FourierReconstructor()
: EMAN::FourierReconstructor
- FourierReconstructorSimple2D()
: EMAN::FourierReconstructorSimple2D
- FourierWeightAverager()
: EMAN::FourierWeightAverager
- FourInterpol()
: EMAN::EMData
- FourTruncate()
: EMAN::EMData
- fp
: EMAN::EMObject
- free_memory()
: EMAN::FourierPixelInserter3D, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::ReconstructorVolumeData, EMAN::EMData
- free_rdata()
: EMAN::EMData
- freenorm
: EMAN::FourierWeightAverager, EMAN::ImageAverager
- Frngs()
: EMAN::Util
- Frngs_inv()
: EMAN::Util
- from_dict()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- from_string()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- from_vector()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- fseek_to()
: EMAN::PifIO
- fullnx
: EMAN::FourierPixelInserter3D
- fullny
: EMAN::FourierPixelInserter3D
- fullnz
: EMAN::FourierPixelInserter3D
- fwdpj3()
: EMAN::ChaoProjector
- g
: EMAN::PifIO::PifColorMap
- gamma
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D
- gamma2
: EMAN::ImagicIO2::Imagic4D
- GATAN2_CHAR
: EMAN::Gatan2IO
- GATAN2_COMPLEX
: EMAN::Gatan2IO
- gatan2_file
: EMAN::Gatan2IO
- GATAN2_FLOAT
: EMAN::Gatan2IO
- GATAN2_INT
: EMAN::Gatan2IO
- GATAN2_INVALID
: EMAN::Gatan2IO
- GATAN2_PACKED_COMPLEX
: EMAN::Gatan2IO
- GATAN2_SHORT
: EMAN::Gatan2IO
- Gatan2IO()
: EMAN::Gatan2IO
- GatanDataType
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- gatanh
: EMAN::Gatan2IO
- GAUSS_BAND_PASS
: EMAN::Processor
- GAUSS_HIGH_PASS
: EMAN::Processor
- GAUSS_HOMOMORPHIC
: EMAN::Processor
- GAUSS_INVERSE
: EMAN::Processor
- GAUSS_LOW_PASS
: EMAN::Processor
- gauss_width
: EMAN::MaskGaussNonuniformProcessor
- GaussFFTProjector()
: EMAN::GaussFFTProjector
- Gaussian()
: EMAN::Util::Gaussian, Gaussian
- GaussianFunctoid()
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- gen_gl_texture()
: EMAN::GLUtil
- gen_glu_mipmaps()
: EMAN::GLUtil
- gen_orientations()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::Symmetry3D
- generate_machine_stamp()
: EMAN::MrcIO, EMAN::ImagicIO2
- generateRadialColorMap()
: EMAN::ColorRGBGenerator
- generatesubmax()
: EMAN::Util
- get()
: EMAN::Factory< T >, EMAN::Dict, EMAN::EMCache< T >
- get_2dcview()
: EMAN::EMData
- get_2dview()
: EMAN::EMData
- get_3dcview()
: EMAN::EMData
- get_3dcviewptr()
: EMAN::EMData
- get_3dview()
: EMAN::EMData
- get_all_attributes()
: EMAN::EMUtil
- get_amplitude_thres()
: EMAN::EMData
- get_array_offsets()
: EMAN::EMArray< T >, EMAN::EMData
- get_asym_unit_points()
: EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_asym_unit_triangles()
: EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_atomName()
: EMAN::PDBReader
- get_attr()
: EMAN::EMData
- get_attr_default()
: EMAN::EMData
- get_attr_dict()
: EMAN::EMData
- get_az_alignment_offset()
: EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::TetrahedralSym, EMAN::Symmetry3D
- get_az_delta()
: EMAN::EmanOrientationGenerator
- get_az_max()
: EMAN::OrientationGenerator
- get_background()
: EMAN::EMAN2Ctf
- get_bfactor()
: EMAN::EMAN1Ctf
- get_biggest_cluster()
: EMAN::Util
- get_bounding_box()
: EMAN::PointArray
- get_center()
: EMAN::PointArray
- get_changecount()
: EMAN::EMData
- get_ci()
: EMAN::Dict
- get_circle_mean()
: EMAN::EMData
- get_clip()
: EMAN::EMData
- get_clip_region()
: EMAN::IntTranslateProcessor
- get_col()
: EMAN::EMData
- get_color()
: EMAN::BoxingTools
- get_complex_at()
: EMAN::EMData
- get_complex_index()
: EMAN::EMData
- get_complex_index_fast()
: EMAN::EMData
- get_const_data()
: EMAN::EMData
- get_CTF()
: AlignOptions
- get_ctf()
: ctf_store_new, ctf_store, EMAN::EMData
- get_data()
: EMAN::CustomVector< type >, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_data_as_vector()
: EMAN::EMData
- get_data_pickle()
: EMAN::EMData
- get_datasettype_from_name()
: EMAN::VtkIO
- get_datatype()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_datatype_from_name()
: EMAN::VtkIO, EMAN::ImagicIO2, EMAN::ImagicIO
- get_datatype_size()
: EMAN::ImagicIO2, EMAN::ImagicIO
- get_datatype_string()
: EMAN::EMUtil
- get_debug_float()
: EMAN::TestUtil
- get_debug_image()
: EMAN::TestUtil
- get_debug_int()
: EMAN::TestUtil
- get_debug_string()
: EMAN::TestUtil
- get_debug_transform()
: EMAN::TestUtil
- get_defocus()
: EMAN::EMAN1Ctf
- get_delimiters()
: EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_depth()
: EMAN::Region, EMAN::EMFTGL
- get_desc()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::AreaProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::TypeDict, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_determinant()
: EMAN::Transform
- get_double()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_dtheta()
: AlignOptions
- get_edge_mean()
: EMAN::EMData
- get_edge_num()
: EMAN::MarchingCubes
- get_emdata()
: EMAN::ReconstructorVolumeData, wustl_mm::SkeletonMaker::VolumeData, wustl_mm::SkeletonMaker::Volume
- get_entry_id()
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- get_euler_names()
: EMAN::EMUtil
- get_face_size()
: EMAN::EMFTGL
- get_fft_amplitude()
: EMAN::EMData
- get_fft_amplitude2D()
: EMAN::EMData
- get_fft_phase()
: EMAN::EMData
- get_filename_ext()
: EMAN::Util
- get_first_ring()
: AlignOptions
- get_flags()
: EMAN::EMData
- get_float()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_font()
: EMAN::EMFTGL::EMFTGLManager, EMAN::EMFTGL::EMFTGLFontInstance
- get_font_file_name()
: EMAN::EMFTGL
- get_font_mode()
: EMAN::EMFTGL
- get_frand()
: EMAN::Util, EMAN::Randnum
- get_frand_pos()
: EMAN::Randnum
- get_gauss_rand()
: EMAN::Util, EMAN::Randnum
- get_gimx()
: EMAN::Interp
- get_golden_image()
: EMAN::TestUtil
- get_group_desc()
: EMAN::NewFourierProcessor, EMAN::TestImageProcessor, EMAN::NormalizeProcessor, EMAN::BoxStatProcessor, EMAN::ComplexPixelProcessor, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::ImageProcessor, EMAN::Processor
- get_have_angles()
: AlignOptions
- get_height()
: EMAN::Region
- get_hflip_transform()
: EMAN::Transform
- get_hyperg()
: EMAN::Interp
- get_image()
: EMAN::file_store, EMAN::newfile_store
- get_image_count()
: EMAN::EMUtil
- get_image_ext_type()
: EMAN::EMUtil
- get_image_type()
: EMAN::EMUtil
- get_imageio()
: EMAN::EMUtil, EMAN::GlobalCache
- get_imagetype_name()
: EMAN::EMUtil
- get_index()
: EMAN::ImageSort
- get_int()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_irand()
: EMAN::Util, EMAN::Randnum
- get_isosurface()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_isosurface_dl()
: EMAN::GLUtil
- get_kbi0_win()
: EMAN::Util::KaiserBessel, KaiserBessel
- get_kbsinh_win()
: EMAN::Util::KaiserBessel, KaiserBessel
- get_last_ring()
: AlignOptions
- get_line_from_string()
: EMAN::Util
- get_list()
: EMAN::Factory< T >
- get_machine_type()
: EMAN::EmIO
- get_mask3D()
: AlignOptions
- get_matrix()
: EMAN::Transform
- get_matrix3_row()
: EMAN::Transform
- get_matrix_4x4()
: EMAN::Transform
- get_max()
: EMAN::Util
- get_max_csym()
: EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_maxit()
: AlignOptions
- get_maxy()
: EMAN::XYData
- get_min()
: EMAN::Util
- get_min_delta_profile()
: EMAN::BoxingTools
- get_miny()
: EMAN::XYData
- get_mirror()
: EMAN::Transform
- get_mode_size()
: EMAN::VtkIO, EMAN::PifIO, EMAN::MrcIO, EMAN::FitsIO, EMAN::EmIO
- get_name()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_ndim()
: EMAN::Region, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMAN::EMData
- get_nimg()
: EMAN::SpiderIO, EMAN::SerIO, EMAN::XYZIO, EMAN::PifIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::EmimIO
- get_normal()
: EMAN::MarchingCubes
- get_nsym()
: EMAN::Transform, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_number_points()
: EMAN::PointArray, EMAN::PDBReader
- get_object_type_name()
: EMAN::EMObject
- get_offset()
: EMAN::MarchingCubes
- get_optimal_delta()
: EMAN::OrientationGenerator
- get_orientations_tally()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator
- get_origin()
: EMAN::Region
- get_param_types()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewFourierProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierPixelInserter3D, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeMaskProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::BeamstopProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::BoxStatProcessor, EMAN::AreaProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::ToZeroProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::LowpassAutoBProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::Processor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FactoryBase, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::Cmp, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner, EMAN::Aligner
- get_params()
: EMAN::Transform, EMAN::Projector, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::Analyzer, EMAN::Aligner
- get_params_inverse()
: EMAN::Transform
- get_path()
: EMAN::EMData
- get_pathnum()
: EMAN::EMData
- get_pixel_conv()
: EMAN::EMData
- get_pixel_conv7()
: EMAN::EMData
- get_pixel_conv_new()
: EMAN::Util
- get_pixel_conv_new_background()
: EMAN::Util
- get_pixel_filtered()
: EMAN::EMData
- get_pixel_value_by_dist1()
: EMAN::TestUtil
- get_pixel_value_by_dist2()
: EMAN::TestUtil
- get_point()
: EMAN::Pixel
- get_points()
: EMAN::PointArray, EMAN::PDBReader
- get_points_array()
: EMAN::PointArray, EMAN::PDBReader
- get_pow()
: EMAN::EMData
- get_pre_trans()
: EMAN::Transform
- get_pre_trans_2d()
: EMAN::Transform
- get_randnum_seed()
: EMAN::Util
- get_ref_angle_type()
: AlignOptions
- get_region_dims()
: EMAN::EMUtil
- get_region_origins()
: EMAN::EMUtil
- get_resName()
: EMAN::PDBReader
- get_resNum()
: EMAN::PDBReader
- get_ri()
: AlignOptions
- get_rotated_clip()
: EMAN::EMData
- get_rotation()
: EMAN::Transform
- get_rotation_transform()
: EMAN::Transform
- get_row()
: EMAN::EMData
- get_rstep()
: AlignOptions
- get_sampling()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sampling_range()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sB_size()
: EMAN::Util::sincBlackman, sincBlackman
- get_scale()
: EMAN::Transform, EMAN::OptVarianceCmp
- get_scale_and_mirror()
: EMAN::Transform
- get_score()
: EMAN::ImageSort
- get_seed()
: EMAN::Randnum
- get_shift()
: EMAN::OptVarianceCmp
- get_sigma()
: EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor
- get_sirt_lam()
: AlignOptions
- get_sirt_maxit()
: AlignOptions
- get_sirt_tol()
: AlignOptions
- get_size()
: EMAN::XYData, EMAN::UnevenMatrix, EMAN::Region, EMAN::EMData, EMAN::EMCache< T >
- get_slice()
: EMAN::Util
- get_snr()
: AlignOptions, EMAN::EMAN2Ctf
- get_start_val()
: EMAN::MinShrinkProcessor::LessThan, EMAN::MaxShrinkProcessor::GreaterThan
- get_stats()
: EMAN::Util
- get_stats_cstyle()
: EMAN::Util
- get_step()
: AlignOptions
- get_str_float()
: EMAN::Util
- get_str_int()
: EMAN::Util
- get_string()
: EMAN::Region, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_supp_pickle()
: EMAN::EMData
- get_surface_value()
: EMAN::MarchingCubes, EMAN::Isosurface
- get_sym()
: EMAN::Transform, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- get_sym_proj()
: EMAN::Transform
- get_symmetries()
: EMAN::Symmetry3D
- get_symmetry()
: AlignOptions
- get_syms()
: EMAN::Symmetry3D
- get_time_label()
: EMAN::Util
- get_top_half()
: EMAN::EMData
- get_touching_au_transforms()
: EMAN::Symmetry3D
- get_trans()
: EMAN::Transform
- get_trans_2d()
: EMAN::Transform
- get_transform()
: EMAN::EMData
- get_transform_params()
: EMAN::Util
- get_translation()
: EMAN::EMData
- get_type()
: EMAN::TypeDict, EMAN::EMObject
- get_type_string()
: EMAN::EMObject
- get_use_sirt()
: AlignOptions
- get_using_display_lists()
: EMAN::EMFTGL
- get_vals()
: EMAN::PCA
- get_value()
: EMAN::Pixel
- get_value_at()
: EMAN::PointArray, EMAN::EMData
- get_value_at_index()
: EMAN::EMData
- get_value_at_wrap()
: EMAN::EMData
- get_vecs()
: EMAN::PCA
- get_vector_at()
: EMAN::PointArray
- get_vflip_transform()
: EMAN::Transform
- get_width()
: EMAN::Region
- get_window_size()
: EMAN::Util::KaiserBessel::kbi0_win, EMAN::Util::KaiserBessel::kbsinh_win, EMAN::Util::KaiserBessel, KaiserBessel::kbi0_win, KaiserBessel::kbsinh_win, KaiserBessel
- get_x()
: EMAN::XYData, EMAN::PDBReader
- get_xlist()
: EMAN::XYData
- get_xmax()
: EMAN::UnevenMatrix
- get_xmin()
: EMAN::UnevenMatrix
- get_xoff()
: EMAN::EMData
- get_xrng()
: AlignOptions
- get_xsize()
: EMAN::EMArray< T >, EMAN::UnevenMatrix, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_y()
: EMAN::XYData, EMAN::PDBReader
- get_yatx()
: EMAN::XYData
- get_ylist()
: EMAN::XYData
- get_yoff()
: EMAN::EMData
- get_yrng()
: AlignOptions
- get_ysize()
: EMAN::EMArray< T >, EMAN::EMData, EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- get_z()
: EMAN::PDBReader
- get_zoff()
: EMAN::EMData
- get_zsize()
: EMAN::EMArray< T >, EMAN::EMData
- getBaldwinGridWeights()
: EMAN::Util
- getconvpt2d_kbi0()
: EMAN::EMData
- getDataAt()
: wustl_mm::SkeletonMaker::Volume
- GetDataAt()
: wustl_mm::SkeletonMaker::VolumeData
- getDistances()
: EMAN::BoxSVDClassifier
- getHead()
: wustl_mm::SkeletonMaker::GridQueue
- getIndex()
: wustl_mm::SkeletonMaker::Volume
- GetIndex()
: wustl_mm::SkeletonMaker::VolumeData
- getIterativeCluster()
: EMAN::BoxSVDClassifier
- GetJuCurveSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuSurfaceSkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuThinning()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- GetJuTopologySkeleton()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- getLength()
: EMAN::PriorityQueue< ValueT, KeyT >
- getMapping()
: EMAN::BoxSVDClassifier
- GetMaxIndex()
: wustl_mm::SkeletonMaker::VolumeData
- getNeedToRecolor()
: EMAN::ColorRGBGenerator
- getNext()
: wustl_mm::SkeletonMaker::GridQueue2
- getnnz()
: EMAN::ChaoProjector
- getNumElements()
: wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- getNumNeighbor6()
: wustl_mm::SkeletonMaker::Volume
- getNumPotComplex()
: wustl_mm::SkeletonMaker::Volume
- getNumPotComplex2()
: wustl_mm::SkeletonMaker::Volume
- GetOrigin()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginX()
: wustl_mm::SkeletonMaker::Volume
- GetOriginX()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginY()
: wustl_mm::SkeletonMaker::Volume
- GetOriginY()
: wustl_mm::SkeletonMaker::VolumeData
- GetOriginZ()
: wustl_mm::SkeletonMaker::VolumeData
- getOriginZ()
: wustl_mm::SkeletonMaker::Volume
- getRenderMinMax()
: EMAN::EMUtil
- getResolution()
: EMAN::EMData
- getRGBColor()
: EMAN::ColorRGBGenerator
- getRGBmode()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator
- GetSize()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeX()
: wustl_mm::SkeletonMaker::Volume
- GetSizeX()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeY()
: wustl_mm::SkeletonMaker::Volume
- GetSizeY()
: wustl_mm::SkeletonMaker::VolumeData
- getSizeZ()
: wustl_mm::SkeletonMaker::Volume
- GetSizeZ()
: wustl_mm::SkeletonMaker::VolumeData
- GetSpacing()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingX()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingX()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingY()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingY()
: wustl_mm::SkeletonMaker::VolumeData
- getSpacingZ()
: wustl_mm::SkeletonMaker::Volume
- GetSpacingZ()
: wustl_mm::SkeletonMaker::VolumeData
- getvec()
: EMAN::Util
- getVolumeData()
: wustl_mm::SkeletonMaker::Volume
- gimx
: EMAN::Interp
- glDrawBoundingBox()
: EMAN::GLUtil
- glDrawDisk()
: EMAN::GLUtil
- glLoadMatrix()
: EMAN::GLUtil
- glMultMatrix()
: EMAN::GLUtil
- global_cache
: EMAN::GlobalCache
- GlobalCache()
: EMAN::GlobalCache
- globalinit()
: EMAN::V4L2IO
- GLUtil
: EMAN::MarchingCubes, EMAN::EMData
- go()
: EMAN::BoxSVDClassifier
- goodf()
: EMAN::Util
- GridQueue()
: wustl_mm::SkeletonMaker::GridQueue
- GridQueue2()
: wustl_mm::SkeletonMaker::GridQueue2
- group_proj_by_phitheta()
: EMAN::Util
- GROUP_TAG
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- hans()
: EMAN::Util
- has_attr()
: EMAN::EMData
- has_ctff()
: EMAN::EMData
- has_key()
: EMAN::Dict
- has_key_ci()
: EMAN::Dict
- hasCell()
: wustl_mm::SkeletonMaker::Volume
- hasCompleteHelix()
: wustl_mm::SkeletonMaker::Volume
- hasCompleteSheet()
: wustl_mm::SkeletonMaker::Volume
- have_angles
: AlignOptions
- hdr
: BPKT
- HDR_EXT
: EMAN::SalIO
- head
: EMAN::PDBReader, wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- head_length
: EMAN::LstFastIO
- header10
: EMAN::OmapIO::OmapHeader
- header11
: EMAN::OmapIO::OmapHeader
- header12
: EMAN::OmapIO::OmapHeader
- headlen
: EMAN::SpiderIO::SpiderHeader, EMAN::EmimIO::EmimFileHeader
- headrec
: EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- HED_EXT
: EMAN::ImagicIO2, EMAN::ImagicIO
- hed_file
: EMAN::ImagicIO2, EMAN::ImagicIO
- hed_filename
: EMAN::ImagicIO2, EMAN::ImagicIO
- helicise()
: EMAN::EMData
- helicise_grid()
: EMAN::EMData
- hi_brid()
: EMAN::BoxingTools
- high
: EMAN::RangeThresholdProcessor, EMAN::ExpProcessor
- highpass
: EMAN::HighpassAutoPeakProcessor
- hist_comp_freq()
: EMAN::Util
- histc()
: EMAN::Util
- histogram()
: EMAN::Util
- HistogramBin()
: EMAN::HistogramBin
- history
: EMAN::ImagicIO2::Imagic4D
- host_big_endian
: EMAN::ByteOrder
- hour
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- hsortd()
: EMAN::Util
- HSym()
: EMAN::HSym
- ht
: EMAN::MrcIO::FeiMrcExtHeader
- htype
: EMAN::PifIO::PifFileHeader
- hyperg()
: EMAN::Interp
- HYPERGEOM
: EMAN::Interp
- hypot2()
: EMAN::Util
- hypot3()
: EMAN::Util
- hypot3sq()
: EMAN::Util
- hypot_fast()
: EMAN::Util
- hypot_fast_int()
: EMAN::Util
- i
: ccf_point, d_ang
- i0table
: EMAN::Util::KaiserBessel, KaiserBessel
- I0table_maxerror()
: EMAN::Util::KaiserBessel, KaiserBessel
- i0win()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- i0win_tab()
: EMAN::Util::KaiserBessel, KaiserBessel
- I16
: EMAN::U3DWriter
- I2G
: EMAN::EMConsts
- I3G
: EMAN::EMConsts
- I4G
: EMAN::EMConsts
- i4lp
: EMAN::ImagicIO2::Imagic4D
- I5G
: EMAN::EMConsts
- i5lp
: EMAN::ImagicIO2::Imagic4D
- i6lp
: EMAN::ImagicIO2::Imagic4D
- iarray
: EMAN::EMObject
- iblp
: EMAN::ImagicIO::ImagicHeader
- ibsd
: EMAN::ImagicIO::ImagicHeader
- icend
: EMAN::ImagicIO::ImagicHeader
- icos_5_to_2()
: EMAN::Transform
- icos_file
: EMAN::IcosIO
- Icosahedral2Sym()
: EMAN::Icosahedral2Sym
- IcosahedralSym()
: EMAN::IcosahedralSym
- icosh
: EMAN::IcosIO
- IcosIO()
: EMAN::IcosIO
- icstart
: EMAN::ImagicIO::ImagicHeader
- id
: ori_t, EMAN::EmimIO::EmimImageHeader
- identity()
: EMAN::Matrix4, EMAN::Matrix3
- idtype
: EMAN::MrcIO::FeiMrcHeader
- iend
: EMAN::ImagicIO::ImagicHeader
- ifb
: EMAN::ImagicIO::ImagicHeader
- ifix()
: EMAN::ChaoProjector
- ignore0
: EMAN::ImageAverager
- ihfl
: EMAN::ImagicIO::ImagicHeader
- ihist
: EMAN::SpiderIO::SpiderHeader
- im_diff()
: EMAN::Util
- imag
: EMAN::EMData, EMAN::point_t
- image
: EMAN::ReconstructorVolumeData, EMAN::XYZReconstructor
- IMAGE_2D
: EMAN::SpiderIO
- IMAGE_2D_FFT_EVEN
: EMAN::SpiderIO
- IMAGE_2D_FFT_ODD
: EMAN::SpiderIO
- IMAGE_3D
: EMAN::SpiderIO
- IMAGE_3D_FFT_EVEN
: EMAN::SpiderIO
- IMAGE_3D_FFT_ODD
: EMAN::SpiderIO
- IMAGE_AMIRA
: EMAN::EMUtil
- IMAGE_DATATYPE_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_DF3
: EMAN::EMUtil
- IMAGE_DM3
: EMAN::EMUtil
- IMAGE_DM4
: EMAN::EMUtil
- IMAGE_EM
: EMAN::EMUtil
- IMAGE_EMIM
: EMAN::EMUtil
- IMAGE_FITS
: EMAN::EMUtil
- IMAGE_GATAN2
: EMAN::EMUtil
- IMAGE_HDF
: EMAN::EMUtil
- IMAGE_HEIGHT_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_ICOS
: EMAN::EMUtil
- IMAGE_IMAGIC
: EMAN::EMUtil
- IMAGE_JPEG
: EMAN::EMUtil
- IMAGE_LST
: EMAN::EMUtil
- IMAGE_LSTFAST
: EMAN::EMUtil
- IMAGE_MRC
: EMAN::EMUtil
- image_mutation()
: EMAN::Util
- IMAGE_OMAP
: EMAN::EMUtil
- IMAGE_PGM
: EMAN::EMUtil
- IMAGE_PIF
: EMAN::EMUtil
- IMAGE_PNG
: EMAN::EMUtil
- IMAGE_SAL
: EMAN::EMUtil
- image_scores
: EMAN::ImageSort
- IMAGE_SER
: EMAN::EMUtil
- IMAGE_SINGLE_SPIDER
: EMAN::EMUtil
- IMAGE_SITUS
: EMAN::EMUtil
- IMAGE_SPIDER
: EMAN::EMUtil
- image_stack
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- image_stack_filtered
: EMAN::CUDA_Aligner
- IMAGE_THUMB_INDEX_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_TIFF
: EMAN::EMUtil
- IMAGE_UNKNOWN
: EMAN::EMUtil
- IMAGE_V4L
: EMAN::EMUtil
- IMAGE_VTK
: EMAN::EMUtil
- IMAGE_WIDTH_TAG
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- IMAGE_XPLOR
: EMAN::EMUtil
- ImageAverager()
: EMAN::ImageAverager
- imageio
: EMAN::LstIO, EMAN::LstFastIO
- imageio_cache
: EMAN::GlobalCache
- imagenum
: EMAN::PifIO::PifImageHeader
- images
: EMAN::Analyzer
- ImageScore()
: EMAN::ImageScore
- ImageSort()
: EMAN::ImageSort
- ImageType
: EMAN::EMUtil
- IMAGIC_CHAR
: EMAN::ImagicIO2
- IMAGIC_FFT_FLOAT_COMPLEX
: EMAN::ImagicIO2, EMAN::ImagicIO
- IMAGIC_FLOAT
: EMAN::ImagicIO2, EMAN::ImagicIO
- IMAGIC_FLOAT_COMPLEX
: EMAN::ImagicIO2, EMAN::ImagicIO
- IMAGIC_SHORT
: EMAN::ImagicIO2
- IMAGIC_UCHAR
: EMAN::ImagicIO
- IMAGIC_UNKNOWN_TYPE
: EMAN::ImagicIO2, EMAN::ImagicIO
- IMAGIC_USHORT
: EMAN::ImagicIO
- imagich
: EMAN::ImagicIO2, EMAN::ImagicIO
- ImagicIO()
: EMAN::ImagicIO
- ImagicIO2()
: EMAN::ImagicIO2
- imavers
: EMAN::ImagicIO2::Imagic4D
- imax
: EMAN::OmapIO::OmapHeader
- imean
: EMAN::OmapIO::OmapHeader
- IMG_EXT
: EMAN::SalIO, EMAN::ImagicIO2, EMAN::ImagicIO
- img_file
: EMAN::ImagicIO2, EMAN::ImagicIO
- img_filename
: EMAN::ImagicIO2, EMAN::ImagicIO
- img_index
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- imgnum
: EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- imin
: EMAN::OmapIO::OmapHeader
- imstr
: EMAN::ImagicIO::ImagicHeader
- imstw
: EMAN::ImagicIO::ImagicHeader
- in
: EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- in_which_asym_unit()
: EMAN::Symmetry3D
- index
: EMAN::Matrix4, EMAN::Matrix3, EMAN::ImageScore
- infomask()
: EMAN::Util
- informat
: EMAN::ImagicIO2::Imagic4D
- init()
: EMAN::PlatonicSym, ctf_store_new, ctf_store, EMAN::FourierInserter3DMode8, EMAN::FourierPixelInserter3D, EMAN::ImageIO, EMAN::Factory< T >, EMAN::EMObject
- init_gimx()
: EMAN::Interp
- init_permissable_keys()
: EMAN::Transform
- init_test()
: EMAN::ImagicIO2
- initial_prune()
: EMAN::Util
- initialized
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- InitializeVolumeData()
: wustl_mm::SkeletonMaker::VolumeData
- inn
: EMAN::ImagicIO::ImagicHeader
- inner
: EMAN::ColorRGBGenerator
- inner_radius
: EMAN::CircularMaskProcessor
- inner_radius_square
: EMAN::CircularMaskProcessor
- insert_buffed_slice()
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- insert_clip()
: EMAN::EMData
- insert_hollow_ellipse()
: EMAN::TestTomoImage
- insert_image()
: EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- insert_images_list()
: EMAN::SVDAnalyzer, EMAN::Analyzer
- insert_padfft_slice()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- insert_params()
: EMAN::FactoryBase
- insert_pixel()
: EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::FourierPixelInserter3D
- insert_rect_slice()
: EMAN::EMData
- insert_rect_slice_ctf()
: EMAN::EMData
- insert_rect_slice_ctf_applied()
: EMAN::EMData
- insert_rectangle()
: EMAN::TestTomoImage
- insert_ref_image()
: EMAN::CUDA_multiref_aligner
- insert_scaled_sum()
: EMAN::EMData
- insert_slice()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor
- insert_solid_ellipse()
: EMAN::TestTomoImage
- inserter
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- inside_region()
: EMAN::Region
- Instance()
: EMAN::Randnum
- instance
: EMAN::GlobalCache, EMAN::Log
- InstanceType
: EMAN::Factory< T >
- INT
: EMAN::VtkIO, EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- int2str()
: EMAN::Util
- INT_POINTER
: EMAN::EMObject
- INTARRAY
: EMAN::EMObject
- INTEGER_SIZE
: EMAN::XplorIO
- intercept
: EMAN::LinearRampProcessor
- interp_ft_3d()
: EMAN::GaussFFTProjector
- interpolate()
: EMAN::Quaternion
- IntPoint()
: EMAN::IntPoint
- IntSize()
: EMAN::IntSize
- inuse
: EMAN::SpiderIO::SpiderHeader
- inverse()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Transform, EMAN::Quaternion
- invert()
: EMAN::Transform
- IOMode
: EMAN::ImageIO
- ip
: EMAN::EMObject
- iphi
: ori_t
- iplus
: EMAN::OmapIO::OmapHeader
- iprod
: EMAN::OmapIO::OmapHeader
- irec
: EMAN::SpiderIO::SpiderHeader
- is_big_endian
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::GatanDM4::TagTable, EMAN::DM3IO, EMAN::Gatan::TagTable, EMAN::AmiraIO
- is_c_sym()
: EMAN::CSym, EMAN::Symmetry3D
- is_complex
: EMAN::EMData, EMAN::CoordinateProcessor
- is_complex_mode()
: EMAN::ImageIO
- is_complex_type()
: EMAN::EMUtil
- is_complex_x()
: EMAN::EMData
- is_d_sym()
: EMAN::DSym, EMAN::Symmetry3D
- is_data_big_endian()
: EMAN::ByteOrder
- is_fftodd()
: EMAN::EMData
- is_fftpadded()
: EMAN::EMData
- is_FH()
: EMAN::EMData
- is_file_exist()
: EMAN::Util
- is_flipped()
: EMAN::EMData
- is_float_big_endian()
: EMAN::ByteOrder
- is_float_int()
: EMAN::PifIO
- is_h_sym()
: EMAN::HSym, EMAN::Symmetry3D
- is_host_big_endian()
: EMAN::ByteOrder
- is_host_endian_checked
: EMAN::ByteOrder
- is_identity()
: EMAN::Transform
- is_image_big_endian()
: EMAN::ImageIO
- is_in_asym_unit()
: EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D
- is_local_maximum()
: EMAN::BoxingTools
- is_new_file
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::PifIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::IcosIO, EMAN::FitsIO, EMAN::EmIO, EMAN::Df3IO
- is_new_hed
: EMAN::ImagicIO2, EMAN::ImagicIO
- is_new_img
: EMAN::ImagicIO2, EMAN::ImagicIO
- is_new_ver
: EMAN::EmIO::EMHeader
- is_null()
: EMAN::EMObject
- is_platonic_sym()
: EMAN::PlatonicSym, EMAN::Symmetry3D
- is_real()
: EMAN::EMData
- is_region_in_box()
: EMAN::Region
- is_ri
: EMAN::EMData, EMAN::MrcIO
- is_rot_identity()
: EMAN::Transform
- is_same_ctf()
: EMAN::EMUtil
- is_same_size()
: EMAN::EMUtil
- is_shuffled()
: EMAN::EMData
- is_single_image_format()
: EMAN::SingleSpiderIO, EMAN::SpiderIO, EMAN::PifIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::EmimIO
- is_tet_sym()
: EMAN::TetrahedralSym, EMAN::Symmetry3D
- is_transpose
: EMAN::MrcIO
- is_valid()
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::SingleSpiderIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- is_valid_filename()
: EMAN::EMUtil
- is_valid_spider()
: EMAN::SingleSpiderIO, EMAN::SpiderIO
- is_validx()
: EMAN::XYData
- isEmpty()
: EMAN::PriorityQueue< ValueT, KeyT >
- isFeatureFace()
: wustl_mm::SkeletonMaker::Volume
- isFEI
: EMAN::MrcIO
- isFull()
: EMAN::PriorityQueue< ValueT, KeyT >
- isHelixEnd()
: wustl_mm::SkeletonMaker::Volume
- isigma
: EMAN::OmapIO::OmapHeader
- iskip
: APMDopt
- Isosurface()
: EMAN::Isosurface
- ispg
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- isPiercable()
: wustl_mm::SkeletonMaker::Volume
- IsPower2()
: EMAN::Util
- isSheetEnd()
: wustl_mm::SkeletonMaker::Volume
- isSimple()
: wustl_mm::SkeletonMaker::Volume
- istack
: EMAN::SpiderIO::SpiderHeader
- istart
: EMAN::ImagicIO::ImagicHeader
- istep
: APMQopt
- item_cache
: EMAN::EMCache< T >
- IterationAverager()
: EMAN::IterationAverager
- iterator()
: EMAN::Dict::iterator
- iterator_category
: EMAN::Dict::const_iterator, EMAN::Dict::iterator
- itht
: ori_t
- ixold
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- iyold
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- izlp
: EMAN::ImagicIO2::Imagic4D
- izold
: EMAN::ImagicIO2::Imagic4D
- k
: ccf_point
- K
: EMAN::Util::KaiserBessel, KaiserBessel
- k_means_cont_table_()
: EMAN::Util
- KAISER_I0
: EMAN::Processor
- KAISER_I0_INVERSE
: EMAN::Processor
- KAISER_SINH
: EMAN::Processor
- KAISER_SINH_INVERSE
: EMAN::Processor
- KaiserBessel()
: EMAN::Util::KaiserBessel, KaiserBessel
- Kangle
: EMAN::SpiderIO::SpiderHeader
- kb
: EMAN::Util::KaiserBessel::kbi0_win, EMAN::Util::KaiserBessel::kbsinh_win, KaiserBessel::kbi0_win, KaiserBessel::kbsinh_win
- kbi0_win()
: EMAN::Util::KaiserBessel::kbi0_win, KaiserBessel::kbi0_win
- kbsinh_win()
: EMAN::Util::KaiserBessel::kbsinh_win, KaiserBessel::kbsinh_win
- kernel
: EMAN::AreaProcessor
- key1
: EMAN::Util::tmpstruct, tmpstruct
- keyQueue
: EMAN::PriorityQueue< ValueT, KeyT >
- keys()
: EMAN::Dict, EMAN::TypeDict
- KMEANS
: EMAN::PointArray, EMAN::PDBReader
- KMeansAnalyzer()
: EMAN::KMeansAnalyzer
- KX
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- KY
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- label
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- labels
: EMAN::MrcIO::MrcHeader
- labl
: EMAN::MrcIO::FeiMrcHeader
- Lanczos()
: EMAN::PCA, EMAN::PCAlarge
- Lanczos_ooc()
: EMAN::PCA
- LAST_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- last_lst_index
: EMAN::LstIO, EMAN::LstFastIO
- last_ref_index
: EMAN::LstIO, EMAN::LstFastIO
- last_ring
: AlignOptions
- lastindx
: EMAN::SpiderIO::SpiderHeader
- lastlr
: EMAN::ImagicIO::ImagicHeader
- lastlw
: EMAN::ImagicIO::ImagicHeader
- lbr
: EMAN::ImagicIO::ImagicHeader
- lbuf
: EMAN::ImagicIO::ImagicHeader
- lbw
: EMAN::ImagicIO::ImagicHeader
- lcbr
: EMAN::ImagicIO::ImagicHeader
- lcbw
: EMAN::ImagicIO::ImagicHeader
- leff
: EMAN::ImagicIO::ImagicHeader
- len
: BPKT, EMAN::Gatan2IO::Gatan2Header
- length
: EMAN::Vector4, EMAN::Vector3, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, methodName
- lengthSquared()
: EMAN::Vector4, EMAN::Vector3, EMAN::ScreenVector
- lens
: EMAN::MrcIO::FeiMrcHeader
- linbuf
: EMAN::ImagicIO::ImagicHeader
- LINE_LENGTH
: EMAN::SitusIO
- line_length
: EMAN::LstFastIO
- linear_interpolate()
: EMAN::Util
- LinearRampProcessor()
: EMAN::LinearRampProcessor
- LinearXformProcessor()
: EMAN::LinearXformProcessor
- linenum
: EMAN::E2Exception
- lines
: EMAN::PDBReader
- LINUX_WINDOWS
: EMAN::ImagicIO2
- list_mutation()
: EMAN::Util
- little_big_dot()
: EMAN::EMData
- load_default_settings()
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- load_inserter()
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor
- loc
: EMAN::Log, EMAN::PawelProjector::IPCube
- location
: EMAN::Log
- locold
: EMAN::ImagicIO2::Imagic4D
- log()
: EMAN::EMData
- Log()
: EMAN::Log
- log10()
: EMAN::EMData
- log2()
: EMAN::PolarData
- log_level
: EMAN::Log
- LoGFourierProcessor()
: EMAN::LoGFourierProcessor
- logger()
: EMAN::Log
- LogLevel
: EMAN::Log
- LONG
: EMAN::VtkIO
- low
: EMAN::RangeThresholdProcessor, EMAN::ExpProcessor
- lsfit()
: EMAN::Util
- lst_file
: EMAN::LstIO, EMAN::LstFastIO
- LstFastIO()
: EMAN::LstFastIO
- LstIO()
: EMAN::LstIO
- M
: EMAN::Util::sincBlackman, sincBlackman
- m_amp_contrast
: EMAN::file_store
- m_ampcont
: ctf_store_new, ctf_store
- m_azz
: ctf_store_new, ctf_store
- m_bfactor
: ctf_store_new, ctf_store
- m_bin_file
: EMAN::file_store, EMAN::newfile_store
- m_bin_if
: EMAN::newfile_store
- m_bin_of
: EMAN::newfile_store
- m_bin_ohandle
: EMAN::file_store
- m_count
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_cs
: ctf_store_new, ctf_store
- m_Cs
: EMAN::file_store
- m_ctf
: EMAN::file_store, EMAN::newfile_store
- m_ctf_applied
: EMAN::file_store
- m_data
: EMAN::varimax
- m_defocus
: ctf_store_new, ctf_store
- m_defocuses
: EMAN::file_store
- m_dza
: ctf_store_new, ctf_store
- m_ihandle
: EMAN::file_store
- m_mask
: EMAN::varimax
- m_mean
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- m_ndim
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_nfac
: EMAN::varimax
- m_nlen
: EMAN::varimax
- m_npad
: EMAN::file_store, EMAN::newfile_store, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_nsym
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_offsets
: EMAN::newfile_store
- m_osnr
: EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_phis
: EMAN::file_store
- m_pixel
: ctf_store_new, ctf_store, EMAN::file_store
- m_points
: EMAN::newfile_store
- m_prev
: EMAN::file_store
- m_psis
: EMAN::file_store
- m_sigma_squared
: EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid
- m_sign
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_sizeofprojection
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_snr
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_symmetry
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_thetas
: EMAN::file_store
- m_totsize
: EMAN::file_store
- m_txt_file
: EMAN::file_store, EMAN::newfile_store
- m_txt_of
: EMAN::newfile_store
- m_txt_ohandle
: EMAN::file_store
- m_varsnr
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor
- m_vecsize
: ctf_store_new, ctf_store
- m_vnx
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnxc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnxp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vny
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnyc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnyp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnz
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnzc
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_vnzp
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_voltage
: ctf_store_new, ctf_store, EMAN::file_store
- m_volume
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_weighting
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wghta
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wghtb
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_winsize
: ctf_store_new, ctf_store
- m_winsize2
: ctf_store_new, ctf_store
- m_wptr
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor
- m_wptr2
: EMAN::nnSSNR_ctfReconstructor, EMAN::nnSSNR_Reconstructor
- m_wptr3
: EMAN::nnSSNR_ctfReconstructor
- m_write
: EMAN::file_store
- m_x_out
: EMAN::file_store
- m_xratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_xscale
: EMAN::nn4_rectReconstructor
- m_y_out
: EMAN::file_store
- m_yratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- m_yscale
: EMAN::nn4_rectReconstructor
- m_z_out
: EMAN::file_store
- m_zratio
: EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_rectReconstructor
- machine
: EMAN::EmIO::EMHeader
- machinestamp
: EMAN::MrcIO::MrcHeader
- MachineType
: EMAN::EmIO
- mad_scalar()
: EMAN::Util
- madn_scalar()
: EMAN::Util
- magic
: EMAN::PifIO::PifFileHeader, EMAN::EmimIO::EmimFileHeader
- MAGIC
: EMAN::VtkIO, EMAN::SalIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::EmimIO, EMAN::AmiraIO
- MAGIC_ASCII
: EMAN::PgmIO
- MAGIC_BINARY
: EMAN::PgmIO
- magnification
: EMAN::MrcIO::FeiMrcExtHeader
- make_footprint()
: EMAN::EMData
- make_header_host_endian()
: EMAN::ImagicIO2, EMAN::ImagicIO
- make_image_file()
: EMAN::TestUtil
- make_image_file2()
: EMAN::TestUtil
- make_image_file_by_mode()
: EMAN::TestUtil
- make_image_median()
: EMAN::EMUtil
- make_rotational_footprint()
: EMAN::EMData
- make_rotational_footprint_cmc()
: EMAN::EMData
- make_rotational_footprint_e1()
: EMAN::EMData
- makePointArray()
: EMAN::PDBReader
- map
: EMAN::MrcIO::MrcHeader
- mapabang
: EMAN::PifIO::PifImageHeader
- mapc
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- mapr
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- maps
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- marching_cube()
: EMAN::MarchingCubes
- MarchingCubes()
: EMAN::MarchingCubes
- markCellFace()
: wustl_mm::SkeletonMaker::Volume
- MarkSurfaces()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- mask
: EMAN::PointArray, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer
- mask3D
: AlignOptions
- mask_asymmetric_unit()
: EMAN::PointArray
- mask_contig_region()
: EMAN::EMData
- MaskGaussNonuniformProcessor()
: EMAN::MaskGaussNonuniformProcessor
- MaskSharpProcessor()
: EMAN::MaskSharpProcessor
- mat
: EMAN::Matrix4, EMAN::Matrix3
- match_points()
: EMAN::PointArray
- matrix
: EMAN::Transform
- Matrix3()
: EMAN::Matrix3
- Matrix4()
: EMAN::Matrix4
- matrix_size
: EMAN::AreaProcessor
- max
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::MinMaxAverager
- max2
: EMAN::MrcIO::FeiMrcHeader
- max3
: EMAN::MrcIO::FeiMrcHeader
- max4
: EMAN::MrcIO::FeiMrcHeader
- max_3D_pixel_error()
: EMAN::EMData
- MAX_IMAGE_BATCH
: EMAN::CUDA_multiref_aligner
- maxim
: EMAN::SpiderIO::SpiderHeader
- maximum
: EMAN::ColorRGBGenerator
- maxit
: AlignOptions
- maxiter
: EMAN::KMeansAnalyzer
- maxLength
: EMAN::PriorityQueue< ValueT, KeyT >
- maxval
: EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::PgmIO
- maxvals
: EMAN::MarchingCubes
- mClasses
: EMAN::BoxSVDClassifier
- mColumns
: EMAN::BoxSVDClassifier
- mData
: EMAN::BoxSVDClassifier
- mday
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- mDFreq
: EMAN::FourierInserter3DMode8
- mean
: EMAN::Util, EMAN::SpiderIO::SpiderHeader, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::PifIO::PifImageHeader
- mean_int
: EMAN::MrcIO::FeiMrcExtHeader
- mean_x_spacing
: EMAN::XYData
- merge_peaks()
: EMAN::Util
- mFreqCutoff
: EMAN::FourierInserter3DMode8
- mgnum
: EMAN::EmimIO::EmimImageHeader
- mident
: EMAN::ImagicIO2::Imagic4D
- min
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::AbsMaxMinAverager
- min2
: EMAN::MrcIO::FeiMrcHeader
- min3
: EMAN::MrcIO::FeiMrcHeader
- min4
: EMAN::MrcIO::FeiMrcHeader
- min_dist_four()
: EMAN::Util
- min_dist_real()
: EMAN::Util
- minchange
: EMAN::KMeansAnalyzer
- minimum
: EMAN::ColorRGBGenerator
- mininclass
: EMAN::KMeansAnalyzer
- MinMaxAverager()
: EMAN::MinMaxAverager
- minute
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- minval
: EMAN::PgmIO
- minvals
: EMAN::MarchingCubes
- mirror
: ccf_point, d_ang
- misc
: EMAN::ImagicIO::ImagicHeader, EMAN::EmimIO::EmimFileHeader
- mmvalid
: EMAN::SpiderIO::SpiderHeader
- mode
: APMDopt, APMQopt, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::EmIO, EMAN::EMFTGL, EMAN::BoxingTools
- mode_size
: EMAN::PifIO, EMAN::MrcIO, EMAN::EmIO
- mono()
: EMAN::Util
- month
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- move_points()
: EMAN::Util
- mr
: APMDopt, APMQopt
- mrc1
: EMAN::ImagicIO::ImagicHeader
- mrc2
: EMAN::ImagicIO::ImagicHeader
- MRC_FLOAT
: EMAN::MrcIO
- MRC_FLOAT_COMPLEX
: EMAN::MrcIO
- MRC_LABEL_SIZE
: EMAN::MrcIO
- MRC_NUM_LABELS
: EMAN::MrcIO
- MRC_SHORT
: EMAN::MrcIO
- MRC_SHORT_COMPLEX
: EMAN::MrcIO
- MRC_UCHAR
: EMAN::MrcIO
- MRC_UCHAR3
: EMAN::MrcIO
- MRC_UNKNOWN
: EMAN::MrcIO
- MRC_USHORT
: EMAN::MrcIO
- mrcfile
: EMAN::MrcIO
- mrch
: EMAN::MrcIO
- MrcIO()
: EMAN::MrcIO
- MrcMode
: EMAN::MrcIO
- mrcX
: EMAN::PifIO::PifFileHeader
- mrcY
: EMAN::PifIO::PifFileHeader
- mrcZ
: EMAN::PifIO::PifFileHeader
- mRows
: EMAN::BoxSVDClassifier
- mul_img()
: EMAN::Util
- mul_scalar()
: EMAN::Util
- muln_img()
: EMAN::Util
- mult()
: EMAN::EMData, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::ImageAverager, EMAN::Averager
- mult3()
: EMAN::CustomVector< type >
- mult_complex_efficient()
: EMAN::EMData
- mult_radial()
: EMAN::EMData
- mult_scalar()
: EMAN::Util
- multi_align_error()
: EMAN::Util
- multi_align_error_dfunc()
: EMAN::Util
- multi_align_error_func()
: EMAN::Util
- multi_align_error_func2()
: EMAN::Util
- multiref_ali2d()
: EMAN::CUDA_multiref_aligner
- multiref_peaks_ali2d()
: EMAN::Util
- multiref_peaks_compress_ali2d()
: EMAN::Util
- multiref_polar_ali_2d()
: EMAN::Util
- multiref_polar_ali_2d_delta()
: EMAN::Util
- multiref_polar_ali_2d_local()
: EMAN::Util
- multiref_polar_ali_2d_local_psi()
: EMAN::Util
- multiref_polar_ali_2d_nom()
: EMAN::Util
- multiref_polar_ali_2d_peaklist()
: EMAN::Util
- multiref_polar_ali_helical()
: EMAN::Util
- multiref_polar_ali_helical_90()
: EMAN::Util
- multiref_polar_ali_helical_90_local()
: EMAN::Util
- multiref_polar_ali_helical_local()
: EMAN::Util
- MUTEX_INIT()
: EMAN::Util
- MUTEX_LOCK()
: EMAN::Util
- MUTEX_UNLOCK()
: EMAN::Util
- mx
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- mx_bbox()
: EMAN::GLUtil
- my
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- my_dict
: EMAN::Factory< T >
- my_instance
: EMAN::Factory< T >
- mz
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- N
: EMAN::Util::KaiserBessel, KaiserBessel
- n
: EMAN::PointArray, EMAN::PDBReader, EMAN::ImageSort, EMAN::EMObject
- nalisum
: EMAN::ImagicIO2::Imagic4D
- NAME
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::MinPixelOperator, EMAN::MaxPixelOperator, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner
- name
: EMAN::_UnexpectedBehaviorException, EMAN::_BadAllocException, EMAN::_EmptyContainerException, EMAN::_InvalidParameterException, EMAN::_InvalidCallException, EMAN::_OutofRangeException, EMAN::_InvalidStringException, EMAN::_InvalidValueException, EMAN::_TypeException, EMAN::_NullPointerException, EMAN::_ImageWriteException, EMAN::_ImageReadException, EMAN::_FileAccessException, EMAN::_ImageDimensionException, EMAN::_ImageFormatException, EMAN::_NotExistingObjectException, EMAN::E2Exception, methodName, EMAN::EmimIO::EmimImageHeader, EMAN::EmimIO::EmimFileHeader, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- name_cache
: EMAN::EMCache< T >
- ncflag
: EMAN::ImagicIO::ImagicHeader
- nchanged
: EMAN::KMeansAnalyzer
- ncit
: EMAN::Symmetry3D
- ncls
: EMAN::KMeansAnalyzer
- ncov
: EMAN::PCAlarge, EMAN::PCAsmall
- nd1
: EMAN::MrcIO::FeiMrcHeader
- nd2
: EMAN::MrcIO::FeiMrcHeader
- ndim
: EMAN::FloatPoint, EMAN::IntPoint
- nearest_ang()
: EMAN::Util
- nearest_projected_points()
: EMAN::GLUtil
- nearestk_to_refdir()
: EMAN::Util
- need_swap()
: EMAN::SpiderIO
- needtobind
: EMAN::MarchingCubes
- needtorecolor
: EMAN::ColorRGBGenerator
- negate()
: EMAN::Transform
- NEW()
: EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::SetSFProcessor, EMAN::MatchSFProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddSigmaNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeMaxMinProcessor, EMAN::NormalizeLREdgeMeanProcessor, EMAN::NormalizeCircleMeanProcessor, EMAN::NormalizeEdgeMeanProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeMaskProcessor, EMAN::NormalizeStdProcessor, EMAN::NormalizeUnitSumProcessor, EMAN::NormalizeUnitProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::ZeroConstantProcessor, EMAN::LaplacianProcessor, EMAN::ComplexNormPixel, EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::LinearPyramidProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeFourierProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::LinearRampFourierProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::XYZReconstructor, EMAN::XYZProjector, EMAN::XYZProcessor, EMAN::XYZCmp, EMAN::XYZAverager, EMAN::XYZAligner, EMAN::FRCCmp, EMAN::PhaseCmp, EMAN::OptVarianceCmp, EMAN::QuadMinDotCmp, EMAN::TomoFscCmp, EMAN::TomoCccCmp, EMAN::DotCmp, EMAN::SqEuclideanCmp, EMAN::LodCmp, EMAN::CccCmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::TomoAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::FRM2DAligner, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Refine3DAlignerQuaternion, EMAN::Refine3DAlignerGrid, EMAN::SymAlignProcessorQuat, EMAN::RefineAlignerCG, EMAN::RefineAligner, EMAN::SymAlignProcessor, EMAN::RTFSlowExhaustiveAligner, EMAN::RTFExhaustiveAligner, EMAN::RotateTranslateFlipAlignerPawel, EMAN::RotateTranslateFlipScaleAlignerIterative, EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipScaleAligner, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner, EMAN::RotateTranslateBestAligner, EMAN::RotateTranslateAlignerPawel, EMAN::RotateTranslateScaleAlignerIterative, EMAN::RotateTranslateAlignerIterative, EMAN::RotateTranslateScaleAligner, EMAN::RotateTranslateAligner, EMAN::RotatePrecenterAligner, EMAN::RotationalAlignerIterative, EMAN::RotationalAligner, EMAN::TranslationalAligner, EMAN::ScaleAligner
- new_nx
: EMAN::EMData::ClipInplaceVariables
- new_ny
: EMAN::EMData::ClipInplaceVariables
- new_nz
: EMAN::EMData::ClipInplaceVariables
- new_x_left
: EMAN::EMData::ClipInplaceVariables
- new_x_right
: EMAN::EMData::ClipInplaceVariables
- new_y_back
: EMAN::EMData::ClipInplaceVariables
- new_y_front
: EMAN::EMData::ClipInplaceVariables
- new_z_bottom
: EMAN::EMData::ClipInplaceVariables
- new_z_top
: EMAN::EMData::ClipInplaceVariables
- newfile_store()
: EMAN::newfile_store
- next
: EMAN::MrcIO::FeiMrcHeader, wustl_mm::SkeletonMaker::gridQueueEle
- NFLOAT_PER_LINE
: EMAN::XplorIO, EMAN::SitusIO
- nhalf
: EMAN::ImagicIO::ImagicHeader
- nhistrec
: EMAN::SpiderIO::SpiderHeader
- niactive
: EMAN::ImagicIO2::Imagic4D
- NIMA
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nimages
: EMAN::PCAlarge, EMAN::PCAsmall
- nimg
: EMAN::SerIO, EMAN::PifIO::PifFileHeader, EMAN::LstIO, EMAN::LstFastIO, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::IterationAverager, EMAN::AbsMaxMinAverager, EMAN::MinMaxAverager, EMAN::FourierWeightAverager, EMAN::ImageAverager, EMAN::SVDAnalyzer
- nint180()
: EMAN::Util
- nitems
: EMAN::EMCache< T >
- nlabels
: EMAN::MrcIO::MrcHeader
- nlabl
: EMAN::MrcIO::FeiMrcHeader
- nlines_in_header
: EMAN::XplorIO
- nmetric
: EMAN::ImagicIO2::Imagic4D
- nn
: EMAN::EMData, EMAN::U3DWriter, EMAN::MarchingCubes
- nn4_ctf_rectReconstructor()
: EMAN::nn4_ctf_rectReconstructor
- nn4_ctfReconstructor()
: EMAN::nn4_ctfReconstructor
- nn4_rectReconstructor()
: EMAN::nn4_rectReconstructor
- nn4Reconstructor()
: EMAN::nn4Reconstructor
- nn_ctf()
: EMAN::EMData
- nn_ctf_applied()
: EMAN::EMData
- nn_SSNR()
: EMAN::EMData
- nn_SSNR_ctf()
: EMAN::EMData
- nnSSNR_ctfReconstructor()
: EMAN::nnSSNR_ctfReconstructor
- nnSSNR_Reconstructor()
: EMAN::nnSSNR_Reconstructor
- noise1
: EMAN::EMAN1Ctf
- noise2
: EMAN::EMAN1Ctf
- noise3
: EMAN::EMAN1Ctf
- noise4
: EMAN::EMAN1Ctf
- NON_RASTER_SCAN
: EMAN::SalIO
- nonconvex()
: EMAN::Util
- norm
: EMAN::Quaternion, EMAN::FourierPixelInserter3D
- norm_image
: EMAN::TomoAverager
- norm_pad()
: EMAN::EMData
- normalize()
: EMAN::Vector4, EMAN::Vector3, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Quaternion, EMAN::RealPixelProcessor
- Normalize_ring()
: EMAN::Util
- normalize_threed()
: EMAN::ReconstructorVolumeData
- normimage
: EMAN::FourierWeightAverager, EMAN::ImageAverager
- not_used1
: EMAN::EmIO::EMHeader
- nparm
: EMAN::EmimIO::EmimImageHeader
- npeaks
: EMAN::PeakOnlyProcessor
- nr
: APMDopt, APMQopt
- NREF
: EMAN::CUDA_multiref_aligner
- NRING
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nrow
: EMAN::SpiderIO::SpiderHeader
- nsam
: EMAN::SpiderIO::SpiderHeader
- NSigmaClampingProcessor()
: EMAN::NSigmaClampingProcessor
- nslice
: EMAN::SpiderIO::SpiderHeader
- nsofar
: EMAN::SVDAnalyzer
- nsymbt
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- ntable
: EMAN::Util::KaiserBessel, EMAN::Util::sincBlackman, KaiserBessel, sincBlackman
- ntotbuf
: EMAN::ImagicIO::ImagicHeader
- NULL_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- num
: EMAN::ImagicIO::ImagicHeader
- NUM_4BYTES_AFTER_IXOLD
: EMAN::ImagicIO2, EMAN::ImagicIO
- NUM_4BYTES_AFTER_MAP
: EMAN::MrcIO
- NUM_4BYTES_AFTER_NAME
: EMAN::ImagicIO2
- NUM_4BYTES_AFTER_SPACE
: EMAN::ImagicIO
- NUM_4BYTES_PRE_IXOLD
: EMAN::ImagicIO
- NUM_4BYTES_PRE_IYLP
: EMAN::ImagicIO2
- NUM_4BYTES_PRE_MAP
: EMAN::MrcIO
- NUM_FLOATS_IN_HEADER
: EMAN::SpiderIO
- NUM_ID_INT
: EMAN::DM4IO, EMAN::DM3IO
- NUM_INT_IN_FILE_HEADER
: EMAN::EmimIO
- num_triangles
: EMAN::Symmetry3D
- number_of_element()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- NumberDimensions
: EMAN::SerIO::SerHeader
- numcls
: EMAN::ImagicIO2::Imagic4D
- numeigen
: EMAN::ImagicIO2::Imagic4D
- numEles
: wustl_mm::SkeletonMaker::GridQueue2, wustl_mm::SkeletonMaker::GridQueue
- numfloats
: EMAN::MrcIO::FeiMrcHeader
- numintegers
: EMAN::MrcIO::FeiMrcHeader
- Numrinit()
: EMAN::PolarData
- nvec
: EMAN::PCAlarge, EMAN::PCAsmall, EMAN::SVDAnalyzer
- NX
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- nx
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::PgmIO, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- nx2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nxstart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- nxy
: EMAN::EMData
- nxyz
: EMAN::FourierPixelInserter3D, EMAN::EMData
- ny
: EMAN::XplorIO, EMAN::VtkIO, EMAN::V4L2IO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::PgmIO, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::IcosIO::IcosHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- NY
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ny2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nystart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- nz
: EMAN::XplorIO, EMAN::VtkIO, EMAN::EMArray< T >, EMAN::SitusIO, EMAN::SerIO, EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData, EMAN::TestImageProcessor, EMAN::AreaProcessor, EMAN::CoordinateProcessor, EMAN::XYZReconstructor, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader, EMAN::OmapIO::OmapHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO::IcosHeader, EMAN::FitsIO, EMAN::EmIO::EMHeader, EMAN::EmimIO::EmimFileHeader, EMAN::EMData, EMAN::Df3IO, EMDataForCuda, EMAN::AmiraIO
- nz2
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- nzstart
: EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- oacc
: olist
- ObjectType
: EMAN::EMObject
- objname
: EMAN::E2Exception
- oblnk
: olist
- OBSELETE_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- OctahedralSym()
: EMAN::OctahedralSym
- OCTET
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- OCTEU
: EMAN::GatanDM4::TagData
- OCTEV
: EMAN::GatanDM4::TagData
- oerr
: olist
- offset
: t_BPCQ_line
- OffsetArrayOffset
: EMAN::SerIO::SerHeader
- ofm
: olist
- ofnm
: olist
- ofnmlen
: olist
- oldav
: EMAN::ImagicIO::ImagicHeader
- omapfile
: EMAN::OmapIO
- omaph
: EMAN::OmapIO
- OmapIO()
: EMAN::OmapIO
- oneD
: EMAN::SerIO
- oneDfftPolar()
: EMAN::EMData
- onelinenn()
: EMAN::EMData
- onelinenn_ctf()
: EMAN::EMData
- onelinenn_ctf_applied()
: EMAN::EMData
- onelinenn_mult()
: EMAN::EMData
- op
: EMAN::BinaryOperateProcessor< Type >
- operator *()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Vector3, EMAN::ScreenVector
- operator *=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator bool()
: EMAN::EMObject
- operator const char *()
: EMAN::EMObject
- operator Ctf *()
: EMAN::EMObject
- operator double()
: EMAN::EMObject
- operator EMData *()
: EMAN::EMObject
- operator float()
: EMAN::EMObject
- operator float *()
: EMAN::EMObject
- operator int()
: EMAN::EMObject
- operator int *()
: EMAN::EMObject
- operator IntPoint()
: EMAN::FloatPoint
- operator short()
: EMAN::EMObject
- operator Transform *()
: EMAN::EMObject
- operator unsigned int()
: EMAN::EMObject
- operator vector()
: EMAN::Vec3< Type >, EMAN::FloatPoint, EMAN::FloatSize, EMAN::EMObject
- operator void *()
: EMAN::EMObject
- operator XYData *()
: EMAN::EMObject
- operator!=
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::Dict, EMAN::EMObject
- operator()()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Util::Gaussian, EMAN::Util::KaiserBessel::kbi0_win, EMAN::Util::KaiserBessel::kbsinh_win, Gaussian, KaiserBessel::kbi0_win, KaiserBessel::kbsinh_win, ccf_value, assign_groups_comparator, cmpang, EMAN::EMArray< T >, EMAN::TomoTiltEdgeMaskProcessor::GaussianFunctoid, EMAN::MinShrinkProcessor::LessThan, EMAN::MaxShrinkProcessor::GreaterThan, EMAN::EMData
- operator+()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- operator+=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator-()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- operator-=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator/()
: EMAN::Vector4, EMAN::Vector3
- operator/=()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Quaternion, EMAN::EMData
- operator<()
: EMAN::XYData::Pair, d_ang
- operator=()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::OptimumOrientationGenerator, EMAN::SaffOrientationGenerator, EMAN::EvenOrientationGenerator, EMAN::RandomOrientationGenerator, EMAN::EmanOrientationGenerator, EMAN::OrientationGenerator, EMAN::Icosahedral2Sym, EMAN::IcosahedralSym, EMAN::OctahedralSym, EMAN::TetrahedralSym, EMAN::PlatonicSym, EMAN::HSym, EMAN::DSym, EMAN::CSym, EMAN::Symmetry3D, EMAN::EMArray< T >, EMAN::FourierInserter3DMode8, EMAN::FourierInserter3DMode7, EMAN::FourierInserter3DMode6, EMAN::FourierInserter3DMode5, EMAN::FourierInserter3DMode3, EMAN::FourierInserter3DMode2, EMAN::FourierInserter3DMode1, EMAN::FourierPixelInserter3D, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor, EMAN::ReconstructorVolumeData, EMAN::Reconstructor, EMAN::PointArray, EMAN::PDBReader, EMAN::FloatPoint, EMAN::Dict::const_iterator, EMAN::Dict::iterator, EMAN::Dict, EMAN::EMObject, EMAN::EMData
- operator==()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Transform, EMAN::Dict, EMAN::EMObject, EMAN::EMData
- operator[]()
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::Transform, EMAN::Reconstructor, EMAN::CustomVector< type >, EMAN::FloatPoint, EMAN::IntPoint, EMAN::FloatSize, EMAN::IntSize, EMAN::Dict, EMAN::TypeDict
- operator^()
: EMAN::Vector3
- opt_from_proj()
: EMAN::PointArray
- optimize_distances()
: EMAN::OptimumOrientationGenerator
- OptimumOrientationGenerator()
: EMAN::OptimumOrientationGenerator
- OptVarianceCmp()
: EMAN::OptVarianceCmp
- order
: EMAN::EmimIO::EmimFileHeader
- OrientationGenerator()
: EMAN::OrientationGenerator
- origin
: EMAN::Region
- originx
: EMAN::VtkIO, EMAN::ColorRGBGenerator
- originy
: EMAN::VtkIO, EMAN::ColorRGBGenerator
- originz
: EMAN::VtkIO, EMAN::ColorRGBGenerator
- origx
: EMAN::SitusIO
- origy
: EMAN::SitusIO
- origz
: EMAN::SitusIO
- orl
: olist
- orthogonalize()
: EMAN::Transform
- oseq
: BPKT
- osta
: olist
- OU
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ounit
: olist
- out
: EMAN::Log
- outer
: EMAN::ColorRGBGenerator
- outer_radius
: EMAN::CircularMaskProcessor
- outer_radius_square
: EMAN::CircularMaskProcessor
- OUTFORMAT
: EMAN::XplorIO, EMAN::SitusIO
- OUTLINE
: EMAN::EMFTGL
- OVERALL_STACK_HEADER
: EMAN::SpiderIO
- ovqual
: EMAN::ImagicIO2::Imagic4D
- owns_emdata
: wustl_mm::SkeletonMaker::VolumeData
- pack_complex_to_real()
: EMAN::Util
- PACKED_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- Pad()
: wustl_mm::SkeletonMaker::VolumeData
- pad
: EMAN::Util, wustl_mm::SkeletonMaker::Volume, EMAN::PifIO::PifImageHeader, EMAN::PifIO::PifFileHeader
- pad_corner()
: EMAN::EMData
- PaintProcessor()
: EMAN::PaintProcessor
- Pair()
: EMAN::XYData::Pair
- param
: EMAN::EmimIO::EmimImageHeader
- parameters
: EMAN::EmIO::EMHeader
- params
: EMAN::Projector, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::Averager, EMAN::Analyzer, EMAN::Aligner
- params_match()
: EMAN::EMFTGL::EMFTGLFontInstance
- parent_group
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- PARM_NONE
: EMAN::EmimIO
- PARM_NORM
: EMAN::EmimIO
- path
: EMAN::EMData
- pathnum
: EMAN::EMData
- PCAlarge()
: EMAN::PCAlarge
- PCAsmall()
: EMAN::PCAsmall
- pcoher
: EMAN::ImagicIO2::Imagic4D
- pdb2mrc_by_nfft()
: EMAN::PointArray
- pdb2mrc_by_summation()
: EMAN::PointArray
- PDBReader()
: EMAN::PDBReader
- peak
: CudaPeakInfoFloat, CudaPeakInfo
- peak_ccf()
: EMAN::EMData
- peak_search()
: EMAN::EMData
- peakcmp()
: EMAN::EMData
- PEAKS_DIV
: EMAN::PointArray, EMAN::PDBReader
- PEAKS_SUB
: EMAN::PointArray, EMAN::PDBReader
- PerformPureJuSkeletonization()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- permissable_2d_not_rot
: EMAN::Transform
- permissable_3d_not_rot
: EMAN::Transform
- permissable_rot_keys
: EMAN::Transform
- pfh
: EMAN::PifIO
- PGM_ASCII
: EMAN::PgmIO
- PGM_BINARY
: EMAN::PgmIO
- pgm_file
: EMAN::PgmIO
- PGM_UNKNOWN_FILE
: EMAN::PgmIO
- PgmIO()
: EMAN::PgmIO
- pgroup
: EMAN::ImagicIO2::Imagic4D
- phase()
: EMAN::EMData
- phase_cog()
: EMAN::EMData
- phi
: EMAN::SpiderIO::SpiderHeader, EMAN::GaussFFTProjector, EMAN::EmimIO::EmimImageHeader
- phi1
: EMAN::Util::tmpstruct, EMAN::SpiderIO::SpiderHeader, tmpstruct
- phi2
: EMAN::SpiderIO::SpiderHeader
- pi
: EMAN::EMConsts
- PIF_BOXED_DATA
: EMAN::PifIO
- PIF_BOXED_FLOAT_INT
: EMAN::PifIO
- PIF_CHAR
: EMAN::PifIO
- pif_file
: EMAN::PifIO
- PIF_FLOAT
: EMAN::PifIO
- PIF_FLOAT_COMPLEX
: EMAN::PifIO
- PIF_FLOAT_INT
: EMAN::PifIO
- PIF_FLOAT_INT_COMPLEX
: EMAN::PifIO
- PIF_INVALID
: EMAN::PifIO
- PIF_MAGIC_NUM
: EMAN::PifIO
- PIF_MAP_FLOAT_INT
: EMAN::PifIO
- PIF_MAP_FLOAT_INT_2
: EMAN::PifIO
- PIF_MAP_FLOAT_SHORT
: EMAN::PifIO
- PIF_SHORT
: EMAN::PifIO
- PIF_SHORT_COMPLEX
: EMAN::PifIO
- PIF_SHORT_FLOAT
: EMAN::PifIO
- PIF_SHORT_FLOAT_COMPLEX
: EMAN::PifIO
- PifDataMode
: EMAN::PifIO
- PifIO()
: EMAN::PifIO
- pixel
: EMAN::SalIO, EMAN::EmimIO::EmimFileHeader, EMAN::AmiraIO
- Pixel()
: EMAN::Pixel
- pixel_at()
: EMAN::FourierPlaneReconstructor, EMAN::WienerFourierReconstructor, EMAN::FourierReconstructor
- pixel_size
: EMAN::MrcIO::FeiMrcExtHeader
- pixels
: EMAN::ImagicIO::ImagicHeader, EMAN::SVDAnalyzer
- PIXMAP
: EMAN::EMFTGL
- platonic_alt_lower_bound()
: EMAN::PlatonicSym
- platonic_params
: EMAN::PlatonicSym
- PlatonicSym()
: EMAN::PlatonicSym
- POINT2_FLOAT32_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- POINT2_SINT16_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- POINT2_SINT16_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- POINT2_SINT32_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- Point3()
: EMAN::Point3
- point3d_t()
: point3d_t
- point_in_which_asym_unit()
: EMAN::Symmetry3D
- point_is_in_convex_polygon_2d()
: EMAN::Util
- point_is_in_triangle_2d()
: EMAN::Util
- point_map
: EMAN::MarchingCubes
- PointArray()
: EMAN::PointArray
- pointInfo
: EMAN::PDBReader
- pointRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- points
: EMAN::PointArray, EMAN::PDBReader
- Polar2D()
: EMAN::Util
- Polar2Dm()
: EMAN::Util
- Polar2Dmi()
: EMAN::Util
- PolarData()
: EMAN::PolarData
- POLYDATA
: EMAN::VtkIO
- POLYGON
: EMAN::EMFTGL
- popQueue()
: wustl_mm::SkeletonMaker::GridQueue
- pos2
: EMAN::point_t
- posTime
: EMAN::SerIO
- power()
: EMAN::EMData
- pp
: EMAN::U3DWriter, EMAN::MarchingCubes
- prb1d()
: EMAN::Util
- pre
: wustl_mm::SkeletonMaker::GridQueue2
- predict()
: EMAN::Util
- prepcubes()
: EMAN::PawelProjector
- prepend()
: wustl_mm::SkeletonMaker::GridQueue2
- prepre
: wustl_mm::SkeletonMaker::GridQueue2
- preprocess()
: EMAN::NewFourierProcessor, EMAN::TestImageProcessor, EMAN::HighpassAutoPeakProcessor, EMAN::LowpassAutoBProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor
- preprocess_slice()
: EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- preprocessandconvertpars()
: EMAN::NewFourierProcessor
- print()
: EMAN::Matrix4, EMAN::Vector4, EMAN::Matrix3, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector
- print_generator_type()
: EMAN::Randnum
- print_image()
: EMAN::EMData
- print_params()
: EMAN::Reconstructor
- printInfo()
: EMAN::EMObject
- printMatI3D()
: EMAN::Util
- printme()
: EMAN::Transform
- PriorityQueue()
: EMAN::PriorityQueue< ValueT, KeyT >
- process()
: EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::DirectionalSumProcessor, EMAN::TransposeProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::BooleanShrinkProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::Processor, EMAN::EMData
- process_ascii_region_io()
: EMAN::EMUtil
- process_dist_pixel()
: EMAN::MakeRadiusProcessor, EMAN::MakeRadiusSquaredProcessor, EMAN::MaskGaussInvProcessor, EMAN::MaskGaussProcessor, EMAN::MaskNoiseProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor
- process_inplace()
: EMAN::CTF_Processor, EMAN::NewBandpassTanhProcessor, EMAN::NewHomomorphicTanhProcessor, EMAN::NewHighpassTanhProcessor, EMAN::NewLowpassTanhProcessor, EMAN::NewHomomorphicButterworthProcessor, EMAN::NewHighpassButterworthProcessor, EMAN::NewLowpassButterworthProcessor, EMAN::NewRadialTableProcessor, EMAN::InverseKaiserSinhProcessor, EMAN::InverseKaiserI0Processor, EMAN::SHIFTProcessor, EMAN::NewInverseGaussProcessor, EMAN::NewHomomorphicGaussProcessor, EMAN::NewBandpassGaussProcessor, EMAN::NewHighpassGaussProcessor, EMAN::NewLowpassGaussProcessor, EMAN::NewHomomorphicTopHatProcessor, EMAN::NewBandpassTopHatProcessor, EMAN::NewHighpassTopHatProcessor, EMAN::NewLowpassTopHatProcessor, EMAN::MirrorProcessor, EMAN::RotateInFSProcessor, EMAN::ConvolutionKernelProcessor, EMAN::BinarySkeletonizerProcessor, EMAN::ApplyPolynomialProfileToHelix, EMAN::ModelEMCylinderProcessor, EMAN::HistogramBin, EMAN::RadialProcessor, EMAN::FFTProcessor, EMAN::TomoTiltAngleWeightProcessor, EMAN::TomoTiltEdgeMaskProcessor, EMAN::WaveletProcessor, EMAN::CCDNormProcessor, EMAN::TestImageCylinder, EMAN::TestImageNoiseGauss, EMAN::TestImageNoiseUniformRand, EMAN::TestImageCirclesphere, EMAN::TestImageHollowEllipse, EMAN::TestImageEllipse, EMAN::TestImageSquarecube, EMAN::TestImageSinewaveCircular, EMAN::TestImageSinewave, EMAN::TestImageSphericalWave, EMAN::TestImageScurve, EMAN::TestImageGaussian, EMAN::TestImageAxes, EMAN::TestImageGradient, EMAN::TestTomoImage, EMAN::TestImageLineWave, EMAN::CTFSNRWeightProcessor, EMAN::TestImageFourierNoiseProfile, EMAN::TestImageFourierNoiseGaussian, EMAN::TestImagePureGaussian, EMAN::IterBinMaskProcessor, EMAN::SmartMaskProcessor, EMAN::BinaryOperateProcessor< Type >, EMAN::WatershedProcessor, EMAN::DirectionalSumProcessor, EMAN::PaintProcessor, EMAN::CoordinateMaskFileProcessor, EMAN::IndexMaskFileProcessor, EMAN::LocalNormProcessor, EMAN::StripeXYProcessor, EMAN::SymSearchProcessor, EMAN::FileFourierProcessor, EMAN::SNRProcessor, EMAN::ACFCenterProcessor, EMAN::ToMassCenterProcessor, EMAN::PhaseToMassCenterProcessor, EMAN::AddMaskShellProcessor, EMAN::AutoMask3D2Processor, EMAN::AutoMask3DProcessor, EMAN::AutoMaskAsymUnit, EMAN::AutoMask2DProcessor, EMAN::PhaseToCornerProcessor, EMAN::PhaseToCenterProcessor, EMAN::FourierToCenterProcessor, EMAN::FourierToCornerProcessor, EMAN::AddRandomNoiseProcessor, EMAN::AddNoiseProcessor, EMAN::FlipProcessor, EMAN::TransposeProcessor, EMAN::RotationalSubstractProcessor, EMAN::RotationalAverageProcessor, EMAN::NormalizeToLeastSquareProcessor, EMAN::NormalizeRowProcessor, EMAN::NormalizeByMassProcessor, EMAN::NormalizeRampNormVar, EMAN::NormalizeProcessor, EMAN::BilateralProcessor, EMAN::ZeroEdgePlaneProcessor, EMAN::ZeroEdgeRowProcessor, EMAN::DecayEdgeProcessor, EMAN::AverageXProcessor, EMAN::MeanZeroEdgeProcessor, EMAN::BeamstopProcessor, EMAN::SigmaZeroEdgeProcessor, EMAN::RealToFFTProcessor, EMAN::VerticalStripeProcessor, EMAN::RampProcessor, EMAN::FlattenBackgroundProcessor, EMAN::NonConvexProcessor, EMAN::GradientPlaneRemoverProcessor, EMAN::GradientRemoverProcessor, EMAN::FFTResampleProcessor, EMAN::MedianShrinkProcessor, EMAN::MeanShrinkProcessor, EMAN::MinShrinkProcessor, EMAN::MaxShrinkProcessor, EMAN::BooleanShrinkProcessor, EMAN::CutoffBlockProcessor, EMAN::DiffBlockProcessor, EMAN::BoxStatProcessor, EMAN::AreaProcessor, EMAN::ComplexPixelProcessor, EMAN::LinearPyramidProcessor, EMAN::CoordinateProcessor, EMAN::BinarizeFourierProcessor, EMAN::ToMinvalProcessor, EMAN::NSigmaClampingProcessor, EMAN::ClampingProcessor, EMAN::ScaleTransformProcessor, EMAN::ApplySymProcessor, EMAN::IntTranslateProcessor, EMAN::TransformProcessor, EMAN::Rotate180Processor, EMAN::RealPixelProcessor, EMAN::LowpassRandomPhaseProcessor, EMAN::Wiener2DFourierProcessor, EMAN::CtfSimProcessor, EMAN::KmeansSegmentProcessor, EMAN::DistanceSegmentProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::ZGradientProcessor, EMAN::YGradientProcessor, EMAN::XGradientProcessor, EMAN::ConvolutionProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::FourierAnlProcessor, EMAN::FourierProcessor, EMAN::ImageProcessor, EMAN::Processor, EMAN::XYZProcessor, EMAN::EMData
- process_lines_io()
: EMAN::EMUtil
- process_list_inplace()
: EMAN::Processor
- process_numbers_io()
: EMAN::EMUtil
- process_pixel()
: EMAN::PeakOnlyProcessor, EMAN::MinusPeakProcessor, EMAN::BoxMaxProcessor, EMAN::BoxSigmaProcessor, EMAN::BoxMedianProcessor, EMAN::BoxStatProcessor, EMAN::ZeroConstantProcessor, EMAN::AreaProcessor, EMAN::ComplexNormPixel, EMAN::ComplexPixelProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::CircularMaskProcessor, EMAN::CoordinateProcessor, EMAN::LogProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::BinarizeProcessor, EMAN::CutToZeroProcessor, EMAN::ToZeroProcessor, EMAN::ValueSqrtProcessor, EMAN::ValueSquaredProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::BooleanProcessor, EMAN::FloorValueProcessor, EMAN::AbsoluateValueProcessor, EMAN::RealPixelProcessor
- process_region_io()
: EMAN::EMUtil
- progname
: EMAN::TestUtil
- program
: EMAN::PifIO::PifFileHeader
- project()
: EMAN::EMData
- project3d()
: EMAN::ChaoProjector, EMAN::StandardProjector, EMAN::MaxValProjector, EMAN::PawelProjector, EMAN::FourierGriddingProjector, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::XYZProjector
- projection_by_nfft()
: EMAN::PointArray
- projection_by_summation()
: EMAN::PointArray
- PruneCurves()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PruneSurfaces()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PRUNING_CLASS_PRUNE_CURVES
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PRUNING_CLASS_PRUNE_POINTS
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- PRUNING_CLASS_PRUNE_SURFACES
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- prv_nx
: EMAN::EMData::ClipInplaceVariables
- prv_ny
: EMAN::EMData::ClipInplaceVariables
- prv_nz
: EMAN::EMData::ClipInplaceVariables
- prv_x_left
: EMAN::EMData::ClipInplaceVariables
- prv_x_right
: EMAN::EMData::ClipInplaceVariables
- prv_y_back
: EMAN::EMData::ClipInplaceVariables
- prv_y_front
: EMAN::EMData::ClipInplaceVariables
- prv_z_bottom
: EMAN::EMData::ClipInplaceVariables
- prv_z_top
: EMAN::EMData::ClipInplaceVariables
- pseq
: BPKT
- psi1
: EMAN::SpiderIO::SpiderHeader
- psi2
: EMAN::SpiderIO::SpiderHeader
- ptype
: EMAN::EmimIO::EmimImageHeader
- push_back()
: EMAN::CustomVector< type >
- push_back_3()
: EMAN::CustomVector< type >
- pushQueue()
: wustl_mm::SkeletonMaker::GridQueue
- put()
: EMAN::Dict, EMAN::TypeDict
- pw_extract()
: EMAN::Util
- pWords
: EMAN::PDBReader
- pwr
: EMAN::ValuePowProcessor
- px
: CudaPeakInfo
- py
: CudaPeakInfo
- pz
: CudaPeakInfo
- r
: EMAN::Util::KaiserBessel, KaiserBessel, EMAN::Randnum, EMAN::PifIO::PifColorMap
- r1
: EMAN::PaintProcessor
- r2
: EMAN::PaintProcessor
- rad2deg
: EMAN::EMConsts
- RADIAL_TABLE
: EMAN::Processor
- Radialize()
: EMAN::Util
- radius
: EMAN::PifIO::PifImageHeader
- radius_x
: EMAN::MaskGaussNonuniformProcessor
- radius_y
: EMAN::MaskGaussNonuniformProcessor
- radius_z
: EMAN::MaskGaussNonuniformProcessor
- radprofile()
: EMAN::ModelHelixProcessor
- Randnum()
: EMAN::Randnum
- RandomOrientationGenerator()
: EMAN::RandomOrientationGenerator
- randomSeedCluster()
: EMAN::BoxSVDClassifier
- range
: APMDopt, APMQopt, EMAN::CollapseProcessor
- RangeThresholdProcessor()
: EMAN::RangeThresholdProcessor
- RASTER_SCAN
: EMAN::SalIO
- rdata
: EMAN::EMData
- rdonly
: EMAN::ImagicIO::ImagicHeader
- read()
: EMAN::newfile_store, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- read_any()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_array_data()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_array_types()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_binedimage()
: EMAN::EMData
- read_ctf()
: EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::ImageIO, EMAN::FitsIO
- read_data()
: EMAN::ImageIO, EMAN::EMData
- read_data_element()
: EMAN::SerIO
- read_data_tag()
: EMAN::SerIO
- read_dataset()
: EMAN::VtkIO
- read_dim_arr()
: EMAN::SerIO
- read_fei_header()
: EMAN::MrcIO
- read_file()
: EMAN::XYData
- read_from_pdb()
: EMAN::PointArray, EMAN::PDBReader
- read_header()
: EMAN::ImageIO
- read_image()
: EMAN::EMData
- read_images()
: EMAN::EMData
- read_images_ext()
: EMAN::EMData
- read_mrc_header()
: EMAN::MrcIO
- read_native()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- READ_ONLY
: EMAN::ImageIO
- read_string()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- read_struct_types()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- READ_WRITE
: EMAN::ImageIO
- real
: EMAN::Quaternion, EMAN::EMData, EMAN::point_t
- real2complex()
: EMAN::EMData
- real2FH()
: EMAN::EMData
- REAL4_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- REAL8_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- real_scale_factor
: EMAN::PifIO
- REAL_TYPE_MAGIC
: EMAN::ImagicIO2, EMAN::ImagicIO
- RealPixelProcessor()
: EMAN::RealPixelProcessor
- reals
: EMAN::ImagicIO::ImagicHeader
- realtype
: EMAN::ImagicIO2::Imagic4D
- RealType
: EMAN::ImagicIO2
- reclassify()
: EMAN::KMeansAnalyzer
- reclen
: EMAN::SpiderIO::SpiderHeader
- reconstitute_image_mask()
: EMAN::Util
- Reconstructor()
: EMAN::Reconstructor
- ReconstructorVolumeData()
: EMAN::ReconstructorVolumeData
- record_length
: EMAN::SalIO
- RECT_FLOAT32_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RECT_FLOAT32_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RECT_SINT16_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RECT_SINT32_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RECTILINEAR_GRID
: EMAN::VtkIO
- recv_broadcast()
: EMAN::Util
- reduce()
: EMAN::Symmetry3D
- ref
: EMAN::ImagicIO2::Imagic4D
- ref3d
: EMAN::ImagicIO2::Imagic4D
- ref_angle_type
: AlignOptions
- ref_filename
: EMAN::LstIO, EMAN::LstFastIO
- ref_image_stack
: EMAN::CUDA_multiref_aligner
- ref_image_stack_filtered
: EMAN::CUDA_multiref_aligner
- Region()
: EMAN::Region
- remainder
: EMAN::MrcIO::FeiMrcExtHeader
- remove()
: EMAN::PriorityQueue< ValueT, KeyT >, wustl_mm::SkeletonMaker::GridQueue2, EMAN::EMCache< T >
- remove_filename_ext()
: EMAN::Util
- render_amp24()
: EMAN::EMData
- render_amp8()
: EMAN::GLUtil, EMAN::EMData
- render_amp8_gl_texture()
: EMAN::GLUtil
- render_ap24()
: EMAN::EMData
- render_string()
: EMAN::EMFTGL
- render_using_VBOs()
: EMAN::GLUtil
- rendermax
: EMAN::PgmIO
- rendermin
: EMAN::PgmIO
- replace_amplitudes()
: EMAN::EMData
- replace_by_summation()
: EMAN::PointArray
- repqual
: EMAN::ImagicIO2::Imagic4D
- reseed()
: EMAN::KMeansAnalyzer
- reset()
: wustl_mm::SkeletonMaker::GridQueue2
- residueName
: EMAN::PDBReader
- resize()
: EMAN::CustomVector< type >
- resNum
: EMAN::PDBReader
- resolx
: EMAN::ImagicIO2::Imagic4D
- resoly
: EMAN::ImagicIO2::Imagic4D
- resolz
: EMAN::ImagicIO2::Imagic4D
- restart()
: EMAN::file_store, EMAN::newfile_store
- restrict1()
: EMAN::Util, EMAN::EMData
- restrict2()
: EMAN::EMData
- result
: EMAN::XYZAverager, EMAN::Averager
- rgb
: EMAN::ColorRGBGenerator
- RGB_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGB_FLOAT32_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGB_FLOAT64_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGB_UINT16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGB_UINT8_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGB_UINT8_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_FLOAT32_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_FLOAT64_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_UINT16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_UINT8_0_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_UINT8_1_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_UINT8_2_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- RGBA_UINT8_3_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- rgbgenerator
: EMAN::MarchingCubes
- rgbmode
: EMAN::ColorRGBGenerator
- ri
: AlignOptions
- ri2ap()
: EMAN::EMData
- ri2inten()
: EMAN::EMData
- right_transform()
: EMAN::PointArray, EMAN::PDBReader
- ring_avg
: EMAN::MaskEdgeMeanProcessor
- RING_LENGTH
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- ring_width
: EMAN::MaskEdgeMeanProcessor
- ringwe()
: EMAN::PolarData
- rms
: EMAN::MrcIO::MrcHeader
- rot_fp
: EMAN::EMData
- rot_scale_conv()
: EMAN::EMData
- rot_scale_conv7()
: EMAN::EMData
- rot_scale_conv_new()
: EMAN::EMData
- rot_scale_conv_new_3D()
: EMAN::EMData
- rot_scale_conv_new_background()
: EMAN::EMData
- rot_scale_conv_new_background_3D()
: EMAN::EMData
- rot_scale_trans()
: EMAN::EMData
- rot_scale_trans2D()
: EMAN::EMData
- rot_scale_trans2D_background()
: EMAN::EMData
- rot_scale_trans_background()
: EMAN::EMData
- rotate()
: EMAN::Transform, EMAN::Quaternion, EMAN::EMData
- rotate_180()
: EMAN::EMData
- rotate_origin()
: EMAN::Transform
- rotate_origin_newBasis()
: EMAN::Transform
- rotate_phase_origin()
: EMAN::Util
- rotate_translate()
: EMAN::EMData
- rotate_x()
: EMAN::EMData
- RotateTranslateFlipScaleAligner()
: EMAN::RotateTranslateFlipScaleAligner
- RotateTranslateFlipScaleAlignerIterative()
: EMAN::RotateTranslateFlipScaleAlignerIterative
- RotateTranslateScaleAligner()
: EMAN::RotateTranslateScaleAligner
- RotateTranslateScaleAlignerIterative()
: EMAN::RotateTranslateScaleAlignerIterative
- rotation()
: EMAN::Matrix4
- rotationXYZtoUVW()
: EMAN::Matrix3
- rotavg()
: EMAN::EMData
- rotavg_i()
: EMAN::EMData
- round()
: EMAN::Util
- row()
: EMAN::Matrix4, EMAN::Matrix3
- rsize
: EMAN::ImagicIO2::Imagic4D
- rstep
: AlignOptions
- rttwopisigma
: EMAN::Util::Gaussian, Gaussian
- rw_mode
: EMAN::XplorIO, EMAN::VtkIO, EMAN::SpiderIO, EMAN::SitusIO, EMAN::SerIO, EMAN::SalIO, EMAN::XYZIO, EMAN::PifIO, EMAN::PgmIO, EMAN::OmapIO, EMAN::MrcIO, EMAN::LstIO, EMAN::LstFastIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::IcosIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO, EMAN::EmimIO, EMAN::DM4IO, EMAN::DM3IO, EMAN::Df3IO, EMAN::AmiraIO
- rX
: t_BPCQ_line
- SaffOrientationGenerator()
: EMAN::SaffOrientationGenerator
- sal_file
: EMAN::SalIO
- SalIO()
: EMAN::SalIO
- sanitycheck()
: EMAN::Util
- save_byteorder_to_dict()
: EMAN::EMData
- save_data()
: EMAN::Util
- save_to_pdb()
: EMAN::PointArray, EMAN::PDBReader
- sbasename()
: EMAN::Util
- sBtable
: EMAN::Util::sincBlackman, sincBlackman
- sBwin_tab()
: EMAN::Util::sincBlackman, sincBlackman
- scale
: EMAN::Transform, EMAN::EMData, EMAN::SpiderIO::SpiderHeader, EMAN::LinearXformProcessor, EMAN::OmapIO::OmapHeader, EMAN::OptVarianceCmp
- scale2
: EMAN::OmapIO::OmapHeader
- scale_fac
: EMAN::PifIO::PifFileHeader
- scale_pixel()
: EMAN::EMData
- ScaleAlignerABS()
: EMAN::ScaleAlignerABS
- scalefactor
: EMAN::PifIO::PifFileHeader
- scaling()
: EMAN::Matrix4
- scan_mode
: EMAN::SalIO
- ScanAxis
: EMAN::SalIO
- ScanMode
: EMAN::SalIO
- scannum
: EMAN::PifIO::PifImageHeader
- score
: wustl_mm::SkeletonMaker::gridQueueEle, EMAN::ImageScore
- ScreenPoint()
: EMAN::ScreenPoint
- ScreenVector()
: EMAN::ScreenVector
- search2()
: EMAN::Util
- search_nearby()
: EMAN::AutoMask3DProcessor
- sec
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- SECTION_MODE
: EMAN::XplorIO
- SER_CHAR
: EMAN::SerIO
- SER_COMPLEX16
: EMAN::SerIO
- SER_COMPLEX8
: EMAN::SerIO
- SER_DOUBLE
: EMAN::SerIO
- SER_FLOAT
: EMAN::SerIO
- SER_INT
: EMAN::SerIO
- SER_SHORT
: EMAN::SerIO
- SER_UCHAR
: EMAN::SerIO
- SER_UINT
: EMAN::SerIO
- SER_USHORT
: EMAN::SerIO
- SerDataMode
: EMAN::SerIO
- serfile
: EMAN::SerIO
- serh
: EMAN::SerIO
- SeriesID
: EMAN::SerIO::SerHeader
- SeriesVersion
: EMAN::SerIO::SerHeader
- SerImgMode
: EMAN::SerIO
- SerIO()
: EMAN::SerIO
- SerTagType
: EMAN::SerIO
- set()
: EMAN::Transform, EMAN::ImageSort
- set_array_offsets()
: EMAN::EMArray< T >, EMAN::EMData
- set_attr()
: EMAN::EMData
- set_attr_dict()
: EMAN::EMData
- set_attr_dict_explicit()
: EMAN::EMData
- set_attr_python()
: EMAN::EMData
- set_background()
: EMAN::EMAN2Ctf
- set_changecount()
: EMAN::EMData
- set_cmap_data()
: EMAN::ColorRGBGenerator
- set_col()
: EMAN::EMData
- set_complex()
: EMAN::EMData
- set_complex_at()
: EMAN::EMData
- set_complex_size()
: EMAN::EMData
- set_complex_x()
: EMAN::EMData
- set_ctf()
: EMAN::EMData
- set_CTF()
: AlignOptions
- set_data()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface, EMAN::EMData
- set_data_pickle()
: EMAN::EMData
- set_default()
: EMAN::Dict
- set_depth()
: EMAN::Region, EMAN::EMFTGL
- set_dtheta()
: AlignOptions
- set_endian()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_face_size()
: EMAN::EMFTGL
- set_fftodd()
: EMAN::EMData
- set_fftpad()
: EMAN::EMData
- set_FH()
: EMAN::EMData
- set_first_ring()
: AlignOptions
- set_flags()
: EMAN::EMData
- set_flipped()
: EMAN::EMData
- set_font_file_name()
: EMAN::EMFTGL
- set_font_mode()
: EMAN::EMFTGL
- set_from()
: EMAN::PointArray
- set_from_density_map()
: EMAN::PointArray
- set_have_angles()
: AlignOptions
- set_height()
: EMAN::Region
- set_last_ring()
: AlignOptions
- set_level()
: EMAN::Log
- set_line()
: EMAN::Util
- set_log_level()
: EMAN::Util
- set_logfile()
: EMAN::Log
- set_mask3D()
: AlignOptions
- set_matrix()
: EMAN::Transform
- set_maxit()
: AlignOptions
- set_mirror()
: EMAN::Transform
- set_mode()
: EMAN::BoxingTools
- set_number_points()
: EMAN::PointArray, EMAN::PDBReader
- set_nxc()
: EMAN::EMData
- set_origin()
: EMAN::Region
- set_param()
: EMAN::FactoryBase
- set_params()
: EMAN::Transform, EMAN::varimax, EMAN::PCAlarge, EMAN::PCAsmall, EMAN::GaussFFTProjector, EMAN::Projector, EMAN::PaintProcessor, EMAN::PeakOnlyProcessor, EMAN::AreaProcessor, EMAN::MaskGaussNonuniformProcessor, EMAN::MaskGaussProcessor, EMAN::MaskEdgeMeanProcessor, EMAN::MaskSharpProcessor, EMAN::CircularMaskProcessor, EMAN::SigmaProcessor, EMAN::RangeThresholdProcessor, EMAN::FiniteProcessor, EMAN::ExpProcessor, EMAN::LinearXformProcessor, EMAN::CollapseProcessor, EMAN::ValuePowProcessor, EMAN::RecipCarefullyProcessor, EMAN::RealPixelProcessor, EMAN::DoGFourierProcessor, EMAN::LoGFourierProcessor, EMAN::LinearRampProcessor, EMAN::Wiener2DFourierProcessor, EMAN::Wiener2DAutoAreaProcessor, EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor, EMAN::Processor, EMAN::FactoryBase, EMAN::Cmp, EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager, EMAN::Averager, EMAN::SVDAnalyzer, EMAN::KMeansAnalyzer, EMAN::Analyzer, EMAN::Aligner
- set_params_inverse()
: EMAN::Transform
- set_path()
: EMAN::EMData
- set_pathnum()
: EMAN::EMData
- set_points_array()
: EMAN::PointArray, EMAN::PDBReader
- set_pre_trans()
: EMAN::Transform
- set_progname()
: EMAN::TestUtil
- set_radial_non_zero()
: EMAN::BoxingTools
- set_randnum_seed()
: EMAN::Util
- set_ref_angle_type()
: AlignOptions
- set_region()
: EMAN::BoxingTools
- set_ri()
: AlignOptions, EMAN::EMData
- set_rotation()
: EMAN::Transform, EMAN::EMData
- set_row()
: EMAN::EMData
- set_rstep()
: AlignOptions
- set_sampling()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_scale()
: EMAN::Transform
- set_seed()
: EMAN::Randnum
- set_shuffled()
: EMAN::EMData
- set_sirt_lam()
: AlignOptions
- set_sirt_maxit()
: AlignOptions
- set_sirt_tol()
: AlignOptions
- set_size()
: EMAN::XYData, EMAN::EMData
- set_snr()
: AlignOptions, EMAN::EMAN2Ctf
- set_step()
: AlignOptions
- set_supp_pickle()
: EMAN::EMData
- set_surface_value()
: EMAN::MarchingCubes, EMAN::Isosurface
- set_symmetry()
: AlignOptions
- set_thumb_index()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- set_trans()
: EMAN::Transform
- set_translation()
: EMAN::EMData
- set_use_sirt()
: AlignOptions
- set_using_display_lists()
: EMAN::EMFTGL
- set_value()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- set_value_at()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::EMData
- set_value_at_fast()
: EMAN::EMData
- set_value_at_index()
: EMAN::EMData
- set_vector_at()
: EMAN::PointArray
- set_width()
: EMAN::Region
- set_x()
: EMAN::XYData
- set_xrng()
: AlignOptions
- set_xy_list()
: EMAN::XYData
- set_xyz_origin()
: EMAN::EMData
- set_xyzoff()
: EMAN::EMData
- set_y()
: EMAN::XYData
- set_yrng()
: AlignOptions
- setbutterworthdefaults()
: EMAN::NewFourierProcessor
- setCmapData()
: EMAN::MarchingCubes, EMAN::Isosurface
- setCmapMinMax()
: EMAN::MarchingCubes, EMAN::Isosurface
- SetDataAt()
: wustl_mm::SkeletonMaker::VolumeData
- setDataAt()
: wustl_mm::SkeletonMaker::Volume
- setDims()
: EMAN::BoxSVDClassifier
- setdm()
: EMAN::ChaoProjector
- setMinMax()
: EMAN::ColorRGBGenerator
- setNeedToRecolor()
: EMAN::ColorRGBGenerator
- SetOrigin()
: wustl_mm::SkeletonMaker::VolumeData
- setOrigin()
: EMAN::ColorRGBGenerator, wustl_mm::SkeletonMaker::Volume
- setRGBmode()
: EMAN::MarchingCubes, EMAN::ColorRGBGenerator, EMAN::Isosurface
- setRGBorigin()
: EMAN::MarchingCubes, EMAN::Isosurface
- setRGBscale()
: EMAN::MarchingCubes, EMAN::Isosurface
- setScale()
: EMAN::ColorRGBGenerator
- SetSize()
: wustl_mm::SkeletonMaker::VolumeData
- setSpacing()
: wustl_mm::SkeletonMaker::Volume
- SetSpacing()
: wustl_mm::SkeletonMaker::VolumeData
- setup()
: EMAN::nnSSNR_ctfReconstructor, EMAN::nn4_ctf_rectReconstructor, EMAN::nn4_ctfReconstructor, EMAN::nnSSNR_Reconstructor, EMAN::nn4_rectReconstructor, EMAN::nn4Reconstructor, EMAN::BackProjectionReconstructor, EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::FourierReconstructorSimple2D, EMAN::Reconstructor, EMAN::XYZReconstructor, EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- setup4slice()
: EMAN::EMData
- setup_params()
: EMAN::CUDA_multiref_aligner
- setup_seed()
: EMAN::FourierPlaneReconstructor, EMAN::FourierReconstructor, EMAN::Reconstructor
- sfopen()
: EMAN::ImageIO
- sget_value_at()
: EMAN::EMData
- sget_value_at_interp()
: EMAN::EMData
- SGI_IBM
: EMAN::ImagicIO2
- sgn()
: EMAN::Util
- SHIFT
: EMAN::Processor
- shift
: EMAN::LinearXformProcessor, EMAN::OptVarianceCmp
- SHORT
: EMAN::VtkIO, EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- SHORT_CTF_MAGIC
: EMAN::MrcIO
- shrange
: APMQopt
- shuffle_pad_corner()
: EMAN::EMData
- si
: EMAN::EMObject
- sigma
: EMAN::Util::Gaussian, EMAN::SpiderIO::SpiderHeader, Gaussian, EMAN::CoordinateProcessor, EMAN::RealPixelProcessor, EMAN::LoGFourierProcessor, EMAN::PifIO::PifImageHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- sigma1
: EMAN::DoGFourierProcessor
- sigma2
: EMAN::DoGFourierProcessor
- sigma_image
: EMAN::IterationAverager, EMAN::ImageAverager
- SIGNED_INT16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- SIGNED_INT32_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- SIGNED_INT64_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- SIGNED_INT8_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- sincBlackman()
: EMAN::Util::sincBlackman, sincBlackman
- SINGLE_IMAGE_HEADER
: EMAN::SpiderIO
- SingleSpiderIO()
: EMAN::SingleSpiderIO
- singular_vals
: EMAN::PCA
- sinhwin()
: EMAN::Util::FakeKaiserBessel, EMAN::Util::KaiserBessel, FakeKaiserBessel, KaiserBessel
- sinoend
: EMAN::ImagicIO2::Imagic4D
- sinostart
: EMAN::ImagicIO2::Imagic4D
- sirt_lam
: AlignOptions
- sirt_maxit
: AlignOptions
- sirt_tol
: AlignOptions
- SITUS_HEADER_LINES
: EMAN::SitusIO
- situsfile
: EMAN::SitusIO
- SitusIO()
: EMAN::SitusIO
- size
: EMAN::ImageSort, EMAN::Dict, EMAN::TypeDict, EMAN::EMArray< T >, EMAN::CustomVector< type >, EMAN::Region, EMAN::EMCache< T >
- size_of_in_bytes()
: EMAN::U3DWriter
- skeleton()
: wustl_mm::SkeletonMaker::Volume
- skeletonDirectionRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- slice_value
: EMAN::MaskGaussInvProcessor
- slicereverse()
: EMAN::Util
- slope
: EMAN::LinearRampProcessor
- slowseed
: EMAN::KMeansAnalyzer
- snr
: AlignOptions, EMAN::EMAN2Ctf
- snrsum
: EMAN::CtfCWautoAverager, EMAN::CtfCAutoAverager
- sort()
: wustl_mm::SkeletonMaker::GridQueue, EMAN::ImageSort
- sort_by_axis()
: EMAN::PointArray
- sort_mat()
: EMAN::Util
- spaberr
: EMAN::ImagicIO2::Imagic4D
- space
: EMAN::ImagicIO::ImagicHeader
- space2
: EMAN::ImagicIO::ImagicHeader
- space3
: EMAN::ImagicIO::ImagicHeader
- spacingx
: EMAN::VtkIO
- spacingy
: EMAN::VtkIO
- spacingz
: EMAN::VtkIO
- SPECULAR_COLOR_COUNT
: EMAN::U3DWriter
- sph2cb()
: EMAN::ChaoProjector
- spider_file
: EMAN::SpiderIO
- SpiderIO()
: EMAN::SpiderIO
- SpiderType
: EMAN::SpiderIO
- spline()
: EMAN::Util
- spline_mat()
: EMAN::Util
- splint()
: EMAN::Util
- SqEuclideanCmp()
: EMAN::SqEuclideanCmp
- sqrt()
: EMAN::EMData
- square()
: EMAN::Util
- square_sum()
: EMAN::Util
- squared_length()
: EMAN::Vec2< Type >, EMAN::Vec3< Type >
- sstrncmp()
: EMAN::Util
- stamp
: EMAN::IcosIO::IcosHeader
- STAMP
: EMAN::IcosIO
- stamp1
: EMAN::IcosIO::IcosHeader
- STAMP1
: EMAN::IcosIO
- STAMP2
: EMAN::IcosIO
- stamp2
: EMAN::IcosIO::IcosHeader
- stamp3
: EMAN::IcosIO::IcosHeader
- STAMP3
: EMAN::IcosIO
- start
: EMAN::PawelProjector::IPCube
- static_get_param_types()
: EMAN::RotateTranslateFlipAlignerIterative, EMAN::RotateTranslateFlipAligner, EMAN::RotateFlipAlignerIterative, EMAN::RotateFlipAligner
- step
: AlignOptions
- STEP
: EMAN::CUDA_multiref_aligner, EMAN::CUDA_Aligner
- str
: EMAN::EMObject
- str_to_lower()
: EMAN::Util
- strarray
: EMAN::EMObject
- STRING
: EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- STRINGARRAY
: EMAN::EMObject
- STRUCT
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- STRUCTURED_GRID
: EMAN::VtkIO
- STRUCTURED_POINTS
: EMAN::VtkIO
- sub
: EMAN::EMData, EMAN::MrcIO::FeiMrcHeader
- sub_fav()
: EMAN::Util
- sub_img()
: EMAN::Util
- subn_img()
: EMAN::Util
- subnx
: EMAN::ReconstructorVolumeData
- subny
: EMAN::ReconstructorVolumeData
- subnz
: EMAN::ReconstructorVolumeData
- subsquare()
: EMAN::EMData
- subx0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- suby0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- subz0
: EMAN::FourierPixelInserter3D, EMAN::ReconstructorVolumeData
- sum
: EMAN::AmpweightFourierProcessor, EMAN::SNREvalProcessor
- sum_oe()
: EMAN::CUDA_Aligner
- supp
: EMAN::EMData
- surface_face_z()
: EMAN::MarchingCubes
- surfaceRadius
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- surfaceSkeletonPres()
: wustl_mm::SkeletonMaker::Volume
- SVDAnalyzer()
: EMAN::SVDAnalyzer
- svdcmp()
: EMAN::Util
- swap()
: wustl_mm::SkeletonMaker::GridQueue2
- swap_bytes()
: EMAN::ByteOrder
- swap_central_slices_180()
: EMAN::Phase180Processor
- swap_corners_180()
: EMAN::Phase180Processor
- swap_data()
: EMAN::SpiderIO
- swap_header()
: EMAN::SpiderIO, EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO
- swapEle()
: wustl_mm::SkeletonMaker::GridQueue
- SWARM_AVERAGE_RATIO
: EMAN::BoxingTools
- SWARM_DIFFERENCE
: EMAN::BoxingTools
- SWARM_RATIO
: EMAN::BoxingTools
- symmetry
: AlignOptions
- Symmetry3D()
: EMAN::Symmetry3D
- symplane0()
: EMAN::EMData
- symplane0_ctf()
: EMAN::EMData
- symplane0_rect()
: EMAN::EMData
- symplane1()
: EMAN::EMData
- symplane2()
: EMAN::EMData
- symvol()
: EMAN::EMData
- T
: EMAN::Randnum
- tag_offset_array
: EMAN::SerIO
- tag_type
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- TagData()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- TagEntry()
: EMAN::GatanDM4::TagEntry, EMAN::Gatan::TagEntry
- TagGroup()
: EMAN::GatanDM4::TagGroup, EMAN::Gatan::TagGroup
- tags
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- TagTable()
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- tagtable
: EMAN::DM4IO, EMAN::GatanDM4::TagEntry, EMAN::GatanDM4::TagGroup, EMAN::GatanDM4::TagData, EMAN::DM3IO, EMAN::Gatan::TagEntry, EMAN::Gatan::TagGroup, EMAN::Gatan::TagData
- TagTypeID
: EMAN::SerIO::SerHeader
- tail
: EMAN::PDBReader, wustl_mm::SkeletonMaker::GridQueue
- TANH_BAND_PASS
: EMAN::Processor
- TANH_HIGH_PASS
: EMAN::Processor
- TANH_HOMOMORPHIC
: EMAN::Processor
- TANH_LOW_PASS
: EMAN::Processor
- ter_stop
: EMAN::PDBReader
- test_dict()
: EMAN::TestUtil
- test_FloatPoint()
: EMAN::TestUtil
- test_FloatSize()
: EMAN::TestUtil
- test_IntPoint()
: EMAN::TestUtil
- test_IntSize()
: EMAN::TestUtil
- test_map_emobject()
: EMAN::TestUtil
- test_map_float()
: EMAN::TestUtil
- test_map_int()
: EMAN::TestUtil
- test_map_long()
: EMAN::TestUtil
- test_map_string()
: EMAN::TestUtil
- test_map_vecstring()
: EMAN::TestUtil
- test_type_sizes()
: EMAN::U3DWriter
- test_Vec3f()
: EMAN::TestUtil
- test_Vec3i()
: EMAN::TestUtil
- test_vector_emdata()
: EMAN::TestUtil
- test_vector_float()
: EMAN::TestUtil
- test_vector_int()
: EMAN::TestUtil
- test_vector_long()
: EMAN::TestUtil
- test_vector_pixel()
: EMAN::TestUtil
- test_vector_string()
: EMAN::TestUtil
- tet_3_to_2()
: EMAN::Transform
- TetrahedralSym()
: EMAN::TetrahedralSym
- TEXTURE
: EMAN::EMFTGL
- tf
: EMAN::Util, EMAN::TestUtil
- theta
: EMAN::SpiderIO::SpiderHeader
- theta1
: EMAN::Util::tmpstruct, EMAN::SpiderIO::SpiderHeader, tmpstruct
- theta2
: EMAN::SpiderIO::SpiderHeader
- THINNING_CLASS_CURVE_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_CURVE_PRESERVATION_2D
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_POINT_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_SURFACE_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- THINNING_CLASS_TOPOLOGY_PRESERVATION
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- thresh_sigma
: EMAN::TomoAverager
- threshold()
: wustl_mm::SkeletonMaker::Volume
- ti
: EMAN::TestUtil
- tilt_axis
: EMAN::MrcIO::FeiMrcExtHeader
- tiltangles
: EMAN::MrcIO::FeiMrcHeader
- time
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::EmimIO::EmimImageHeader
- timeOnly
: EMAN::SerIO
- title
: EMAN::SpiderIO::SpiderHeader, EMAN::PifIO::PifImageHeader, EMAN::IcosIO::IcosHeader
- tmp_data
: EMAN::ReconstructorVolumeData
- to
: EMAN::FiniteProcessor
- to_angle()
: EMAN::Quaternion
- to_axis()
: EMAN::Quaternion
- to_dict()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_em_datatype()
: EMAN::VtkIO, EMAN::PifIO, EMAN::MrcIO, EMAN::ImagicIO2, EMAN::ImagicIO, EMAN::Gatan2IO, EMAN::FitsIO, EMAN::EmIO
- to_emobject()
: EMAN::TestUtil
- to_identity()
: EMAN::Transform
- to_matrix3()
: EMAN::Quaternion
- to_mrcmode()
: EMAN::MrcIO, EMAN::FitsIO
- to_one()
: EMAN::EMData
- to_pif_datatype()
: EMAN::PifIO
- to_str()
: EMAN::EMObject
- to_string()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_value()
: EMAN::EMData
- to_vector()
: EMAN::EMAN2Ctf, EMAN::EMAN1Ctf, EMAN::Ctf
- to_zero()
: EMAN::EMData
- TomoAverager()
: EMAN::TomoAverager
- TOP_HAT_BAND_PASS
: EMAN::Processor
- TOP_HAT_HIGH_PASS
: EMAN::Processor
- TOP_HAT_LOW_PASS
: EMAN::Processor
- TOP_HOMOMORPHIC
: EMAN::Processor
- tot_size
: EMAN::UnevenMatrix
- totalalloc
: EMAN::EMData
- TotalNumberElements
: EMAN::SerIO::SerHeader
- TRANSFORM
: EMAN::EMObject
- Transform()
: EMAN::Transform
- transform()
: EMAN::Transform, EMAN::TransformProcessor, EMAN::PointArray, EMAN::EMData
- TRANSFORMARRAY
: EMAN::EMObject
- transformarray
: EMAN::EMObject
- translate()
: EMAN::Transform, EMAN::EMData
- translate_newBasis()
: EMAN::Transform
- translation()
: EMAN::Matrix4
- transpose()
: EMAN::Matrix4, EMAN::Matrix3, EMAN::Transform, EMAN::MrcIO
- transpose_inplace()
: EMAN::Transform
- trilinear_interpolate()
: EMAN::Util
- triquad()
: EMAN::Util
- trmsh3_()
: EMAN::Util
- twoD
: EMAN::SerIO
- twoD_fine_ali()
: EMAN::Util
- twoD_fine_ali_G()
: EMAN::Util
- twoD_fine_ali_SD()
: EMAN::Util
- twoD_fine_ali_SD_G()
: EMAN::Util
- twoD_to_3D_ali()
: EMAN::Util
- TwoDTestFunc()
: EMAN::Util
- twosigma2
: EMAN::Util::Gaussian, Gaussian
- Type
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- type
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >, EMAN::SpiderIO::SpiderHeader, EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader, EMAN::Gatan2IO::Gatan2Header, EMAN::EMObject
- type_dict
: EMAN::TypeDict
- type_registry
: EMAN::EMObject
- TypeDict()
: EMAN::TypeDict
- typesize()
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- U16
: EMAN::U3DWriter
- U32
: EMAN::U3DWriter
- U3DWriter()
: EMAN::U3DWriter
- u6
: EMAN::SpiderIO::SpiderHeader
- U64
: EMAN::U3DWriter
- u7
: EMAN::SpiderIO::SpiderHeader
- u8
: EMAN::SpiderIO::SpiderHeader
- U8
: EMAN::U3DWriter
- u9
: EMAN::SpiderIO::SpiderHeader
- ui
: EMAN::EMObject
- uid
: BPKT
- UINT
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- un1
: EMAN::Gatan2IO::Gatan2Header
- un2
: EMAN::Gatan2IO::Gatan2Header
- uncut_slice()
: EMAN::EMData
- UnevenMatrix()
: EMAN::UnevenMatrix
- UNKNOWN
: EMAN::SerIO, EMAN::EMObject, EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- unreal()
: EMAN::Quaternion
- UNSIGNED_CHAR
: EMAN::VtkIO
- UNSIGNED_INT
: EMAN::VtkIO
- UNSIGNED_INT16_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- UNSIGNED_INT32_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- UNSIGNED_INT64_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- UNSIGNED_INT8_DATA
: EMAN::GatanDM4::DataType, EMAN::Gatan::DataType
- UNSIGNED_LONG
: EMAN::VtkIO
- UNSIGNED_SHORT
: EMAN::VtkIO
- UNSIGNEDINT
: EMAN::EMObject
- UNSTRUCTURED_GRID
: EMAN::VtkIO
- unused
: EMAN::OmapIO::OmapHeader
- unused1
: EMAN::ImagicIO2::Imagic4D
- unused2
: EMAN::ImagicIO2::Imagic4D
- unwrap()
: EMAN::EMData
- unwrap_largerR()
: EMAN::EMData
- update()
: EMAN::XYData, EMAN::EMData
- update_centers()
: EMAN::KMeansAnalyzer
- update_fav()
: EMAN::Util
- update_stat()
: EMAN::MrcIO, EMAN::EMData
- use_display_lists
: EMAN::EMFTGL::EMFTGLFontInstance, EMAN::EMFTGL
- use_sirt
: AlignOptions
- user
: EMAN::MrcIO::MrcHeader
- user1
: EMAN::ImagicIO2::Imagic4D
- user2
: EMAN::ImagicIO2::Imagic4D
- userdata
: EMAN::EmIO::EMHeader
- username
: EMAN::EmIO::EMHeader
- USHORT
: EMAN::GatanDM4::TagData, EMAN::Gatan::TagData
- v
: EMAN::Util::KaiserBessel, KaiserBessel
- v1
: EMAN::PaintProcessor
- v2
: EMAN::PaintProcessor
- V4L2IO()
: EMAN::V4L2IO
- v4l_file
: EMAN::V4L2IO
- vadjust
: EMAN::Util::KaiserBessel, KaiserBessel
- validate_input_args()
: EMAN::Cmp
- ValidNumberElements
: EMAN::SerIO::SerHeader
- value
: ccf_point, EMAN::MaskSharpProcessor, EMAN::RealPixelProcessor, EMAN::Pixel
- value1
: EMAN::SigmaProcessor
- value2
: EMAN::SigmaProcessor
- value_type
: EMAN::Dict::const_iterator, EMAN::Dict::iterator
- valueQueue
: EMAN::PriorityQueue< ValueT, KeyT >
- values
: EMAN::Dict, assign_groups_comparator
- var()
: EMAN::Util
- vareas()
: EMAN::Util
- varia
: EMAN::ImagicIO::ImagicHeader
- variable()
: EMAN::Log
- VARIABLE_LOG
: EMAN::Log
- varimax()
: EMAN::varimax
- VAX_VMS
: EMAN::ImagicIO2
- vd1
: EMAN::MrcIO::FeiMrcHeader
- vd2
: EMAN::MrcIO::FeiMrcHeader
- vec
: EMAN::Vec2< Type >, EMAN::Vec3< Type >, EMAN::Vec4< Type >
- Vec2()
: EMAN::Vec2< Type >
- Vec3()
: EMAN::Vec3< Type >
- Vec4()
: EMAN::Vec4< Type >
- Vector3()
: EMAN::Vector3
- Vector4()
: EMAN::Vector4
- verbose
: EMAN::KMeansAnalyzer
- verify_image_file()
: EMAN::TestUtil
- verify_image_file2()
: EMAN::TestUtil
- verify_image_file_by_mode()
: EMAN::TestUtil
- version
: EMAN::Gatan2IO::Gatan2Header
- vertical_acf()
: EMAN::EMUtil
- vlog()
: EMAN::Log
- VOID_POINTER
: EMAN::EMObject
- volData
: wustl_mm::SkeletonMaker::Volume
- voltage
: EMAN::ImagicIO2::Imagic4D, EMAN::Ctf
- Volume()
: wustl_mm::SkeletonMaker::Volume
- VolumeData()
: wustl_mm::SkeletonMaker::VolumeData
- VolumeSkeletonizer()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- voronoi()
: EMAN::Util
- voronoidiag()
: EMAN::Util
- VoxelOr()
: wustl_mm::GraySkeletonCPP::VolumeSkeletonizer
- vp
: EMAN::EMObject
- vrdg()
: EMAN::Util
- vtable
: EMAN::Util::KaiserBessel, KaiserBessel
- VTK_ASCII
: EMAN::VtkIO
- VTK_BINARY
: EMAN::VtkIO
- vtk_file
: EMAN::VtkIO
- VTK_UNKNOWN
: EMAN::VtkIO
- VtkIO()
: EMAN::VtkIO
- VtkType
: EMAN::VtkIO
- vv
: EMAN::MarchingCubes
- x
: EMAN::XYData::Pair, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, point3d_t, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- x0
: EMAN::UnevenMatrix::Xdim
- x1
: EMAN::UnevenMatrix::Xdim
- x_iter
: EMAN::EMData::ClipInplaceVariables
- x_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- x_origin()
: EMAN::Region
- X_SCAN_AXIS
: EMAN::SalIO
- x_shift
: EMAN::MrcIO::FeiMrcExtHeader
- x_stage
: EMAN::MrcIO::FeiMrcExtHeader
- xbb
: t_BPCQ_line
- xc
: EMAN::CircularMaskProcessor
- Xdim()
: EMAN::UnevenMatrix::Xdim
- xf
: EMAN::SpiderIO::SpiderHeader
- xform_align_nbest()
: EMAN::EMData, EMAN::RT3DSymmetryAligner, EMAN::RT3DSphereAligner, EMAN::RT3DGridAligner, EMAN::Aligner
- XGradientProcessor()
: EMAN::XGradientProcessor
- xintp
: CudaPeakInfoFloat
- xlen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- xoff
: EMAN::EMArray< T >, EMAN::EMData
- xorg
: EMAN::MrcIO::FeiMrcHeader
- xorigin
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- xplor_file
: EMAN::XplorIO
- XplorIO()
: EMAN::XplorIO
- xrng
: AlignOptions
- xrotation()
: EMAN::Matrix4
- xshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- xstart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
- XYDATA
: EMAN::EMObject
- XYData()
: EMAN::XYData
- xydata
: EMAN::EMObject
- xyz_file
: EMAN::XYZIO
- XYZAverager()
: EMAN::XYZAverager
- XYZIO()
: EMAN::XYZIO
- XYZReconstructor()
: EMAN::XYZReconstructor
- y
: EMAN::XYData::Pair, EMAN::Vector4, EMAN::Point3, EMAN::Vector3, EMAN::ScreenPoint, EMAN::ScreenVector, point3d_t, stcom_, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- y_iter
: EMAN::EMData::ClipInplaceVariables
- y_list
: EMAN::GatanDM4::TagTable, EMAN::Gatan::TagTable
- y_origin()
: EMAN::Region
- Y_SCAN_AXIS
: EMAN::SalIO
- y_shift
: EMAN::MrcIO::FeiMrcExtHeader
- y_stage
: EMAN::MrcIO::FeiMrcExtHeader
- ybb
: t_BPCQ_line
- yc
: EMAN::CircularMaskProcessor
- year
: EMAN::ImagicIO2::Imagic4D, EMAN::ImagicIO::ImagicHeader
- YGradientProcessor()
: EMAN::YGradientProcessor
- yintp
: CudaPeakInfoFloat
- ylen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- ymax
: EMAN::XYData
- ymin
: EMAN::XYData
- yoff
: EMAN::EMArray< T >, EMAN::EMData
- yorg
: EMAN::MrcIO::FeiMrcHeader
- yorigin
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- yrng
: AlignOptions
- yrotation()
: EMAN::Matrix4
- yshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- ystart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
- z
: EMAN::Vector4, EMAN::Point3, EMAN::Vector3, point3d_t, EMAN::PaintProcessor, EMAN::PDBReader, wustl_mm::SkeletonMaker::gridPoint, wustl_mm::SkeletonMaker::gridQueueEle, EMAN::Pixel
- z_iter
: EMAN::EMData::ClipInplaceVariables
- z_origin()
: EMAN::Region
- z_stage
: EMAN::MrcIO::FeiMrcExtHeader
- zc
: EMAN::CircularMaskProcessor
- zero()
: EMAN::PointArray, EMAN::PDBReader
- zero_corner_circulant()
: EMAN::EMData
- zero_memory()
: EMAN::ReconstructorVolumeData
- zero_to
: EMAN::RecipCarefullyProcessor
- zfac
: EMAN::MrcIO::FeiMrcHeader
- ZGradientProcessor()
: EMAN::ZGradientProcessor
- zintp
: CudaPeakInfoFloat
- zlen
: EMAN::PifIO::PifImageHeader, EMAN::MrcIO::FeiMrcHeader, EMAN::MrcIO::MrcHeader
- zoff
: EMAN::EMArray< T >, EMAN::EMData
- zorg
: EMAN::MrcIO::FeiMrcHeader
- zorigin
: EMAN::MrcIO::MrcHeader, EMAN::AmiraIO
- zrotation()
: EMAN::Matrix4
- zshift
: EMAN::ImagicIO2::Imagic4D, EMAN::EMData::ClipInplaceVariables
- zstart
: EMAN::PifIO::PifImageHeader, EMAN::OmapIO::OmapHeader
Generated on Tue Jun 11 13:47:39 2013 for EMAN2 by
1.3.9.1