procpdb.py
This program is for performing simple operations on PDB files
Usage
procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]
Parameters
<infile>
Input file
[<outfile>]
Output file
[rot=<alt,az,phi>]
Rotation in EMAN convention
[trans=<dx,dy,dz>]
Translate (before rotation)
[posttrans=<dx,dy,dz>]
Post-translation
[centeratoms]
Center based on the mean atom position
[centerelec]
Center based on the center of electron charge
[centermass]
Center based on the center of mass
[animorph=<n>,<apix>,<vecfile>]
This will use a morph vector file (segment3d) to morph atom positions
[apix=<A/pix>]
multiply trans by apix
[split]
Split file at TER records. Results imperfect.
[include=[helix,sheet,other]
[include=[helix,sheet,other]]
[chains=<chainltr>]
eg - "ABO", for extracting a portion of a complex
Description
Simple program for manipulating PDB files in the EMAN convention
EMAN Manual page, generated Mon Jan 8 17:35:59 2007