Table 4.10:
e2proc3d.py Options
| Argument |
Description |
| |
|
| -h, -help |
show this help message and exit |
| -shrink=n |
Shrinks the image by integer n using median filter |
| -scale=n |
Rescales the image by 'n', generally used with clip option. |
| -clip=x |
y z xc yc zc Make the output have this size, no scaling. |
| -fftclip=x |
y z Make the output have this size, rescaling by padding FFT. |
| -filter=filtername:param1=val1:param2=val2 |
Apply a filter named 'filtername' with all its parameters/values. |
| -apix=APIX |
A/pixel for S scaling |
| -origin=x |
y z Set the coordinates for the pixel (0,0,0). |
| -mult=f |
Scales the densities by 'f' in the output |
| -add=f |
Adds a constant 'f' to the densities |
| -calcsf=outputfile |
Calculate a radial structure factor. Must specify apix. |
| -tophalf |
The output only keeps the top half map |
| -icos5fhalfmap |
The input is the icos 5f top half map generated by the 'tophalf' option |
| -outtype=image-type |
Set output image format, mrc, imagic, hdf, etc |
| |
|