Differences between revisions 17 and 44 (spanning 27 versions)
Revision 17 as of 2008-11-13 18:24:46
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Revision 44 as of 2011-11-29 13:28:32
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Editor: SteveLudtke
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General: Our [[https://groups.google.com/forum/#!forum/eman2|Google Group]] is now the primary place for ongoing EMAN2 discussions.
You can also check our [[http://blake.bcm.edu/bugzilla/|bug tracking system]]
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 * [:EMAN2/FAQ/UseEman2:Can I use EMAN2 to do refinements yet ?]
Installation
'''General:'''
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 * [:EMAN2/FAQ/UseEman2 OSX:EMAN2 installed under OSX doesn't work properly. Any suggestions?]
 * [:EMAN2/FAQ/UseEman2 Windows:EMAN2 installed under Windows doesn't work properly. Any suggestions?]
 * [:EMAN2/FAQ/UseEman2 Ubuntu:EMAN2 installed under Ubuntu 8.04 Linux doesn't work properly. Any suggestions?]
  * [:Ubuntu 8.10 error running e2.py]
Program Specific FAQ
 * [[EMAN2/FAQ/CiteEman2|What paper should I cite if I use EMAN2 for a reconstruction]]
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 * [:EMAN2/boxerFAQ:e2boxer FAQ]
 * [:EMAN2/e2make3dfaq:e2make3d FAQ]
'''Installation'''

 * Installation FAQs can be found on the [[EMAN2/Install|Installation]] page.
 * [[EMAN2/FAQ/Computer|What sort of computer should I buy]] ?

'''BDB Issues '''
 * [[EMAN2/FAQ/NfsBdb|We use NFS-mounted directories, how can I safely use EMAN2 with it's BDB system]]
 * [[EMAN2/FAQ/BdbConvert|How can I convert these funny 'bdb' files into something I can use in Chimera or other software ?]]
 * [[EMAN2/FAQ/BdbErrors|I'm getting funny errors that seem to be related to BDB. What do I do ???]]
 * [[EMAN2/FAQ/BdbVstack|Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?]]


'''Refinement Issues'''

 * [[EMAN2/FAQ/Symmetry|What symmetry should I use for my particle if I don't know what it is ?]]
 * [[EMAN2/FAQ/AutoMask|How do I pick the correct parameters for automasking during refinement or using the mask.auto3d processor]]
 * [[EMAN2/FAQ/ChangeBoxSize|I just decided that my box size is too large, and I want to make it smaller, how can I do this without making a mess ?]]
 * [[EMAN2/FAQ/InvertData|I just realized that I forgot to invert my data. I see black protein on a white background. What do I do ?]]
 * [[EMAN2/FAQ/FSC|I computed my FSC curves and they look funny, what's going on, and how can I get them to look better]]

'''Program Specific FAQ'''

 * [[EMAN2/boxerFAQ|e2boxer FAQ]]
 * [[EMAN2/e2make3dfaq|e2make3d FAQ]]

'''Programming FAQ'''

 * [[EMAN2MakingVolumes|Is there a way to build a volume EMData object from a set of slices ?]]

'''EMAN2 and other software'''

 * [[EMAN2/FAQ/SpiderEuler|Can I convert EMAN2 Euler angles from e2initialmodel.py to Spider (or other) convention ?]]

Please ask your EMAN2 specific questions here. It is monitored, and one of the EMAN2 developers should post a reply. You can subscribe to any page to get an email announcement when a change is made to specific pages.

Our Google Group is now the primary place for ongoing EMAN2 discussions. You can also check our bug tracking system

General:

Installation

BDB Issues

Refinement Issues

Program Specific FAQ

Programming FAQ

EMAN2 and other software

EMAN2/FAQ (last edited 2016-11-03 19:18:04 by SteveLudtke)